LOCUS       NM_001401388            4325 bp    mRNA    linear   ROD 22-SEP-2024
DEFINITION  Rattus norvegicus angel homolog 2 (Angel2), transcript variant 2,
            mRNA.
ACCESSION   NM_001401388 XM_039090819
VERSION     NM_001401388.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4325)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 4325)
  AUTHORS   Yi,X., Hong,M., Gui,B., Chen,Z., Li,L., Xie,G., Liang,J., Wang,X.
            and Shang,Y.
  TITLE     RNA processing and modification protein, carbon catabolite
            repression 4 (Ccr4), arrests the cell cycle through p21-dependent
            and p53-independent pathway
  JOURNAL   J Biol Chem 287 (25), 21045-21057 (2012)
   PUBMED   22547059
REFERENCE   3  (bases 1 to 4325)
  AUTHORS   Wagner,E., Clement,S.L. and Lykke-Andersen,J.
  TITLE     An unconventional human Ccr4-Caf1 deadenylase complex in nuclear
            cajal bodies
  JOURNAL   Mol Cell Biol 27 (5), 1686-1695 (2007)
   PUBMED   17178830
REFERENCE   4  (bases 1 to 4325)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Feb 10, 2022 this sequence version replaced XM_039090819.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.1324118.1,
                                           SRR26360190.2957900.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-229               JAXUCZ010000013.1  105041728-105041956
            230-555             JAXUCZ010000013.1  105044636-105044961
            556-812             JAXUCZ010000013.1  105049022-105049278
            813-882             JAXUCZ010000013.1  105050622-105050691
            883-1304            JAXUCZ010000013.1  105052486-105052907
            1305-1431           JAXUCZ010000013.1  105053692-105053818
            1432-1489           JAXUCZ010000013.1  105054414-105054471
            1490-1653           JAXUCZ010000013.1  105056847-105057010
            1654-4325           JAXUCZ010000013.1  105057969-105060640
FEATURES             Location/Qualifiers
     source          1..4325
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q27"
     gene            1..4325
                     /gene="Angel2"
                     /gene_synonym="RGD1305056"
                     /note="angel homolog 2"
                     /db_xref="GeneID:305035"
                     /db_xref="RGD:1305056"
     exon            1..229
                     /gene="Angel2"
                     /gene_synonym="RGD1305056"
                     /inference="alignment:Splign:2.1.0"
     CDS             171..1805
                     /gene="Angel2"
                     /gene_synonym="RGD1305056"
                     /note="isoform 2 is encoded by transcript variant 2;
                     protein angel homolog 2"
                     /codon_start=1
                     /product="protein angel homolog 2 isoform 2"
                     /protein_id="NP_001388317.1"
                     /db_xref="GeneID:305035"
                     /db_xref="RGD:1305056"
                     /translation="METWRCVRRGYGRCVAGRGRYSMLPYPLKSLGRDWTTPWEDLQK
                     YCWRRHISSCLRWPGHYSRAPYPYFSSRHFSLNCRPPFLFESGTQFQYYNWRPDQLSN
                     TSLFHLSRYVMNSDRDEPSSKRRKHQGTIKRSWEYLCSHNKEKTKDLEDRNGDSTCED
                     CEDKFDFSVMSYNILSQELLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCL
                     QEVQEDHYGTEIRPSLESLGYHCEYKMKTGRKPDGCAICFKHSKFSLLSVNPVEFCRR
                     DIPLLDRDNIGLVLLLQPKIPRAASPSICIANTHLLYNPRRGDIKLTQLAMLLAEISN
                     VAHQKDGSFCPIVMCGDFNSVPGSPLYSFIKEGKLNYEGLAIGKVSGQEQSSRGQRIL
                     SIPIWPPNLGISQNCVYEAQQVPKVEKTDSDVTQAQQEKAEVPVPADKVSSHLQHGFS
                     LSSVYSHYVPDTGVPEVTTCHSRSAITVDYIFYSAEKDDTARGPGAEVALVGGLKLLA
                     RLSLLTEQDLWTVNGLPNEHNSSDHLPLLAKFRLEL"
     exon            230..555
                     /gene="Angel2"
                     /gene_synonym="RGD1305056"
                     /inference="alignment:Splign:2.1.0"
     exon            556..812
                     /gene="Angel2"
                     /gene_synonym="RGD1305056"
                     /inference="alignment:Splign:2.1.0"
     exon            813..882
                     /gene="Angel2"
                     /gene_synonym="RGD1305056"
                     /inference="alignment:Splign:2.1.0"
     exon            883..1304
                     /gene="Angel2"
                     /gene_synonym="RGD1305056"
                     /inference="alignment:Splign:2.1.0"
     exon            1305..1431
                     /gene="Angel2"
                     /gene_synonym="RGD1305056"
                     /inference="alignment:Splign:2.1.0"
     exon            1432..1489
                     /gene="Angel2"
                     /gene_synonym="RGD1305056"
                     /inference="alignment:Splign:2.1.0"
     exon            1490..1653
                     /gene="Angel2"
                     /gene_synonym="RGD1305056"
                     /inference="alignment:Splign:2.1.0"
     exon            1654..4325
                     /gene="Angel2"
                     /gene_synonym="RGD1305056"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaattgccc agaaggcaag atggcgaccc gacttgcggc tagacgctcc tcccagcatg
       61 cctagcggcc ggccgggagc cgagtgatgg gaatccggta gggcccagct agtggccagg
      121 gctgaggtgc atccgcgggc ccgggcgttg ggcgcttaca gagagccaag atggagacgt
      181 ggcgctgtgt cagaaggggc tacggccgct gtgtggcggg gcgaggccgg tactccatgc
      241 ttccctatcc tctaaagagt ttgggtcgag actggaccac gccgtgggag gatctgcaga
      301 aatattgctg gcgcagacac atttccagtt gtctgaggtg gccaggacat tactcacggg
      361 caccttaccc atacttcagt agccggcatt tctcattgaa ctgtagaccg ccttttctgt
      421 ttgagtctgg gactcagttt cagtactaca attggaggcc tgaccaactg agtaatacat
      481 ccttgttcca tctctctcgt tacgtgatga actctgacag agatgagccc tcatctaaac
      541 gaagaaaaca ccaaggaaca ataaaaagga gttgggagta tttatgtagc cataataaag
      601 agaaaacgaa ggacctagaa gacagaaatg gtgactccac atgtgaggac tgtgaagata
      661 agtttgactt ctcagtgatg tcttacaaca tactctcgca ggagttactg gaggacaact
      721 cgcacctcta cagacattgc cgacgcccag tgttacactg gagtttccgg tttcccaata
      781 ttttgaagga aatcaaacat tttgatgctg atgtgctttg tctacaggaa gttcaagaag
      841 atcattacgg gacagagatc aggccaagtc tggaatcact gggttatcac tgtgaatata
      901 agatgaaaac aggaaggaaa cccgatggtt gtgccatctg cttcaaacat tccaagttct
      961 cactcttatc tgtgaaccca gtggagttct gccgccgtga tattcctctg ttggacagag
     1021 acaacattgg attggtttta ctcctgcagc ctaagatccc acgtgctgcc tctccatcca
     1081 tctgcatagc taacacacat ctgttgtata acccacggcg cggtgatatt aagctgaccc
     1141 agctggcaat gctgctagca gagatttcca atgtggccca tcagaaagat ggcagcttct
     1201 gtcccattgt catgtgtggt gactttaatt ctgttcctgg ttctccactc tacagtttca
     1261 taaaggaagg aaaattaaat tatgaaggtc ttgcgattgg aaaggtatct ggccaggaac
     1321 agtcttcacg gggacaaaga attttatcta ttccaatttg gcccccaaac ctaggcatct
     1381 ctcagaactg tgtttatgag gcacagcagg ttcccaaagt agaaaagaca gacagtgatg
     1441 tgactcaagc acagcaggag aaagcagagg tcccagtgcc agctgacaaa gtgtcctcac
     1501 atctgcagca tggcttcagc ttgtcctctg tctattccca ttatgttcct gacactggcg
     1561 tcccagaggt gaccacctgc cattcccgaa gtgccataac agtcgactac attttctact
     1621 ctgcagagaa ggacgacact gctcgtggtc caggagctga agttgctttg gttggtggct
     1681 tgaaacttct agctagactg tcacttctga cagaacaaga cttgtggact gtgaatggcc
     1741 ttcccaatga gcacaactcc tcagaccacc tgcctttgct ggccaagttc aggcttgagc
     1801 tctgaccatt gctcattcac agaacttcct gtctgtattc tttttaaagg ctgtgaaaat
     1861 tttaagtgtt tgcatgctgt tcatttttgt gattggggtt ctggatttct gttatgtgct
     1921 tgaaacagat tggaagaaag aaatttacaa ctttttttaa tgaaatattt tcctgataac
     1981 tgatgtctaa agaacgttat tgtaaatgac ttctaagttc tggtgaagtt gacagcattt
     2041 taaaaatgta gttcacctcc ttggccctca agataggaag tcagtgcttt tttgtacgtc
     2101 aggtggtcct accaggactg caatactcag cttgatgcct tttctggaga ctgaatttca
     2161 ttgggagatg cctgtgcttg ttcttagaaa tcactgggtc attcctccac aggggtccgc
     2221 gcttctgagg aggcttgact atgtgatgtt gtagagaata cttgacccac atcactgcca
     2281 ccttgagctg tggagtgtac ctacattttg taatggaaat agttgagaag tgtaggtcat
     2341 tcccataaga gcaaggctcc tagggagata tggtggtgca tacctataat cttattagca
     2401 tttggaaggt ggcagcaaga ggattagctt tctaaagcca gctttagcaa catagcaagt
     2461 tcaaggccag cctgggctac atgaaacctg tcttcaagca aacaaaaaaa gccaaagtcc
     2521 tttatgtccg ctcctgtcct ggataaagat tgccccaagg aaagcagatg ggccaggtgt
     2581 atccacaaac atccttaatc ctagcatctg gcagaggcag gaggatcact gtgtgtccca
     2641 ggctgaccag agctatacac aaggccccat gtctcaaaga ttgacaaaag gcagcagagc
     2701 ccaggttgta cctccgtctc ctgcacttcc tttctcttga atgatggtca ggagcgacat
     2761 ttgctgagcc aattctgtac gaatttatca aagctggtct ggaaggaagg ggagctccac
     2821 agtggcgtat cctcctacca gcaggagtca gcgtgggagg tgctgcttag gcccagcagc
     2881 cttccttcca ggaccatggt gccacagtgc gccgtggcgc tttcgctgtc catgcagcat
     2941 tacagcagcc tggccagcca gtagctcgcc ctgtgcaacg aatagtagaa ttctaaatgt
     3001 aagtagaaat ttctctactt ttaaaatagt agattcagat tacaggcatt cttactaagt
     3061 cattactgtg cagtgataga tgttttttac agtgagtttt actactaata ggatgtttta
     3121 aattagatag taaatttttg taatttaaaa ttttaactcc tttattctag ctattatgtc
     3181 tactagacta ttgcctcaga ggtacaggct gaagtgccca gtgaacactg agcaaggcag
     3241 caggctcact ctggttttca tgtagagtat taatgtagtg ctgaggcggc ccacagtttt
     3301 cagtagtact ttgtggggtg ctacaggtcc tggttagaga cacaatcact atcaaattac
     3361 agtggtaatt gccccttttt aatatggaga ttgtgttgaa tttgtgtaga cataattgta
     3421 ggcaaactaa cattcattaa aacctttgta aggggctgga gagatggctc agaggttaag
     3481 agcaccgact gctcttccag aggtcctgag ttcaattccc agcaaccaca tggtggctca
     3541 caaccatctg taatgccctc ttctggtgtg tctgaagaca ccataatcac ataaattaaa
     3601 aaagaaaaag aaaaaaaaac ctttgtaaag tttttatatc ttgatgaata taatgtgaat
     3661 ttaggcctat ttcctgtata gcaccttgat ttagttcatt cgtaaattgc tgttagctta
     3721 ttgttaattt gtggccacac aatacttctc acaagctttt aaaactccaa taaaaattat
     3781 ctatttttct actgttgtgg acagagagca gcacttactg agcaaagttg gatctgactc
     3841 caggagtcag atccctcaca ggccaaggcc tatgcctggt atgtgtttgc ttgcacgtgt
     3901 gtctagaagc catcggcgag ccctctgaag ccatccacct tttattttta agacaggtcc
     3961 tctcgctggc ctggaacatc caaagtagga tagataagct gacaggccaa ccaggctccg
     4021 agatcctcct gcctgccttc ctcgtgagat gtgctgtgga tacttggctt ttcacgtggg
     4081 tcctgggatc acactcaggc cctctggctg agccatctcc ccagcctcat gctggccggg
     4141 ttgtaaatgc aaagggtgag tgtgatgatg tctactgggc ctttgccatc gaaaaaatag
     4201 acactcaaat cttgtcttca ggattgagca tctgctagtt tttaatcttt tgttaaaaaa
     4261 aaagttgtaa gtcgtagagt cctttgtatc tgtaagctgt aataaattat tatatttgca
     4321 cattt
//
