LOCUS       XM_039094582            7458 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ankyrin 1 (Ank1), transcript variant
            X20, mRNA.
ACCESSION   XM_039094582
VERSION     XM_039094582.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094582.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7458
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7458
                     /gene="Ank1"
                     /note="ankyrin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 14 ESTs, 1 long SRA read,
                     3 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 28 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:306570"
                     /db_xref="RGD:1309620"
     CDS             16..5295
                     /gene="Ank1"
                     /codon_start=1
                     /product="ankyrin-1 isoform X20"
                     /protein_id="XP_038950510.1"
                     /db_xref="GeneID:306570"
                     /db_xref="RGD:1309620"
                     /translation="MQAPPCTLVPDKAFSSCRVVVASLLGRACSCCSDSSPALRPAGG
                     VLVLSNKMGFCKADAATSFLRAARSGNLDKALDHLRNGVDINTCNQNGLNGLHLASKE
                     GHVKMVVELLHKEIILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFT
                     PLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGK
                     VRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRG
                     ASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRI
                     SEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITLDHLTPLHVA
                     AHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMELLLKTGASIDAVTES
                     GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA
                     KANAKAKDDQTPLHCAARIGHTSMVKLLLENDASPNLATTAGHTPLHTAAREGHVDTA
                     LALLEKEASQACMTKKGFTPLHVAAKYGKVRLAELLLEHDAHPNAAGKNGLTPLHVAV
                     HHNNLDIVQLLLPRGGSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGSANAESVQG
                     VTPLHLAAQEGHTEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVT
                     VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT
                     LLLKNGASPNEVSSNGTTPLAIAKRLGYISVTDVLKVVTDETSVVLVSDKHRMSYPET
                     VDEILDVSEDEGDELVGSKAERRDSRDVGEEKELLDFVPKLDQVVESPAIPRIPCVTP
                     ETVVIRSEDQEQASKEYDEDSLIPSSPATETSDNISPVASPVHTGFLVSFMVDARGGS
                     MRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGA
                     QFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHKSRYGESYLDQILNGMDEELG
                     SLEELEKKRVCRIITTDFPLYFVIMSRLCQDYDTIGPEGGSLRSKLVPLVQATFPENA
                     VTKKVKLALQAQPVPDELVTKLLGNQATFSPIVTVEPRRRKFHRPIGLRIPLPPSWTD
                     NPRDSGEGDTTSLRLLCSVIGGTDQAQWEDITGTTKLVYANECANFTTNVSARFWLSD
                     CPRTAEAVHFATLLYKELTAVPYMAKFVIFAKMNDPREGRLRCYCMTDDKVDKTLEQH
                     ENFVEVARSRDIEVLEGMPLFAELSGNLVPVKKAAQQRSFHFQSFRENRLAIPVKVRD
                     SSREPGGFLSFLRKPMKYEDAQHILCHLNVTMPPCTKGSGAEDRRRTLTPLTLRYSIL
                     SESRLGFTSDTDRVEMKMAVIREHLGLSWAELARELQFSVEDINRIRVENPNSLLDQS
                     TALLTLWVDREGENAKMENLYTALRNIDRSEIVNMLEGSGRQSRNLKPDRRHGDREYS
                     LSPSQVNGQQRVHARITDSPSVRQVLDRSQARTVDWYKQGSAASYPQEAAQSSWQEEV
                     TQGPQSFQRRITTIQGPEPGTLQEYEQVVVSTREHVQRGPPESDSPKAGKDPSLWASE
                     SAFSQEVQGDELQNIPGEQVTEEQFTDEQGNIVTKKIIRKVVRQVDSSGAIDTQQHEE
                     VIVEGPLADPGDLEADIESFMKLTKDHTSTPKP"
ORIGIN      
        1 caatctgagg gccacatgca ggcgccgccc tgcaccctgg tccccgataa ggccttttct
       61 agttgcaggg tagttgtggc tagtctcctg gggcgagcct gttcttgctg ctctgacagc
      121 tctcccgccc tccggcccgc cggcggggtc ctggtcctga gcaacaagat gggcttctgt
      181 aaagccgatg ctgctaccag ctttttgcgg gcggcacgct caggaaacct ggacaaggct
      241 ttggatcacc tacgcaatgg agtggacatt aacacctgta accagaacgg gttgaatggc
      301 ttgcatctgg cctccaaaga aggccatgtg aagatggtgg ttgaacttct gcacaaagag
      361 atcattctag aaacaacaac caagaagggg aacactgctc tgcatatcgc tgcccttgct
      421 ggtcaggacg aggtggtccg ggagctggtc aactatggag ccaatgtcaa tgcccagtcc
      481 cagaaaggct tcactcccct gtacatggct gctcaagaga atcacttgga ggtggtgaag
      541 tttctcctgg agaatggagc caatcagaat gtagccacag aggatggctt cactccgctg
      601 gctgtggctc tgcagcaggg ccatgagaat gtggtggctc acctcatcaa ctatggaacg
      661 aaaggaaaag tgcgcctccc tgccctgcac atcgcggccc gcaacgatga cacacggaca
      721 gccgcagtcc ttctgcagaa tgaccccaac ccagatgtgc tttccaagac gggattcaca
      781 cccctccaca tcgcagcaca ctacgagaac ctcaacgtgg cccagctgct cctcaaccgg
      841 ggagccagcg tcaacttcac acctcagaat ggtattactc cactgcacat cgcctcccgc
      901 aggggaaatg tgatcatggt gagactcctg ctggaccgag gggctcagat agaaacgagg
      961 accaaggatg aactgacacc actccactgt gcagctcgga atggacacgt gagaatctca
     1021 gagatcctgc tggaccacgg ggcacccatc caagccaaaa ccaagaatgg cttgtccccc
     1081 atccacatgg cggctcaggg agaccacctc gactgtgtcc gacttctatt gcaatacaac
     1141 gccgagatag atgacatcac cttagatcac ctgactcctc tccacgtggc agcccactgc
     1201 ggccaccaca gggtggctaa ggttcttttg gataaagggg ccaagccgaa ctccagagcc
     1261 ctgaatggct ttaccccact acacatcgcc tgcaagaaga accacatacg tgtcatggag
     1321 ctgctgctga agacaggagc ctctattgac gcagtcactg agtctggcct gacacctctc
     1381 catgtagcct ccttcatggg acaccttcct attgtgaaga acttattaca gaggggagcg
     1441 tcacccaatg tctccaatgt gaaagtagaa accccattgc acatggcagc ccgagcaggg
     1501 catacagaag tggccaaata tttgctccag aacaaagcca aagccaatgc caaggccaag
     1561 gacgaccaga caccacttca ctgtgctgct cgcatcggcc acacgagcat ggtgaagctc
     1621 ctgctggaga atgacgccag ccccaacctg gctaccactg ctggccacac acctctgcac
     1681 accgcagccc gtgagggtca cgtggacaca gccctggccc tgctggaaaa ggaggcatcc
     1741 caagcctgca tgaccaagaa aggatttacc cctctccacg tggctgccaa gtatgggaag
     1801 gtccggctgg cagagctgct gctggaacat gatgcccatc ccaacgcggc cggaaagaac
     1861 ggcttgactc ccctgcatgt ggccgtccat cacaacaact tggacattgt ccagcttctc
     1921 cttccccgag gtggctcccc gcacagccct gcctggaatg gctacacccc tttgcacatc
     1981 gcagccaagc agaaccagat agaggtggcc cgcagtctac tgcaatacgg agggtccgcg
     2041 aatgcagagt ctgtacaagg agtgaccccg cttcacctgg ctgcccaaga gggccacacg
     2101 gaaatggtcg ctcttctcct gtcaaagcaa gccaatggca acctggggaa caagagtgga
     2161 ctcactcctc tccacctggt agcacaagaa ggccatgttc cagtggcgga tgtgctgatt
     2221 aaacatggcg tcacagtgga tgctacgacc cggatgggtt acaccccact ccacgtggcc
     2281 agtcactacg gaaacatcaa gctggtgaag ttcctgctac agcaccaggc agatgtcaac
     2341 gccaagacca agctagggta cagccccttg caccaggcag ctcagcaagg acacacggac
     2401 attgtgacat tgctcctgaa gaatggtgct tctccaaatg aggtcagctc gaacggaacc
     2461 acacctctgg caatagccaa acgtttgggc tacatctctg taacagacgt gctcaaggtg
     2521 gtcacagatg aaaccagtgt ggtgttagtc agtgacaaac accggatgag ctaccctgag
     2581 acagtggatg agatcctgga tgtgtctgaa gatgaaggtg acgaacttgt cggctcgaag
     2641 gctgaaaggc gggactcccg ggatgtgggt gaggagaaag agctgttgga ttttgtgccg
     2701 aagctagacc aagtggtgga atccccagcc atcccaagga tcccttgtgt cacgcctgag
     2761 actgttgtga tccgatccga agatcaggaa caagcatcta aagagtatga tgaggactca
     2821 ctcattccca gtagcccagc cacagagacc tcagacaaca tcagccccgt ggctagcccc
     2881 gtccacacag ggtttctggt gagcttcatg gtcgatgccc ggggaggatc catgagagga
     2941 agtcgtcata atggcctaag ggtggtgatc cctccccgga catgcgcagc acccactcgc
     3001 atcacctgcc gcctggttaa gccccagaag ctaagcacac cgcccccgct ggctgaggag
     3061 gagggcctag ccagcaggat cattgcactg ggtcctacgg gggcccagtt ccttagccct
     3121 gtgatcgtgg aaatccccca ctttgcctcc catggccgcg gggaccgtga gctggtggtt
     3181 ctgaggagcg agaacggctc cgtgtggaag gagcacaaga gccgctatgg agaaagctac
     3241 ctggaccaga tcctgaacgg catggacgaa gagctgggga gcctggagga gctggagaag
     3301 aagcgcgtgt gtcgcatcat taccaccgac ttccccctgt actttgtcat catgtcccgg
     3361 ctctgccagg actacgacac catcggtcct gaagggggct ccctgagaag caagctggtg
     3421 cccctggtac aggcgacgtt ccccgaaaac gcggtgacca agaaagtgaa gctggctctg
     3481 caggcccagc ctgtcccaga cgagctggtg accaagctcc tgggcaacca ggccaccttc
     3541 agccccattg ttactgttga gccaaggcgt cggaagttcc accgtcccat tgggctgcga
     3601 atcccactcc ctccctcatg gactgacaac cccagggaca gcggggaggg agacaccacc
     3661 agcctacgct tactgtgcag cgtcatcggt ggaactgacc aagcccagtg ggaagatata
     3721 acgggaacaa ccaagcttgt atacgccaat gagtgcgcca actttaccac caacgtctca
     3781 gccagattct ggctgtcgga ctgtcctcgg accgctgagg ccgtacactt tgccactctc
     3841 ttgtacaaag agctcacggc agttccctac atggccaagt ttgtcatttt cgccaagatg
     3901 aacgaccccc gggaaggacg gctacgctgc tactgcatga cagatgacaa ggtggacaag
     3961 accctggaac agcatgaaaa cttcgtggag gtggcccgga gcagggacat agaggttcta
     4021 gaagggatgc ctctgtttgc agaactctct gggaacttgg tgcctgtcaa gaaagcggcc
     4081 cagcagcgaa gcttccattt ccagtcattt cgagagaatc gcctggccat ccccgtgaag
     4141 gtgagggaca gcagccgcga gccaggaggg ttcttgtcgt tcctgcggaa gccgatgaaa
     4201 tatgaagacg cacagcacat cctctgccac ttgaatgtca ccatgccccc ctgtaccaag
     4261 ggcagtggag cagaagacag gagaaggacc ctgacgccct tgactcttcg ctatagcatt
     4321 ctcagcgagt cccggctggg ttttaccagt gacacagacc gtgttgaaat gaagatggct
     4381 gtcatcaggg agcacctcgg cctcagctgg gcagagctgg cccgggagct gcagttcagc
     4441 gtggaggaca tcaaccggat ccgtgtagaa aaccctaact ccttgttgga tcagagtaca
     4501 gccctgctga ccctctgggt ggaccgtgaa ggcgaaaatg caaagatgga gaatctgtac
     4561 acggccctgc ggaacatcga cagaagtgag attgttaaca tgttggaggg ctccggcagg
     4621 cagagcagaa acctcaaacc agaccggagg catggggacc gggagtactc attgtcaccc
     4681 tcccaggtga atggccagca gcgagttcac gcccgaatca cagactcacc ctcagtgagg
     4741 caggtgctgg acagaagcca ggccagaaca gtggactggt ataaacaggg ttcagcagca
     4801 tcatatccac aagaggccgc acaaagttcc tggcaagagg aggtcacgca aggcccacag
     4861 tcattccaga gaaggatcac caccatccaa gggccggagc ccggcacact tcaggaatat
     4921 gagcaggtgg tggtgtccac cagggagcat gtgcagaggg ggccacctga gagcgacagc
     4981 cccaaggccg ggaaggaccc aagtctgtgg gcatcggaga gtgccttctc tcaagaggtg
     5041 cagggggatg agcttcagaa tattccagga gagcaggtga cagaggaaca attcacagac
     5101 gaacagggca acattgtcac caagaagatc attcgaaaag tcgtccgaca ggtggactcc
     5161 tctggtgcca tcgacaccca gcagcacgag gaggtgattg ttgagggacc cctggcagac
     5221 cctggggatc tggaagcgga cattgagtcc tttatgaaac ttactaagga tcacacctca
     5281 acacccaaac cctgaactcc acacactctt gtcatgcaca cgggaggaga cctggaccag
     5341 agggctactg aagggtcgca cgcgttctga gctccccggc atgacctctg taaggagttt
     5401 cctttagtct cctattcgca tgaatgactg gctgtagacg catgacctac agtcttcagt
     5461 cctgcctcta gcgactatgg atctctgtgg gaatcaggac aaaggcggcg agagaaggga
     5521 gcggataagg agccccaaag agcacacggg tgcagacacg aataagggct taccgtggct
     5581 gggatggttg atccgtttgt ttgcgttttg ttttgatttt tgacttcaaa ctcatttgta
     5641 agaaattcac acgatctttc tggaccgagg gaacgggaaa cggcgtgaaa tcagtttagc
     5701 cctttgtcct cgtgtaccag tctcctatac ccccccacac accacatgcc actcgtcccc
     5761 gccccacccc cacccccgtg gagggactgc tcttcccaga atgacatgac acaggtgcac
     5821 acacgcaggt cttcccttca ctcagtctac actgatttta ctgtgacctc tgaagccgta
     5881 tggataaact ggatttattt ttttttttta tgttgtctct cagtttcagt attaactcac
     5941 cttccagtgg gagatcatca ccctgagagt gcactcgggg ttccttgtgt tagaaattta
     6001 agaactgagg caaggagccc ctaggctttg ctgtagggct caaaggggag ccagggtccc
     6061 atctcgaagt tctctgctgg ggaaggacct gtggctgtcc gaggatcgca ccagcatgtc
     6121 cgatagagga aggggttttc taaaccgtca agtacttcta taatagtctg tgttcaaagt
     6181 gtaaactgtt acagtaatca gccttgtgta tatgaaaaca ataaatacta tgcaaaccaa
     6241 tagaaacacg ttagcagtat gtacagagcc ctaaagagct cagctccaga ggacttctcc
     6301 aggctgtggg aggagctaaa ggctgtcttt cactgaatga ggaagggagt agggctgtga
     6361 atgtacctgc cagttcctag gtcagaccac cctgaggtct cccagagcca acttggtgct
     6421 tgaagtgcag tgcaagtggc cgcagtctgg aggtcctgac acagacagct gggctcaggc
     6481 tggtcggcca agtgcctggc tctgaccacg ggcccagcgc aaggagagcc ggagcaggat
     6541 agaactgctg accaggaggc tgaggagaga ccctcttcta tctagactca gggccaggcc
     6601 aggaagggaa ccctcaactg gctggtcttg ccttggagcc ctcagggaag agccttaacg
     6661 tcacactaga gtctcctgca gagggaggcc cgaatcagca caatccggct ccgccatgcc
     6721 cgggcggcgc cccctagggc caggagagag actggcaggc tcttctcgct ctcccggagc
     6781 cactggtgga cagcggtcac cttcctcgcc tgccgctctt cggggtgtcg tcgggacaca
     6841 ataaaaacct tccaagtagc acagacgccc ctccatgccc gtacccccac gccctggagg
     6901 ccctcccggg gactccagcc cgcgcgcgct ctagccccgg gccggtgcgc gagttggggg
     6961 gggggggagg atgctgtggt ccgcgggcgt ggctggcttc cctggggggg agggggcggc
     7021 ggcccccgga gggcgggcga ggattggcgc ggggtcgccc cgcctcgccc cgccccctcc
     7081 gcccagtagc gcctcctagc gccctgcgcg gccgactccg ctttggcacc ctccgctcgg
     7141 tctggcttgg ctgcttggca cgccgccccc gcccacggcg gcatggctgc gcgctcccgt
     7201 tgctagtagg agctgtttta ggaggagttt ggggtctcca cttgatgcct agagaatgct
     7261 gcagtctgca ccttagacgc tttttagaag ttttgaaatg atttttttaa ttgttatgaa
     7321 aaaaatgaac tatgtcttgg ctctctctca catgctctgt tactgagaga gaccagccca
     7381 ccctactctg atgtatagac cattctccct acaccagcta aacaaatgtc aaattaataa
     7441 agaaatggac tcatggca
//
