LOCUS       XP_038953341            2126 aa            linear   ROD 11-JUN-2023
DEFINITION  LOW QUALITY PROTEIN: alpha-protein kinase 2 [Rattus norvegicus].
ACCESSION   XP_038953341
VERSION     XP_038953341.1
DBLINK      BioProject: PRJNA677964
DBSOURCE    REFSEQ: accession XM_039097413.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XP_038953341.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 17 indels
            internal stop codons :: corrected 2 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Rattus norvegicus"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     Protein         1..2126
                     /product="LOW QUALITY PROTEIN: alpha-protein kinase 2"
                     /calculated_mol_wt=229805
     CDS             1..2126
                     /gene="Alpk2"
                     /coded_by="XM_039097413.1:383..6763"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 8 bases in 6 codons;
                     deleted 15 bases in 11 codons; substituted 2 bases at 2
                     genomic stop codons"
                     /db_xref="GeneID:498875"
                     /db_xref="RGD:1564431"
ORIGIN      
        1 madpgcpqrh tlrflstlls qkvpeksdvv lrcmiagqpk pevtwykngq aidsgntvss
       61 yeffenqyih llhlpgcaqs daavyqvsar scvgmiccsa slevqclqdp qvspdpgggg
      121 dvageretei reedstrrtd ekwnpcktee smaagaympt hsspdkfdps cspqmvvshd
      181 savsdsenpq yvkearqrte pfnsdnmqas sfnsniekqd vsqlrtahat vsgltgdglg
      241 heepnesvtp shqtpkaqky isfslplpea tlypypsdsn sinmqpgpqv psedsdsdye
      301 lcpeitltyt eefsdddley lecsdvmtdy snavwqrnlq gtdrvflles ddeemefnec
      361 gpggcehffs emgcgpqvsg gmwsmnvatg fcsyrsqpqe vgdrssgtsr hsplplhsem
      421 tltlgphqdg iatmtepgra plptaseave ndcsgirget rdkpeageef ssdnlqtmdk
      481 aeteasakpl sggsdkseak qglkslager teekypgsrk talrptrarw pgmkanvkkq
      541 llkdgppkgt ldplpkeptk qpltrsygqe pahtetgapg wnshfrevci plpaeqdskt
      601 prppadplsk egdssfeggg allstlseas qipdqtagrl qetigensyl dqmpafsvpa
      661 eeestftgvq thfvsnltei drgnsslaqy lglescpqsp qqesrqnreg drpgalwaes
      721 aqelrpledn deevsqapas valpqgdgth fresealsda fsqptapslp lenvdsgsrg
      781 reaacvmgcf eagdqetcya tmdlpvgapv dkylpeeicp mdleltegqr evcdlcspdk
      841 ilavlqaqgs espqatykhs edgksaegal fivtvawtts pearedatgg taadtgnsps
      901 ifsstllynv ggfgeiqapc senyllcksn eggygssnls vpiaidtlas ygsirecsee
      961 qstepaanvd chqvtreteg iltdatevhk nkcrtvsvph indfvvgadq vsceaqdeen
     1021 spslpddpls xasqvkatre tlvpapsdag thghfllpeg qglylrplqi dtqpgyesqt
     1081 vegahsggle edfqekgngt kqcirpqsts hqgslsandf qeslpsipam qqevnvepfe
     1141 hspadsgeet ecssdqrtsv svlaektmge gsplvssvpa lpdillgekd giglgswsvg
     1201 skvkiitlea pvfeiwppel vthsgykeae vgltapgrsw alsdilragt rpepgalgvt
     1261 twvpspkada imalgnnrdn lrdaapdrqa ycnvrtsqcl gqprllessv dpveekelnv
     1321 tdspsetsxt gevvemaett deeqggrqhk lphptvanqs vnfpriless vdpiddrggk
     1381 pepsdsniea sesttgnmcq rvdiqtahlr vphpqdngei ipnenttnqt hvdreradak
     1441 asqhnaakda iwqgqcpgee xqgipsvctv sptqdgwxqk preagqrgkd etevtspmsp
     1501 lsncpagmty tsvtaetsns tghiyggsep rtpstvipvk rekgtienkc gkhvpssndl
     1561 mdtlctsspk gnvtrsptsp raeelkseel qiaetkplns sxppnndlgf isgehesekd
     1621 peslllkdlc qkgstlesgx ksreeqqrpv vaniskapga qsaiagseeg kkqeasgxgh
     1681 laagikkkil srvaalrlrl eekervrxns tlrkapkfer slsrtdekrd prrapckaeg
     1741 kapvllkkiq aepapehsgn imltcqfsei hedstvcwtk dsksiaqlkk sagdsssvsl
     1801 aiaqagqkdq glyyccvkns ygkvtaefnl taevlkqlss hteyrgceei efsqlifked
     1861 vfndsyfgdh lrgqifteel hfgegvhrka frstvmqglm pvfqpghacv lkvhnavahg
     1921 trnndelvqr nyklaaqecy vqntaryyak iyaaeaqple gfgevpeiip iflirrpenn
     1981 ipyatveeel igefvkysir dgkeinflrr dseagqkcct fqhwvyqkts gcllvtdmqg
     2041 vgmkltdvgi atlakgykgf kgncsmtfid qfralhqcnk yckmlglksl qnnsqkpkki
     2101 lgkgrapsns spvkapesgt ptekkt
//
