LOCUS       XM_039094568            7982 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ankyrin 1 (Ank1), transcript variant
            X6, mRNA.
ACCESSION   XM_039094568
VERSION     XM_039094568.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094568.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7982
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7982
                     /gene="Ank1"
                     /note="ankyrin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 14 ESTs, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:306570"
                     /db_xref="RGD:1309620"
     CDS             16..5766
                     /gene="Ank1"
                     /codon_start=1
                     /product="ankyrin-1 isoform X6"
                     /protein_id="XP_038950496.1"
                     /db_xref="GeneID:306570"
                     /db_xref="RGD:1309620"
                     /translation="MQAPPCTLVPDKAFSSCRVVVASLLGRACSCCSDSSPALRPAGG
                     VLVLSNKMGFCKADAATSFLRAARSGNLDKALDHLRNGVDINTCNQNGLNGLHLASKE
                     GHVKMVVELLHKEIILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFT
                     PLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGK
                     VRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRG
                     ASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRI
                     SEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITLDHLTPLHVA
                     AHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMELLLKTGASIDAVTES
                     GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA
                     KANAKAKDDQTPLHCAARIGHTSMVKLLLENDASPNLATTAGHTPLHTAAREGHVDTA
                     LALLEKEASQACMTKKGFTPLHVAAKYGKVRLAELLLEHDAHPNAAGKNGLTPLHVAV
                     HHNNLDIVQLLLPRGGSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGSANAESVQG
                     VTPLHLAAQEGHTEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVT
                     VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT
                     LLLKNGASPNEVSSNGTTPLAIAKRLGYISVTDVLKVVTDETSVVLVSDKHRMSYPET
                     VDEILDVSEDEGTAHISLTGDELVGSKAERRDSRDVGEEKELLDFVPKLDQVVESPAI
                     PRIPCVTPETVVIRSEDQEQASKEYDEDSLIPSSPATETSDNISPVASPVHTGFLVSF
                     MVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRI
                     IALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHKSRYGESYLDQIL
                     NGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSRLCQDYDTIGPEGGSLRSKLVPLV
                     QATFPENAVTKKVKLALQAQPVPDELVTKLLGNQATFSPIVTVEPRRRKFHRPIGLRI
                     PLPPSWTDNPRDSGEGDTTSLRLLCSVIGGTDQAQWEDITGTTKLVYANECANFTTNV
                     SARFWLSDCPRTAEAVHFATLLYKELTAVPYMAKFVIFAKMNDPREGRLRCYCMTDDK
                     VDKTLEQHENFVEVARSRDIEVLEGMPLFAELSGNLVPVKKAAQQRSFHFQSFRENRL
                     AIPVKVRDSSREPGGFLSFLRKPMKYEDAQHILCHLNVTMPPCTKGSGAEDRRRTLTP
                     LTLRYSILSESRLGFTSDTDRVEMKMAVIREHLGLSWAELARELQFSVEDINRIRVEN
                     PNSLLDQSTALLTLWVDREGENAKMENLYTALRNIDRSEIVNMLEGSGRQSRNLKPDR
                     RHGDREYSLSPSQVNGYSSLQDELLSPASLHYALPSPLCADQYWNEVAVIDAIPLAAT
                     EHDTMLEMSDMQVWSSGLTPSLVTAEDSSLECSKAEDSDAIPEWKLEGAHSEDTQGPE
                     LGSQDLVEDDTVDSDATNGLADLLGQQRVHARITDSPSVRQVLDRSQARTVDWYKQGS
                     AASYPQEAAQSSWQEEVTQGPQSFQRRITTIQGPEPGTLQEYEQVVVSTREHVQRGPP
                     ESDSPKAGKDPSLWASESAFSQEVQGDELQNIPGEQVTEEQFTDEQGNIVTKKIIRKV
                     VRQVDSSGAIDTQQHEEVIVEGPLADPGDLEADIESFMKLTKVELRGSGLQPDLIEGR
                     KGAQIVKRASLKRGKQ"
ORIGIN      
        1 caatctgagg gccacatgca ggcgccgccc tgcaccctgg tccccgataa ggccttttct
       61 agttgcaggg tagttgtggc tagtctcctg gggcgagcct gttcttgctg ctctgacagc
      121 tctcccgccc tccggcccgc cggcggggtc ctggtcctga gcaacaagat gggcttctgt
      181 aaagccgatg ctgctaccag ctttttgcgg gcggcacgct caggaaacct ggacaaggct
      241 ttggatcacc tacgcaatgg agtggacatt aacacctgta accagaacgg gttgaatggc
      301 ttgcatctgg cctccaaaga aggccatgtg aagatggtgg ttgaacttct gcacaaagag
      361 atcattctag aaacaacaac caagaagggg aacactgctc tgcatatcgc tgcccttgct
      421 ggtcaggacg aggtggtccg ggagctggtc aactatggag ccaatgtcaa tgcccagtcc
      481 cagaaaggct tcactcccct gtacatggct gctcaagaga atcacttgga ggtggtgaag
      541 tttctcctgg agaatggagc caatcagaat gtagccacag aggatggctt cactccgctg
      601 gctgtggctc tgcagcaggg ccatgagaat gtggtggctc acctcatcaa ctatggaacg
      661 aaaggaaaag tgcgcctccc tgccctgcac atcgcggccc gcaacgatga cacacggaca
      721 gccgcagtcc ttctgcagaa tgaccccaac ccagatgtgc tttccaagac gggattcaca
      781 cccctccaca tcgcagcaca ctacgagaac ctcaacgtgg cccagctgct cctcaaccgg
      841 ggagccagcg tcaacttcac acctcagaat ggtattactc cactgcacat cgcctcccgc
      901 aggggaaatg tgatcatggt gagactcctg ctggaccgag gggctcagat agaaacgagg
      961 accaaggatg aactgacacc actccactgt gcagctcgga atggacacgt gagaatctca
     1021 gagatcctgc tggaccacgg ggcacccatc caagccaaaa ccaagaatgg cttgtccccc
     1081 atccacatgg cggctcaggg agaccacctc gactgtgtcc gacttctatt gcaatacaac
     1141 gccgagatag atgacatcac cttagatcac ctgactcctc tccacgtggc agcccactgc
     1201 ggccaccaca gggtggctaa ggttcttttg gataaagggg ccaagccgaa ctccagagcc
     1261 ctgaatggct ttaccccact acacatcgcc tgcaagaaga accacatacg tgtcatggag
     1321 ctgctgctga agacaggagc ctctattgac gcagtcactg agtctggcct gacacctctc
     1381 catgtagcct ccttcatggg acaccttcct attgtgaaga acttattaca gaggggagcg
     1441 tcacccaatg tctccaatgt gaaagtagaa accccattgc acatggcagc ccgagcaggg
     1501 catacagaag tggccaaata tttgctccag aacaaagcca aagccaatgc caaggccaag
     1561 gacgaccaga caccacttca ctgtgctgct cgcatcggcc acacgagcat ggtgaagctc
     1621 ctgctggaga atgacgccag ccccaacctg gctaccactg ctggccacac acctctgcac
     1681 accgcagccc gtgagggtca cgtggacaca gccctggccc tgctggaaaa ggaggcatcc
     1741 caagcctgca tgaccaagaa aggatttacc cctctccacg tggctgccaa gtatgggaag
     1801 gtccggctgg cagagctgct gctggaacat gatgcccatc ccaacgcggc cggaaagaac
     1861 ggcttgactc ccctgcatgt ggccgtccat cacaacaact tggacattgt ccagcttctc
     1921 cttccccgag gtggctcccc gcacagccct gcctggaatg gctacacccc tttgcacatc
     1981 gcagccaagc agaaccagat agaggtggcc cgcagtctac tgcaatacgg agggtccgcg
     2041 aatgcagagt ctgtacaagg agtgaccccg cttcacctgg ctgcccaaga gggccacacg
     2101 gaaatggtcg ctcttctcct gtcaaagcaa gccaatggca acctggggaa caagagtgga
     2161 ctcactcctc tccacctggt agcacaagaa ggccatgttc cagtggcgga tgtgctgatt
     2221 aaacatggcg tcacagtgga tgctacgacc cggatgggtt acaccccact ccacgtggcc
     2281 agtcactacg gaaacatcaa gctggtgaag ttcctgctac agcaccaggc agatgtcaac
     2341 gccaagacca agctagggta cagccccttg caccaggcag ctcagcaagg acacacggac
     2401 attgtgacat tgctcctgaa gaatggtgct tctccaaatg aggtcagctc gaacggaacc
     2461 acacctctgg caatagccaa acgtttgggc tacatctctg taacagacgt gctcaaggtg
     2521 gtcacagatg aaaccagtgt ggtgttagtc agtgacaaac accggatgag ctaccctgag
     2581 acagtggatg agatcctgga tgtgtctgaa gatgaaggaa ctgctcacat atctttaacg
     2641 ggtgacgaac ttgtcggctc gaaggctgaa aggcgggact cccgggatgt gggtgaggag
     2701 aaagagctgt tggattttgt gccgaagcta gaccaagtgg tggaatcccc agccatccca
     2761 aggatccctt gtgtcacgcc tgagactgtt gtgatccgat ccgaagatca ggaacaagca
     2821 tctaaagagt atgatgagga ctcactcatt cccagtagcc cagccacaga gacctcagac
     2881 aacatcagcc ccgtggctag ccccgtccac acagggtttc tggtgagctt catggtcgat
     2941 gcccggggag gatccatgag aggaagtcgt cataatggcc taagggtggt gatccctccc
     3001 cggacatgcg cagcacccac tcgcatcacc tgccgcctgg ttaagcccca gaagctaagc
     3061 acaccgcccc cgctggctga ggaggagggc ctagccagca ggatcattgc actgggtcct
     3121 acgggggccc agttccttag ccctgtgatc gtggaaatcc cccactttgc ctcccatggc
     3181 cgcggggacc gtgagctggt ggttctgagg agcgagaacg gctccgtgtg gaaggagcac
     3241 aagagccgct atggagaaag ctacctggac cagatcctga acggcatgga cgaagagctg
     3301 gggagcctgg aggagctgga gaagaagcgc gtgtgtcgca tcattaccac cgacttcccc
     3361 ctgtactttg tcatcatgtc ccggctctgc caggactacg acaccatcgg tcctgaaggg
     3421 ggctccctga gaagcaagct ggtgcccctg gtacaggcga cgttccccga aaacgcggtg
     3481 accaagaaag tgaagctggc tctgcaggcc cagcctgtcc cagacgagct ggtgaccaag
     3541 ctcctgggca accaggccac cttcagcccc attgttactg ttgagccaag gcgtcggaag
     3601 ttccaccgtc ccattgggct gcgaatccca ctccctccct catggactga caaccccagg
     3661 gacagcgggg agggagacac caccagccta cgcttactgt gcagcgtcat cggtggaact
     3721 gaccaagccc agtgggaaga tataacggga acaaccaagc ttgtatacgc caatgagtgc
     3781 gccaacttta ccaccaacgt ctcagccaga ttctggctgt cggactgtcc tcggaccgct
     3841 gaggccgtac actttgccac tctcttgtac aaagagctca cggcagttcc ctacatggcc
     3901 aagtttgtca ttttcgccaa gatgaacgac ccccgggaag gacggctacg ctgctactgc
     3961 atgacagatg acaaggtgga caagaccctg gaacagcatg aaaacttcgt ggaggtggcc
     4021 cggagcaggg acatagaggt tctagaaggg atgcctctgt ttgcagaact ctctgggaac
     4081 ttggtgcctg tcaagaaagc ggcccagcag cgaagcttcc atttccagtc atttcgagag
     4141 aatcgcctgg ccatccccgt gaaggtgagg gacagcagcc gcgagccagg agggttcttg
     4201 tcgttcctgc ggaagccgat gaaatatgaa gacgcacagc acatcctctg ccacttgaat
     4261 gtcaccatgc ccccctgtac caagggcagt ggagcagaag acaggagaag gaccctgacg
     4321 cccttgactc ttcgctatag cattctcagc gagtcccggc tgggttttac cagtgacaca
     4381 gaccgtgttg aaatgaagat ggctgtcatc agggagcacc tcggcctcag ctgggcagag
     4441 ctggcccggg agctgcagtt cagcgtggag gacatcaacc ggatccgtgt agaaaaccct
     4501 aactccttgt tggatcagag tacagccctg ctgaccctct gggtggaccg tgaaggcgaa
     4561 aatgcaaaga tggagaatct gtacacggcc ctgcggaaca tcgacagaag tgagattgtt
     4621 aacatgttgg agggctccgg caggcagagc agaaacctca aaccagaccg gaggcatggg
     4681 gaccgggagt actcattgtc accctcccag gtgaatggtt actcctcgct gcaggacgag
     4741 ctgctgtccc ccgcctccct gcactacgca cttccctctc cactgtgtgc agaccagtac
     4801 tggaacgaag tggccgtcat agacgccatc cccctggcgg ccacggagca tgacaccatg
     4861 ctggagatgt ctgacatgca ggtgtggtct tcgggcctca caccctccct ggtcactgct
     4921 gaggactcct ctctggagtg cagcaaggcc gaggactctg acgccatacc agagtggaag
     4981 ttggaggggg cacactcaga ggacacgcag ggcccggagc tgggctctca ggacctggtg
     5041 gaggacgaca cagtggattc agatgccaca aatggcctgg cagatttgct aggccagcag
     5101 cgagttcacg cccgaatcac agactcaccc tcagtgaggc aggtgctgga cagaagccag
     5161 gccagaacag tggactggta taaacagggt tcagcagcat catatccaca agaggccgca
     5221 caaagttcct ggcaagagga ggtcacgcaa ggcccacagt cattccagag aaggatcacc
     5281 accatccaag ggccggagcc cggcacactt caggaatatg agcaggtggt ggtgtccacc
     5341 agggagcatg tgcagagggg gccacctgag agcgacagcc ccaaggccgg gaaggaccca
     5401 agtctgtggg catcggagag tgccttctct caagaggtgc agggggatga gcttcagaat
     5461 attccaggag agcaggtgac agaggaacaa ttcacagacg aacagggcaa cattgtcacc
     5521 aagaagatca ttcgaaaagt cgtccgacag gtggactcct ctggtgccat cgacacccag
     5581 cagcacgagg aggtgattgt tgagggaccc ctggcagacc ctggggatct ggaagcggac
     5641 attgagtcct ttatgaaact tactaaggtg gagctaagag ggagtggact ccagccggac
     5701 ctgatagaag gcaggaaggg ggctcaaata gtgaagcggg ccagcttgaa aaggggcaaa
     5761 cagtgacctc tcctcaagta gccccttggg aggatcacac ctcaacaccc aaaccctgaa
     5821 ctccacacac tcttgtcatg cacacgggag gagacctgga ccagagggct actgaagggt
     5881 cgcacgcgtt ctgagctccc cggcatgacc tctgtaagga gtttccttta gtctcctatt
     5941 cgcatgaatg actggctgta gacgcatgac ctacagtctt cagtcctgcc tctagcgact
     6001 atggatctct gtgggaatca ggacaaaggc ggcgagagaa gggagcggat aaggagcccc
     6061 aaagagcaca cgggtgcaga cacgaataag ggcttaccgt ggctgggatg gttgatccgt
     6121 ttgtttgcgt tttgttttga tttttgactt caaactcatt tgtaagaaat tcacacgatc
     6181 tttctggacc gagggaacgg gaaacggcgt gaaatcagtt tagccctttg tcctcgtgta
     6241 ccagtctcct ataccccccc acacaccaca tgccactcgt ccccgcccca cccccacccc
     6301 cgtggaggga ctgctcttcc cagaatgaca tgacacaggt gcacacacgc aggtcttccc
     6361 ttcactcagt ctacactgat tttactgtga cctctgaagc cgtatggata aactggattt
     6421 attttttttt tttatgttgt ctctcagttt cagtattaac tcaccttcca gtgggagatc
     6481 atcaccctga gagtgcactc ggggttcctt gtgttagaaa tttaagaact gaggcaagga
     6541 gcccctaggc tttgctgtag ggctcaaagg ggagccaggg tcccatctcg aagttctctg
     6601 ctggggaagg acctgtggct gtccgaggat cgcaccagca tgtccgatag aggaaggggt
     6661 tttctaaacc gtcaagtact tctataatag tctgtgttca aagtgtaaac tgttacagta
     6721 atcagccttg tgtatatgaa aacaataaat actatgcaaa ccaatagaaa cacgttagca
     6781 gtatgtacag agccctaaag agctcagctc cagaggactt ctccaggctg tgggaggagc
     6841 taaaggctgt ctttcactga atgaggaagg gagtagggct gtgaatgtac ctgccagttc
     6901 ctaggtcaga ccaccctgag gtctcccaga gccaacttgg tgcttgaagt gcagtgcaag
     6961 tggccgcagt ctggaggtcc tgacacagac agctgggctc aggctggtcg gccaagtgcc
     7021 tggctctgac cacgggccca gcgcaaggag agccggagca ggatagaact gctgaccagg
     7081 aggctgagga gagaccctct tctatctaga ctcagggcca ggccaggaag ggaaccctca
     7141 actggctggt cttgccttgg agccctcagg gaagagcctt aacgtcacac tagagtctcc
     7201 tgcagaggga ggcccgaatc agcacaatcc ggctccgcca tgcccgggcg gcgcccccta
     7261 gggccaggag agagactggc aggctcttct cgctctcccg gagccactgg tggacagcgg
     7321 tcaccttcct cgcctgccgc tcttcggggt gtcgtcggga cacaataaaa accttccaag
     7381 tagcacagac gcccctccat gcccgtaccc ccacgccctg gaggccctcc cggggactcc
     7441 agcccgcgcg cgctctagcc ccgggccggt gcgcgagttg gggggggggg gaggatgctg
     7501 tggtccgcgg gcgtggctgg cttccctggg ggggaggggg cggcggcccc cggagggcgg
     7561 gcgaggattg gcgcggggtc gccccgcctc gccccgcccc ctccgcccag tagcgcctcc
     7621 tagcgccctg cgcggccgac tccgctttgg caccctccgc tcggtctggc ttggctgctt
     7681 ggcacgccgc ccccgcccac ggcggcatgg ctgcgcgctc ccgttgctag taggagctgt
     7741 tttaggagga gtttggggtc tccacttgat gcctagagaa tgctgcagtc tgcaccttag
     7801 acgcttttta gaagttttga aatgattttt ttaattgtta tgaaaaaaat gaactatgtc
     7861 ttggctctct ctcacatgct ctgttactga gagagaccag cccaccctac tctgatgtat
     7921 agaccattct ccctacacca gctaaacaaa tgtcaaatta ataaagaaat ggactcatgg
     7981 ca
//
