LOCUS       XM_039100513            1936 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus anomalous homeobox (Anhx), mRNA.
ACCESSION   XM_039100513
VERSION     XM_039100513.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100513.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 19% of CDS bases
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-864               JACYVU010000392.1  1255173-1256036     c
            865-992             JACYVU010000392.1  1243833-1243960     c
            993-1116            JACYVU010000392.1  1241356-1241479     c
            1117-1143           JACYVU010000392.1  1240519-1240545     c
            1144-1301           JACYVU010000392.1  1240360-1240517     c
            1302-1615           JACYVU010000392.1  1238925-1239238     c
            1616-1734           JACYVU010000392.1  1233015-1233133     c
            1735-1936           JACYVU010000392.1  1232544-1232745     c
FEATURES             Location/Qualifiers
     source          1..1936
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1936
                     /gene="Anhx"
                     /note="anomalous homeobox; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: deleted 1
                     base in 1 codon; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 Proteins, and 77%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:120099340"
                     /db_xref="RGD:41216075"
     CDS             598..1857
                     /gene="Anhx"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:1762..1764,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: anomalous homeobox protein"
                     /protein_id="XP_038956441.1"
                     /db_xref="GeneID:120099340"
                     /db_xref="RGD:41216075"
                     /translation="MFSVDRMQDFLRLLREHGDTSSPPPDLLTLAGKLCWDFQDKPVQ
                     VLHLVEAILNSKLCWDLLNNADVNLVCAQVLFQQEQHHLALQILEVCHVPGGSQELTH
                     LWNNIHYHLTMRRLGVTKLSSAQRFRCTKRNPPSLTICLENPKNWNFPPEVHSYLQDF
                     ARGVSAYPKKVQLEKLALETGLNTEQVYNWFANYRWHQKALLQHVARAQMAISEVPGE
                     RIMFLSQCSSQETIVSLSLYGWERHPEWRGHHAASLTPMAPANGPGLCSLAAGSNMLD
                     SSVNVPASCMMPLTLPSSKEVFLPVEQLEQPFHKQYLNSGMGMDLEVVPMSMAVAALS
                     DLSHAAQLYKIELFSFSSLEVMPALPAMPAPLSTMKLSQPLPFSKVQRADDQPSXDAF
                     WGATMLLEFSEGPLGQTAHVEMEQHME"
ORIGIN      
        1 aaacaggatc tctgcgctga ggttttatgc ctgaaaatct ctcgacatgt tgcaccgatg
       61 tcctcggtgg gggggggggt ctcttcaagc ttcaaaattt gctgagaaat tgctgagatt
      121 tgtgttctag cagctccctc ctgttgtaag atgctccagg acccagcatt tcgatctgga
      181 aatcagtgtt ccatgctctg aaaagagcga ttgtctgtaa ttggatgacc gtcatgtcac
      241 ccatgcagca gatgccaagg cttctgggaa acccacagag gatacagcaa agagcaaatg
      301 gaaacccaat cctagcttct gtgaaaccat ggagcatagg aagaaggatt gaggctcaga
      361 aagttgagat tgggtggttg cagagtgccc tgctcagtgg tctctgcaca gttgctttca
      421 tcaagagcag ggttattttg gggagctaga aggaggatgt gagaaagcac ccgagctttt
      481 cccaagtgag ttatgccacc ttggacatgg tataacctga ggctcaatat catctgtctc
      541 gtgtaatggg tctgaagagt ggtggataga aactagttga tatcagtgtt actctgaatg
      601 ttctcagttg acaggatgca ggacttcctg aggctgctga gggagcatgg ggacaccagc
      661 tctcccccac cagacttgtt gaccctggca ggcaagctgt gttgggactt ccaagacaaa
      721 cctgttcagg tgctacattt ggtggaagcc attctgaaca gcaagctttg ctgggatctt
      781 ctgaacaatg cagacgtgaa tctggtatgt gctcaggtcc tgttccagca ggagcagcac
      841 catttagccc tccagattct agaggtgtgt cacgtgccag gaggcagcca ggagctgaca
      901 catctctgga ataacatcca ctaccacttg accatgagga ggctgggtgt caccaagctg
      961 agttcagcac agaggtttcg atgcacaaag aggaatccac catcccttac catctgtctt
     1021 gagaatccta agaactggaa ctttccccca gaggttcaca gctatctgca ggactttgcc
     1081 agaggtgtaa gtgcttatcc caagaaggtc cagttggaaa aactggcttt ggagacaggc
     1141 ttgaatactg agcaggtgta caactggttt gctaattatc ggtggcatca gaaggctctt
     1201 ctccagcatg tggcaagagc ccagatggcc atatcagaag ttcctgggga aaggatcatg
     1261 ttcctgagcc agtgcagctc tcaggaaacc attgtgagtt tgtcactata tggatgggaa
     1321 aggcacccgg agtggcgagg tcatcatgct gccagcctca cacccatggc ccctgccaat
     1381 gggcctggcc tctgctctct ggctgctggc agtaacatgc ttgattcctc cgtgaatgtc
     1441 cctgcatctt gtatgatgcc ccttacactg ccatcctcca aggaagtttt cctcccagtg
     1501 gagcaactgg agcaaccgtt tcataaacaa tatctgaact ctgggatggg gatggatctt
     1561 gaagttgttc ctatgtccat ggctgttgct gccctcagtg atctcagcca tgcagcacag
     1621 ttgtataaga tagagctctt ctctttcagt tctctggaag tgatgccagc attacctgcc
     1681 atgccagcac ctctgtccac gatgaagctg agccaaccct tgcccttcag caaggtacaa
     1741 agggctgatg accagccctc atgagatgct ttctggggag ccacaatgct ccttgagttt
     1801 tctgagggac ccctgggcca aaccgcccat gtagagatgg agcagcacat ggaatgaaca
     1861 agtgtggact gtgcatctgt tcaaaacgag tttcagagat tcactgtgaa caaaaatcga
     1921 tgttcccaga gttcct
//
