LOCUS       XM_039082653            5843 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ALS2 C-terminal like (Als2cl),
            transcript variant X11, mRNA.
ACCESSION   XM_039082653
VERSION     XM_039082653.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5843
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5843
                     /gene="Als2cl"
                     /note="ALS2 C-terminal like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 26
                     ESTs, 4 Proteins, and 97% coverage of the annotated
                     genomic feature by RNAseq alignments, including 36 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:316017"
                     /db_xref="RGD:1305208"
     CDS             1114..3972
                     /gene="Als2cl"
                     /codon_start=1
                     /product="ALS2 C-terminal-like protein isoform X1"
                     /protein_id="XP_038938581.1"
                     /db_xref="GeneID:316017"
                     /db_xref="RGD:1305208"
                     /translation="MCSSEETDLLRLEEVFSTTLARTISLILQPLLLADPEPSDPCGK
                     ECLRLLQQLHESAQRLWDVTEQSLLSLRQRLYHPPSMSLEAVLLLNNADYVLQAHMEY
                     IKSYTDCLVVQAFQKVSKKRSEFWRSQRKALRQLLSSGSSEGSVGTTLCQALRQPLAH
                     HVQKYVLLLLSLRDTLDEHHPAQQLVMHAVTLFGNLQSFMQQALDQAMATQALWHSLS
                     SRLRDVLCTPTHRLLQDSQDIPVVVTPLRAERVLLFDDTLVLLQGHNVHTFDLKLVWV
                     DPSQDKCVLHILTPEDEFSFCTRDPQGQVVWQWKVTQAVCQALCGKKDFPVLGSGREP
                     SVPPECRCLAYTFHREGRLYQATYDGEWSRAKPHGKGTLKWPDGRNHVGDFYQGLEHG
                     FGICLVPQASEDKFDCYKCHWREGRMCEYGICEYGTDEVYKGYFQAGVRHGFGVLDSA
                     PQAPQPFRYTGHWERGQRSGYGIEEDRDRGERYIGMWQADQRHGPGIVVTQAGVCYQG
                     TFQGDKMAGPGILLCEDDSLYEGTFTRELTLLGKGKVTFPNGFTLEGSFCSGTDKGLY
                     TQGVLDTTALPPNPSSTRKRQLGLGAFPVESRWQGVYSPFRDFLRLGCPGELQEALLG
                     FHVQSSRELRKSQEYLCCERSHPKDCVGSMEDILKELLQHRKPKALQQYLRKALSNSR
                     HPLGKLLQTLMLTFQATYSGIGANKHLQAMAQEEVKQHARELWAAYRGLLKVALLRQG
                     QTLEEESMETRDLQVHGLLLPLLLPSFYSELFTLYLLLHEREDGLYSRGIANLSLFPD
                     TKLLEFLDVQKHLWPLKDLRLTSNQRYSLVRDKCFLSATECLQKIITTVDPREKLEVL
                     EKTYGEIEATVSRVLGREYKLPMDDLLPLLIYVVSRARIQHLGAEIHLIRDMMDPIHT
                     GGLHDFLLTALESCYEHIQKEDMRLHHLPGHWDARELW"
ORIGIN      
        1 agaacctgta ataaatttac tttttttttt aaagtattta aaagaaagga agaaaggact
       61 ggaaggaagg agaggtcttg gccaagtggg gagggaagaa gaggctaggg gagggctctt
      121 gagactggag atcaagattg tggggtaggg gagtgaatgt gagccgcatc tgtgataggg
      181 ttacggggca acaaattcag agcctgtcgc cgtagggcag attggcccaa cttaaatgct
      241 caccaaaaag cgacctaagg gagccagggc tgttgaagtt ggcaggcccc ttctcagaga
      301 ctcttagaag tctctcttct ctctggcagg acgcatggag gccgtccaaa acttgggtaa
      361 ggggcaggtg gaccattctt gctctttcac agctgcctct tccccaggct tctctctgtg
      421 ctcagacttg gaagggttag aagcaattca gccaggctag tcagctccca gaggcctggt
      481 gccactgcag gcggaggggt gacttgcttc tggccaaacg ggagcccggc agctggacag
      541 caggcatctt tgttacaggt ttgaaccatc gtccctcctc cttccaagag tttggtttgg
      601 aactgcgctg ctctttccaa ggtcgaaggc tttggcacag gaaactggcc agattcaggc
      661 tgtacccgga atgaatgcag ggggcctctt tcaaggtcac acgcagcagt ggctgctacc
      721 gaagcgcccc cagtccaggg gttgcggggt catcatggcc gactgcctta aacaagtttc
      781 ccgaatctac ccagggctcc ttcgccggtg tgtaggggtg aaagggccgg gtgacccaat
      841 gggggtcggc aaggtctcag aggtacagcc tgctcagagt cggtgggtaa ggcactgcct
      901 gcggtctcgg atcgggagag ggaggtttgc cttgctgagt ctgacgtttg atctgcagtt
      961 acctcgttct gaaactctcc acgatcttca gggttgactg aggcaaagtc aagctcgtct
     1021 gctggccaat gaagatcaca gagtggaggc cttcagtgga aagatggcca gaacaaagac
     1081 cgactagtag gccgagcgtc tcacaccctg gctatgtgta gctctgagga gacagacctg
     1141 cttcggctgg aggaggtctt ctcaaccact cttgctcgaa ccatcagtct catcctgcag
     1201 cctctgctct tagctgaccc ggaaccctca gatccctgtg gcaaagagtg ccttcggctt
     1261 ctgcagcagc tgcatgagag tgcccagcgg ttgtgggatg tgacagagca gagcctgctt
     1321 tctctgaggc agaggctata tcacccacct tccatgagtc tggaggccgt cctgttactg
     1381 aacaatgctg actatgtcct acaggcccac atggagtaca tcaaatccta tactgactgc
     1441 ctggtggtgc aagcctttca gaaggtctcc aagaaaagga gtgagttctg gagaagtcag
     1501 cgcaaggccc tgcggcagct gctgtcctcc gggagctctg agggctccgt gggcaccacg
     1561 ctgtgccagg ccctccgcca gccactcgcc caccacgtgc agaaatacgt gctcctcctt
     1621 ctgagcctca gggacaccct tgacgagcac cacccagccc agcagctggt gatgcatgca
     1681 gttaccctgt ttggaaacct gcagtccttc atgcaacagg ccttggacca agccatggcc
     1741 acacaggccc tgtggcacag ccttagcagc cggctgaggg atgtgctctg taccccgact
     1801 caccgcctct tacaggacag ccaggacatc cctgtggtgg tcaccccact gcgggctgag
     1861 cgcgtgctgc tctttgatga tacccttgtc ctgctgcagg gccacaatgt ccacactttc
     1921 gacctgaagt tggtgtgggt ggaccccagc caagacaagt gtgtgctcca catcctcact
     1981 cctgaagacg agttctcctt ttgcaccaga gacccccaag gccaggttgt ctggcagtgg
     2041 aaggtgaccc aggctgtgtg ccaggcccta tgtggcaaga aggacttccc tgtgctggga
     2101 tcaggccggg agccatctgt acctcccgaa tgtcgctgcc tggcctatac tttccaccgt
     2161 gagggcaggc tctaccaggc tacctatgat ggcgagtgga gtcgagccaa gccccacggc
     2221 aagggaaccc tgaagtggcc agacgggcgg aaccacgttg gggatttcta ccagggcctg
     2281 gagcatggct ttggcatctg cctggtgccc caggcctctg aggacaagtt tgactgttac
     2341 aagtgtcact ggcgggaagg caggatgtgt gagtacggca tctgtgagta tggcactgac
     2401 gaggtgtaca agggctattt tcaggccggt gtgcggcatg gatttggcgt cctcgacagc
     2461 gccccgcagg ccccccagcc cttcaggtac acgggccact gggagagagg ccagaggagc
     2521 ggctacggca tcgaggagga cagggacagg ggtgagcgct acattggcat gtggcaggct
     2581 gaccagcgtc atggccccgg gatcgtggtc acccaggcag gcgtctgcta tcagggcaca
     2641 ttccaaggag acaagatggc tggcccaggc atcctgctgt gtgaggatga ttctctgtat
     2701 gaaggtactt tcacgaggga gctgacgctc ttaggaaagg gcaaggtcac cttccccaat
     2761 ggcttcacct tggagggttc tttctgcagt gggacagata aaggactgta cacacaggga
     2821 gtgctggaca caactgccct cccgcccaac ccaagcagta cacgcaagag acagctggga
     2881 ctgggtgcct tccctgtgga gagccgctgg cagggagtct acagcccctt ccgggacttc
     2941 ctgcgtttag gctgtcctgg ggaactgcag gaagccctcc tgggcttcca cgtgcagagc
     3001 tccagggagc tacgcaagtc ccaggagtac ctgtgttgtg agaggagcca ccccaaggac
     3061 tgtgtgggca gcatggaaga tatcctgaag gagctgctgc agcaccgaaa gcccaaggcc
     3121 ctgcagcagt acctcaggaa ggctctgagc aattcccgac accccctggg gaagttactc
     3181 caaaccctga tgctgacctt ccaggccacg tattcgggca taggggccaa caaacacctg
     3241 caggcaatgg cccaggagga ggtgaagcaa cacgcccggg agctttgggc tgcctacaga
     3301 ggtctgctga aggtcgcctt gctgcgccag ggccagaccc tggaagagga gagcatggag
     3361 acaagggacc ttcaggtgca cgggttgctg ttgcccctcc tcctacccag cttctactcg
     3421 gagctcttca cattgtatct gcttctccac gagagagagg acgggctgta cagccggggc
     3481 atcgccaacc tcagcctgtt ccccgacacc aagctcctgg agttcctgga tgtgcagaag
     3541 catctgtggc ccctcaagga cctcaggcta acaagcaatc agagatactc tctagtccgg
     3601 gacaagtgtt tcctgtcggc cactgaatgt ctgcagaaga tcatcaccac agtggaccct
     3661 cgggagaagc tggaggtgct tgagaagacc tatggggaaa ttgaggccac cgtgtcacgg
     3721 gtgctaggcc gggaatacaa actgcccatg gatgacctgt taccactgct tatctacgtg
     3781 gtgtcccgag ctcgaattca gcatctggga gctgagatcc acctgatccg agacatgatg
     3841 gaccccatcc acacaggtgg cctccatgac ttcctgctta cagctttaga gtcctgttat
     3901 gagcacatcc agaaggaaga catgaggctg caccacctgc ctggccactg ggacgcaaga
     3961 gaactctggt gacatggcca ctgtggacca agtgcggtgc taggggccac atgcccgccg
     4021 tggactttgg tgaaacaagc gctgaacacc tgctcctgaa cacctgctcc tgaacacctg
     4081 ctcctgaaca cctgctccta aacacctgct cctgaacacc tgctcctgaa cacctgctcc
     4141 tgaacacctg ctcctcactg ccttgatgga ggcaggctgt agcgatggtt ctcaaaggag
     4201 atggtgttct gcttcctacg gggacacacc tagctgcctc agtgtgaccc cagagttcat
     4261 ggctctcctt tggcctctgg tctgggctct ggtaaccctt ttcccagact tagcaccatc
     4321 tcaggtgagg agccctggct ccgcttgacc tcagccctta ctctgcagtc atcactctcg
     4381 gggctgcatg atggtctcca ccgctcttcc agtccagttc acggcagccc ttccccgaga
     4441 tctggcttcg ttcagctctt tggactgaaa tggtcccaaa ctgcagaagg ctctgtttgc
     4501 tcagttctct ttcccgcaag ggaacctgtt tcctcctcct cgactgggat tcaggcttaa
     4561 gccagtctct cagtagggcc tgtggcagaa acacctcagg tccatgccaa gctgcctcag
     4621 ttgcctcagg caggctttgc aaaggcaagg ggcgtaaaca ccagcagcca ttcacctggc
     4681 ctagcttgcc agcagacata cctgaaacac tttctgacct ctctgtggga gagacagcca
     4741 gcatatccag agcttgctac caccctgact gacaaacatc tctggctggg gaccgtgagt
     4801 aagtctggtt ccagtcctga gctctgggtc actgttcctg ggtatgcctc ccaccaattc
     4861 agcctgtgaa ggactgaaag agatgctgag aaaagtacac acttaataag gttgtgacag
     4921 gcctgtggga acctcaggga ggggcacctc cagaggccct cagaaatcgt gaagccatgt
     4981 atgaagagag ctggtgattc tcctgcaccg tcaaacctta gaaaagcaaa aaaaggcttt
     5041 ctctggctgg gtccaccaaa tattttatca caaatatagg acctgaactc gagttctacc
     5101 agaaacccat gtcccaagaa gatccttaga agggttaaac tgaccaaggc tcctccctca
     5161 aagacagccc taagtgcctg tgacacagtt cagctgtgac aaaaccctgc cacccacctt
     5221 cctgccccca acactaactg aacttgggcc tctggtcttt gtgagtccac agggtttcca
     5281 gaatgccctg gtgggttcca gaagcagcca tggctgtagc agacccctcg gacacatgac
     5341 gggcatgcag gaaggaagct gactgacagc agaagagagt accagtcagc catctgcatt
     5401 tggaggcaga cgggatgggc tcacctacag tcagtgcaag gccatcttct gtagatgtct
     5461 agcctggaac atctcctgat tttcgacatg tgagccatgc aagagggcag tctgaggagt
     5521 tcatggctgt tatcatcaat tcccctaact gcctagatcc agtaggtatg gccaagaaat
     5581 aagagaatca gcaggccaga tgtcactcca ccccacttcc aggcttccca gaaggtggac
     5641 ctggagtcag gaggcaagac tgagctgaga gacggctagt ctcatacagc tttgctgggc
     5701 cttttcactc ccccctcctg cctcatgatg ttttttctct ctctccttct ctgggggatg
     5761 gccacaacta cagtctacat atttattcag catttttaat aaacccattt catctttatg
     5821 tgggtgcatg tgtgcacatg tga
//
