LOCUS       XM_039098159            3393 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus autocrine motility factor receptor
            (Amfr), mRNA.
ACCESSION   XM_039098159
VERSION     XM_039098159.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 10, 2024 this sequence was replaced by
            NM_001427144.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3393
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3393
                     /gene="Amfr"
                     /note="autocrine motility factor receptor; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 124 ESTs, 13 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 243 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:361367"
                     /db_xref="RGD:1311551"
     CDS             62..1993
                     /gene="Amfr"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase AMFR"
                     /protein_id="XP_038954087.1"
                     /db_xref="GeneID:361367"
                     /db_xref="RGD:1311551"
                     /translation="MPLLFLERFPWPSLRTYTGLSGLALLGTIVSAYRALSQPEDGSG
                     EPEPLTAPLQPEALAPARLTPGGPRVRDVAQYLLSDSLFVWVLVNTACCVLMLVAKLI
                     QCIVFGPLRVSERQHLKDKFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAGLVFLHL
                     MVQLCKDRFEYLSFSPTTPMSSHGRVLSLLIAMLLSCCGLAVVCCVTGYTHGMHTLAF
                     MAAESLLVTVRTAHVILRYVIHLWDLNHEGTWEGKGTYVYYTDFVMELMLLSLDLMHH
                     IHMLLFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARFAVATAEEL
                     AVNNDDCAICWDSMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIADGSRARE
                     DHQGENLDENLVPVAAAEGRPRLNQHNHFFHFDGSRIASWLPSFSVEVMHTTNILGIT
                     QASNSQLNAMAHQIQEMFPQVPYHLVLQDLQMTRSVEITTDNILEGRIQVPFPVQRSD
                     SLRPALNSPVERPGTDLEEGEASVQTERVPLDLSPRLEETLDFSEVELEPVEVEDFEA
                     RGSRFSKSADERQRMLVQRKDDLLQQARKRFLNKSSEDDGASERLLPSEGTSSDPVTL
                     RRRMLAAAAERRLQRQQTT"
ORIGIN      
        1 cgccgcaggc gcctggccgc agcgcgggga gcctcgggcg ccggagcccg ccgccgccgc
       61 catgccgctg ctcttcctcg agcgcttccc gtggcccagc ctccgcactt acacgggcct
      121 cagcggcctg gccttgctgg gcaccatcgt cagcgcctac cgcgccctca gccagcccga
      181 ggacgggtcg ggcgagccgg agccgctaac ggccccactg cagcccgagg cgctcgcgcc
      241 ggcgcgcctg acccccggcg gcccccgggt ccgcgacgtg gcccagtacc tgctgtcgga
      301 cagcctgttc gtgtgggttc tggtgaatac tgcttgctgt gttttgatgt tggtggctaa
      361 gcttatccag tgtattgtgt ttggccctct tcgagtgagt gaaagacagc atctcaaaga
      421 caagttttgg aattttattt tctacaagtt cattttcatt tttggagtac tgaatgtcca
      481 gactgtggag gaggtggtga tgtggtgtct ctggtttgct ggacttgttt tcctgcatct
      541 gatggtccag ctctgcaaag accgctttga atacctttcc ttttctccca ccacaccgat
      601 gagcagccat gggagagtcc tgtccctgct gattgctatg ctgctctcct gctgtggact
      661 tgcagttgtc tgctgcgtca caggctacac ccatggcatg cacaccttgg ctttcatggc
      721 tgcagagtct cttcttgtga ctgtgaggac agctcatgtg attttaagat atgtaattca
      781 cctctgggac ctcaaccatg aagggacctg ggaaggaaag ggaacctatg tgtattacac
      841 cgattttgtc atggagctca tgctcctgtc cctggacctc atgcaccaca ttcacatgct
      901 gttatttggc aacatctggt tatctatggc tagcctggtc atctttatgc aacttcgcta
      961 cctgttccat gaggtacagc gcaggatccg ccgccacaag aactatctgc gagtggtagg
     1021 aaacatggaa gccaggtttg ccgttgccac tgcagaggaa ctagccgtca acaatgatga
     1081 ctgcgccatc tgctgggact ccatgcaggc tgcgaggaag ctgccctgtg gacatctttt
     1141 tcacaactcc tgccttcgtt catggctaga acaagacacc tcttgtccaa catgcagaat
     1201 gtctcttaac attgctgacg gcagccgtgc cagggaagac catcaaggag agaacctgga
     1261 cgagaacttg gttcctgtag cagctgcaga aggaaggcct cgcttgaacc agcacaatca
     1321 cttcttccac ttcgatgggt cccggattgc aagctggctg ccaagttttt cagtcgaagt
     1381 gatgcacact accaacattc ttggcatcac acaggcgagc aactctcagc taaatgctat
     1441 ggctcatcag attcaagaga tgttccctca agtcccatac caccttgtgc tccaggacct
     1501 ccagatgaca cgctccgtgg aaataacaac cgataacatc ttagaaggac ggattcaagt
     1561 acctttccct gtgcagcggt cagatagcct gaggcctgca ctgaacagcc cagtagaaag
     1621 gcccggcact gacctggagg agggagaagc atctgtccag acggagcgtg taccactgga
     1681 cctcagtcct cgcctagagg agaccttgga cttcagcgag gtagagctag agcccgtaga
     1741 ggtggaagac ttcgaagccc gtgggagccg cttctccaag tctgctgatg agagacagcg
     1801 catgttagtc cagcgtaagg atgacctcct gcagcaggct cgaaagcggt tcttgaacaa
     1861 aagttctgaa gatgatgggg cctcagagag actcctccct tctgaaggca cgtcctctga
     1921 ccccgtgacc ctgcgccgaa ggatgctggc agcggctgct gagcggaggc ttcagaggca
     1981 gcagacaacc tagtgcttcc tgaccttcct cagcctcctg cccggcccca gctcccggaa
     2041 gaggcctgtc ccagttctgc ctgctgtgtg gagacctgcg actgcatcgc tgctgcataa
     2101 agcatgtggt cctaatagtg tgtgcacagc tgacaaatcg aatcctttgt aatactttct
     2161 aatgtgacat ttctcttccc cttagaaaca ctgcacattt taactctagg catggtctct
     2221 tctggtgttg gctggacttg ttgggagtag gggacaagca gaaggaagtg ggcacttggg
     2281 cagtcacctg cctacagcag gtagcttgaa tttgttttga tataagccac agcagatgtt
     2341 gggtctttta gcaccatagc tggaaggaag catggatcct ggggagggtg catggcagca
     2401 gtcagaggtg cgagcaggaa gctgactaca ccacggctag gtgtcctgtt attaaatgct
     2461 gtgcgtgggg aggaagcatc ctgtgttcta gaggccagtc ccacaggctc ttggacctcc
     2521 agaccagcag ggcctcatgt agaaagaact ggtttagtat ctgcagtaga aagagtgagc
     2581 tcagggctgc agaatgagga ggcccttttc tgccctcaat atccaggacc aatctgagcc
     2641 gcagtccaca gctggcttca cacccgttca ctcgggtgca tcacttaagc tcgcccatgg
     2701 ccaccacctc tctccactcc ctgcttaatt caggcatggg aaggggttga gtaggaggct
     2761 ttggttatga ttttaattcc ttggtcaacc cagttaggct atgctaaaca taatgggttt
     2821 gatccttgga aaaagctgtg gccctgttag gcaggggtgt tttggaggac attgctgaag
     2881 aaataacttt tgtatctttc cctcccggag cccttcattc tcctgctttc gttcctgtgg
     2941 gtctcatcaa atagaagcag gacattgaat aatccacatg cctcaagcag tcttgttccc
     3001 agatctcaaa ttctccacgt atttaaggat ttgaaacatg caatcatagg ttacatagtt
     3061 ttatgtccca ttggattaag cttttttttt ttaatgtttc aaaacatagt tttatggtag
     3121 tccttttggg gaaaatccag tattatctaa aattattggc aaagttaaat gtattttaca
     3181 tacctgaaag tttttagaat gttgacaagt aactgagaaa aggataacag gcggataggc
     3241 gaagataatt tatttcaata aatctttcaa aagccttacc ttgaactgct gttagttaaa
     3301 tttctatggg tttttttgtt ttgtttttgt tttgctgaaa gcatagcaac ttgtttttat
     3361 tataaagcaa caataataaa aagcaaaatc ttg
//
