LOCUS       XM_039094572            7872 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ankyrin 1 (Ank1), transcript variant
            X10, mRNA.
ACCESSION   XM_039094572
VERSION     XM_039094572.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094572.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7872
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7872
                     /gene="Ank1"
                     /note="ankyrin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 14 ESTs, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:306570"
                     /db_xref="RGD:1309620"
     CDS             16..5709
                     /gene="Ank1"
                     /codon_start=1
                     /product="ankyrin-1 isoform X10"
                     /protein_id="XP_038950500.1"
                     /db_xref="GeneID:306570"
                     /db_xref="RGD:1309620"
                     /translation="MQAPPCTLVPDKAFSSCRVVVASLLGRACSCCSDSSPALRPAGG
                     VLVLSNKMGFCKADAATSFLRAARSGNLDKALDHLRNGVDINTCNQNGLNGLHLASKE
                     GHVKMVVELLHKEIILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFT
                     PLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGK
                     VRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRG
                     ASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRI
                     SEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITLDHLTPLHVA
                     AHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMELLLKTGASIDAVTES
                     GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA
                     KANAKAKDDQTPLHCAARIGHTSMVKLLLENDASPNLATTAGHTPLHTAAREGHVDTA
                     LALLEKEASQACMTKKGFTPLHVAAKYGKVRLAELLLEHDAHPNAAGKNGLTPLHVAV
                     HHNNLDIVQLLLPRGGSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGSANAESVQG
                     VTPLHLAAQEGHTEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVT
                     VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT
                     LLLKNGASPNEVSSNGTTPLAIAKRLGYISVTDVLKVVTDETSVVLVSDKHRMSYPET
                     VDEILDVSEDEGTAHISLTGDELVGSKAERRDSRDVGEEKELLDFVPKLDQVVESPAI
                     PRIPCVTPETVVIRSEDQEQASKEYDEDSLIPSSPATETSDNISPVASPVHTGFLVSF
                     MVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRI
                     IALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHKSRYGESYLDQIL
                     NGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSRLCQDYDTIGPEGGSLRSKLVPLV
                     QATFPENAVTKKVKLALQAQPVPDELVTKLLGNQATFSPIVTVEPRRRKFHRPIGLRI
                     PLPPSWTDNPRDSGEGDTTSLRLLCSVIGGTDQAQWEDITGTTKLVYANECANFTTNV
                     SARFWLSDCPRTAEAVHFATLLYKELTAVPYMAKFVIFAKMNDPREGRLRCYCMTDDK
                     VDKTLEQHENFVEVARSRDIEVLEGMPLFAELSGNLVPVKKAAQQRSFHFQSFRENRL
                     AIPVKVRDSSREPGGFLSFLRKPMKYEDAQHILCHLNVTMPPCTKGSGAEDRRRTLTP
                     LTLRYSILSESRLGFTSDTDRVEMKMAVIREHLGLSWAELARELQFSVEDINRIRVEN
                     PNSLLDQSTALLTLWVDREGENAKMENLYTALRNIDRSEIVNMLEGSGRQSRNLKPDR
                     RHGDREYSLSPSQVNGYSSLQDELLSPASLHYALPSPLCADQYWNEVAVIDAIPLAAT
                     EHDTMLEMSDMQVWSSGLTPSLVTAEDSSLECSKAEDSDAIPEWKLEGAHSEDTQGPE
                     LGSQDLVEDDTVDSDATNGLADLLGQEEGQRSEKKSQEVSGTEQDTETEVSLVSGQQR
                     VHARITDSPSVRQVLDRSQARTVDWYKQGSAASYPQEAAQSSWQEEVTQGPQSFQRRI
                     TTIQGPEPGTLQEYEQVVVSTREHVQRGPPESDSPKAGKDPSLWASESAFSQEVQGDE
                     LQNIPGEQVTEEQFTDEQGNIVTKKIIRKVVRQVDSSGAIDTQQHEEDHTSTPKP"
ORIGIN      
        1 caatctgagg gccacatgca ggcgccgccc tgcaccctgg tccccgataa ggccttttct
       61 agttgcaggg tagttgtggc tagtctcctg gggcgagcct gttcttgctg ctctgacagc
      121 tctcccgccc tccggcccgc cggcggggtc ctggtcctga gcaacaagat gggcttctgt
      181 aaagccgatg ctgctaccag ctttttgcgg gcggcacgct caggaaacct ggacaaggct
      241 ttggatcacc tacgcaatgg agtggacatt aacacctgta accagaacgg gttgaatggc
      301 ttgcatctgg cctccaaaga aggccatgtg aagatggtgg ttgaacttct gcacaaagag
      361 atcattctag aaacaacaac caagaagggg aacactgctc tgcatatcgc tgcccttgct
      421 ggtcaggacg aggtggtccg ggagctggtc aactatggag ccaatgtcaa tgcccagtcc
      481 cagaaaggct tcactcccct gtacatggct gctcaagaga atcacttgga ggtggtgaag
      541 tttctcctgg agaatggagc caatcagaat gtagccacag aggatggctt cactccgctg
      601 gctgtggctc tgcagcaggg ccatgagaat gtggtggctc acctcatcaa ctatggaacg
      661 aaaggaaaag tgcgcctccc tgccctgcac atcgcggccc gcaacgatga cacacggaca
      721 gccgcagtcc ttctgcagaa tgaccccaac ccagatgtgc tttccaagac gggattcaca
      781 cccctccaca tcgcagcaca ctacgagaac ctcaacgtgg cccagctgct cctcaaccgg
      841 ggagccagcg tcaacttcac acctcagaat ggtattactc cactgcacat cgcctcccgc
      901 aggggaaatg tgatcatggt gagactcctg ctggaccgag gggctcagat agaaacgagg
      961 accaaggatg aactgacacc actccactgt gcagctcgga atggacacgt gagaatctca
     1021 gagatcctgc tggaccacgg ggcacccatc caagccaaaa ccaagaatgg cttgtccccc
     1081 atccacatgg cggctcaggg agaccacctc gactgtgtcc gacttctatt gcaatacaac
     1141 gccgagatag atgacatcac cttagatcac ctgactcctc tccacgtggc agcccactgc
     1201 ggccaccaca gggtggctaa ggttcttttg gataaagggg ccaagccgaa ctccagagcc
     1261 ctgaatggct ttaccccact acacatcgcc tgcaagaaga accacatacg tgtcatggag
     1321 ctgctgctga agacaggagc ctctattgac gcagtcactg agtctggcct gacacctctc
     1381 catgtagcct ccttcatggg acaccttcct attgtgaaga acttattaca gaggggagcg
     1441 tcacccaatg tctccaatgt gaaagtagaa accccattgc acatggcagc ccgagcaggg
     1501 catacagaag tggccaaata tttgctccag aacaaagcca aagccaatgc caaggccaag
     1561 gacgaccaga caccacttca ctgtgctgct cgcatcggcc acacgagcat ggtgaagctc
     1621 ctgctggaga atgacgccag ccccaacctg gctaccactg ctggccacac acctctgcac
     1681 accgcagccc gtgagggtca cgtggacaca gccctggccc tgctggaaaa ggaggcatcc
     1741 caagcctgca tgaccaagaa aggatttacc cctctccacg tggctgccaa gtatgggaag
     1801 gtccggctgg cagagctgct gctggaacat gatgcccatc ccaacgcggc cggaaagaac
     1861 ggcttgactc ccctgcatgt ggccgtccat cacaacaact tggacattgt ccagcttctc
     1921 cttccccgag gtggctcccc gcacagccct gcctggaatg gctacacccc tttgcacatc
     1981 gcagccaagc agaaccagat agaggtggcc cgcagtctac tgcaatacgg agggtccgcg
     2041 aatgcagagt ctgtacaagg agtgaccccg cttcacctgg ctgcccaaga gggccacacg
     2101 gaaatggtcg ctcttctcct gtcaaagcaa gccaatggca acctggggaa caagagtgga
     2161 ctcactcctc tccacctggt agcacaagaa ggccatgttc cagtggcgga tgtgctgatt
     2221 aaacatggcg tcacagtgga tgctacgacc cggatgggtt acaccccact ccacgtggcc
     2281 agtcactacg gaaacatcaa gctggtgaag ttcctgctac agcaccaggc agatgtcaac
     2341 gccaagacca agctagggta cagccccttg caccaggcag ctcagcaagg acacacggac
     2401 attgtgacat tgctcctgaa gaatggtgct tctccaaatg aggtcagctc gaacggaacc
     2461 acacctctgg caatagccaa acgtttgggc tacatctctg taacagacgt gctcaaggtg
     2521 gtcacagatg aaaccagtgt ggtgttagtc agtgacaaac accggatgag ctaccctgag
     2581 acagtggatg agatcctgga tgtgtctgaa gatgaaggaa ctgctcacat atctttaacg
     2641 ggtgacgaac ttgtcggctc gaaggctgaa aggcgggact cccgggatgt gggtgaggag
     2701 aaagagctgt tggattttgt gccgaagcta gaccaagtgg tggaatcccc agccatccca
     2761 aggatccctt gtgtcacgcc tgagactgtt gtgatccgat ccgaagatca ggaacaagca
     2821 tctaaagagt atgatgagga ctcactcatt cccagtagcc cagccacaga gacctcagac
     2881 aacatcagcc ccgtggctag ccccgtccac acagggtttc tggtgagctt catggtcgat
     2941 gcccggggag gatccatgag aggaagtcgt cataatggcc taagggtggt gatccctccc
     3001 cggacatgcg cagcacccac tcgcatcacc tgccgcctgg ttaagcccca gaagctaagc
     3061 acaccgcccc cgctggctga ggaggagggc ctagccagca ggatcattgc actgggtcct
     3121 acgggggccc agttccttag ccctgtgatc gtggaaatcc cccactttgc ctcccatggc
     3181 cgcggggacc gtgagctggt ggttctgagg agcgagaacg gctccgtgtg gaaggagcac
     3241 aagagccgct atggagaaag ctacctggac cagatcctga acggcatgga cgaagagctg
     3301 gggagcctgg aggagctgga gaagaagcgc gtgtgtcgca tcattaccac cgacttcccc
     3361 ctgtactttg tcatcatgtc ccggctctgc caggactacg acaccatcgg tcctgaaggg
     3421 ggctccctga gaagcaagct ggtgcccctg gtacaggcga cgttccccga aaacgcggtg
     3481 accaagaaag tgaagctggc tctgcaggcc cagcctgtcc cagacgagct ggtgaccaag
     3541 ctcctgggca accaggccac cttcagcccc attgttactg ttgagccaag gcgtcggaag
     3601 ttccaccgtc ccattgggct gcgaatccca ctccctccct catggactga caaccccagg
     3661 gacagcgggg agggagacac caccagccta cgcttactgt gcagcgtcat cggtggaact
     3721 gaccaagccc agtgggaaga tataacggga acaaccaagc ttgtatacgc caatgagtgc
     3781 gccaacttta ccaccaacgt ctcagccaga ttctggctgt cggactgtcc tcggaccgct
     3841 gaggccgtac actttgccac tctcttgtac aaagagctca cggcagttcc ctacatggcc
     3901 aagtttgtca ttttcgccaa gatgaacgac ccccgggaag gacggctacg ctgctactgc
     3961 atgacagatg acaaggtgga caagaccctg gaacagcatg aaaacttcgt ggaggtggcc
     4021 cggagcaggg acatagaggt tctagaaggg atgcctctgt ttgcagaact ctctgggaac
     4081 ttggtgcctg tcaagaaagc ggcccagcag cgaagcttcc atttccagtc atttcgagag
     4141 aatcgcctgg ccatccccgt gaaggtgagg gacagcagcc gcgagccagg agggttcttg
     4201 tcgttcctgc ggaagccgat gaaatatgaa gacgcacagc acatcctctg ccacttgaat
     4261 gtcaccatgc ccccctgtac caagggcagt ggagcagaag acaggagaag gaccctgacg
     4321 cccttgactc ttcgctatag cattctcagc gagtcccggc tgggttttac cagtgacaca
     4381 gaccgtgttg aaatgaagat ggctgtcatc agggagcacc tcggcctcag ctgggcagag
     4441 ctggcccggg agctgcagtt cagcgtggag gacatcaacc ggatccgtgt agaaaaccct
     4501 aactccttgt tggatcagag tacagccctg ctgaccctct gggtggaccg tgaaggcgaa
     4561 aatgcaaaga tggagaatct gtacacggcc ctgcggaaca tcgacagaag tgagattgtt
     4621 aacatgttgg agggctccgg caggcagagc agaaacctca aaccagaccg gaggcatggg
     4681 gaccgggagt actcattgtc accctcccag gtgaatggtt actcctcgct gcaggacgag
     4741 ctgctgtccc ccgcctccct gcactacgca cttccctctc cactgtgtgc agaccagtac
     4801 tggaacgaag tggccgtcat agacgccatc cccctggcgg ccacggagca tgacaccatg
     4861 ctggagatgt ctgacatgca ggtgtggtct tcgggcctca caccctccct ggtcactgct
     4921 gaggactcct ctctggagtg cagcaaggcc gaggactctg acgccatacc agagtggaag
     4981 ttggaggggg cacactcaga ggacacgcag ggcccggagc tgggctctca ggacctggtg
     5041 gaggacgaca cagtggattc agatgccaca aatggcctgg cagatttgct aggtcaggag
     5101 gaaggtcaga ggtcagaaaa gaagagtcag gaagtctcag gcacagagca ggacacagag
     5161 actgaagtgt ctcttgtttc aggccagcag cgagttcacg cccgaatcac agactcaccc
     5221 tcagtgaggc aggtgctgga cagaagccag gccagaacag tggactggta taaacagggt
     5281 tcagcagcat catatccaca agaggccgca caaagttcct ggcaagagga ggtcacgcaa
     5341 ggcccacagt cattccagag aaggatcacc accatccaag ggccggagcc cggcacactt
     5401 caggaatatg agcaggtggt ggtgtccacc agggagcatg tgcagagggg gccacctgag
     5461 agcgacagcc ccaaggccgg gaaggaccca agtctgtggg catcggagag tgccttctct
     5521 caagaggtgc agggggatga gcttcagaat attccaggag agcaggtgac agaggaacaa
     5581 ttcacagacg aacagggcaa cattgtcacc aagaagatca ttcgaaaagt cgtccgacag
     5641 gtggactcct ctggtgccat cgacacccag cagcacgagg aggatcacac ctcaacaccc
     5701 aaaccctgaa ctccacacac tcttgtcatg cacacgggag gagacctgga ccagagggct
     5761 actgaagggt cgcacgcgtt ctgagctccc cggcatgacc tctgtaagga gtttccttta
     5821 gtctcctatt cgcatgaatg actggctgta gacgcatgac ctacagtctt cagtcctgcc
     5881 tctagcgact atggatctct gtgggaatca ggacaaaggc ggcgagagaa gggagcggat
     5941 aaggagcccc aaagagcaca cgggtgcaga cacgaataag ggcttaccgt ggctgggatg
     6001 gttgatccgt ttgtttgcgt tttgttttga tttttgactt caaactcatt tgtaagaaat
     6061 tcacacgatc tttctggacc gagggaacgg gaaacggcgt gaaatcagtt tagccctttg
     6121 tcctcgtgta ccagtctcct ataccccccc acacaccaca tgccactcgt ccccgcccca
     6181 cccccacccc cgtggaggga ctgctcttcc cagaatgaca tgacacaggt gcacacacgc
     6241 aggtcttccc ttcactcagt ctacactgat tttactgtga cctctgaagc cgtatggata
     6301 aactggattt attttttttt tttatgttgt ctctcagttt cagtattaac tcaccttcca
     6361 gtgggagatc atcaccctga gagtgcactc ggggttcctt gtgttagaaa tttaagaact
     6421 gaggcaagga gcccctaggc tttgctgtag ggctcaaagg ggagccaggg tcccatctcg
     6481 aagttctctg ctggggaagg acctgtggct gtccgaggat cgcaccagca tgtccgatag
     6541 aggaaggggt tttctaaacc gtcaagtact tctataatag tctgtgttca aagtgtaaac
     6601 tgttacagta atcagccttg tgtatatgaa aacaataaat actatgcaaa ccaatagaaa
     6661 cacgttagca gtatgtacag agccctaaag agctcagctc cagaggactt ctccaggctg
     6721 tgggaggagc taaaggctgt ctttcactga atgaggaagg gagtagggct gtgaatgtac
     6781 ctgccagttc ctaggtcaga ccaccctgag gtctcccaga gccaacttgg tgcttgaagt
     6841 gcagtgcaag tggccgcagt ctggaggtcc tgacacagac agctgggctc aggctggtcg
     6901 gccaagtgcc tggctctgac cacgggccca gcgcaaggag agccggagca ggatagaact
     6961 gctgaccagg aggctgagga gagaccctct tctatctaga ctcagggcca ggccaggaag
     7021 ggaaccctca actggctggt cttgccttgg agccctcagg gaagagcctt aacgtcacac
     7081 tagagtctcc tgcagaggga ggcccgaatc agcacaatcc ggctccgcca tgcccgggcg
     7141 gcgcccccta gggccaggag agagactggc aggctcttct cgctctcccg gagccactgg
     7201 tggacagcgg tcaccttcct cgcctgccgc tcttcggggt gtcgtcggga cacaataaaa
     7261 accttccaag tagcacagac gcccctccat gcccgtaccc ccacgccctg gaggccctcc
     7321 cggggactcc agcccgcgcg cgctctagcc ccgggccggt gcgcgagttg gggggggggg
     7381 gaggatgctg tggtccgcgg gcgtggctgg cttccctggg ggggaggggg cggcggcccc
     7441 cggagggcgg gcgaggattg gcgcggggtc gccccgcctc gccccgcccc ctccgcccag
     7501 tagcgcctcc tagcgccctg cgcggccgac tccgctttgg caccctccgc tcggtctggc
     7561 ttggctgctt ggcacgccgc ccccgcccac ggcggcatgg ctgcgcgctc ccgttgctag
     7621 taggagctgt tttaggagga gtttggggtc tccacttgat gcctagagaa tgctgcagtc
     7681 tgcaccttag acgcttttta gaagttttga aatgattttt ttaattgtta tgaaaaaaat
     7741 gaactatgtc ttggctctct ctcacatgct ctgttactga gagagaccag cccaccctac
     7801 tctgatgtat agaccattct ccctacacca gctaaacaaa tgtcaaatta ataaagaaat
     7861 ggactcatgg ca
//
