LOCUS       NM_001013037            1499 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus allantoicase (Allc), mRNA.
ACCESSION   NM_001013037 XM_216673
VERSION     NM_001013037.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1499)
  AUTHORS   Vigetti,D., Binelli,G., Monetti,C., Prati,M., Bernardini,G. and
            Gornati,R.
  TITLE     Selective pressure on the allantoicase gene during vertebrate
            evolution
  JOURNAL   J Mol Evol 57 (6), 650-658 (2003)
   PUBMED   14745534
REFERENCE   2  (bases 1 to 1499)
  AUTHORS   Vigetti,D., Monetti,C., Prati,M., Gornati,R. and Bernardini,G.
  TITLE     Genomic organization and chromosome localization of the murine and
            human allantoicase gene
  JOURNAL   Gene 289 (1-2), 13-17 (2002)
   PUBMED   12036579
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC078971.1.
            
            On Apr 20, 2005 this sequence version replaced XM_216673.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC078971.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1499
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q16"
     gene            1..1499
                     /gene="Allc"
                     /note="allantoicase"
                     /db_xref="GeneID:246758"
                     /db_xref="RGD:621804"
     exon            1..35
                     /gene="Allc"
                     /inference="alignment:Splign:2.1.0"
     exon            36..243
                     /gene="Allc"
                     /inference="alignment:Splign:2.1.0"
     CDS             154..1395
                     /gene="Allc"
                     /EC_number="3.5.3.4"
                     /note="probable allantoicase; allantoate amidinohydrolase"
                     /codon_start=1
                     /product="probable inactive allantoicase"
                     /protein_id="NP_001013055.1"
                     /db_xref="GeneID:246758"
                     /db_xref="RGD:621804"
                     /translation="MADTPKEGKLTRFLDFTQLIDLASECVGGKVLFATDDFFGPAEN
                     LIKSNNPSFKENEYTEFGKWVDGWETRRKRIPGHDWCVIQLGIQGIIRGIDVDISYFS
                     GNYAPRMSIQAANLSEDTVTNIPPRGVKMGAAATSEEFVAITELKSHSWDYLVPMSEL
                     KPGDPDSSHNYFFVNSQQRWTHIRLNIFPDGGVARLRVYGTGQRDWAALDSTEPVDLV
                     AIAFGGVCVGFSNAHFGHPNNMIGVGDPKSIADGWETARRLDRPPVLEGNENGFLQVP
                     GCEWAVFRLAHPGVITQIEIDTKYFKGNSPDSCKVDGCILTTLEEEDMIRQKWSLPAH
                     KWKPLLPVTKLTPNQNHLLDSLTLELQDVITHARITIAPDGGVSRLRLKGFPSSICLL
                     RPLREKPMLRFSLKAGFRANL"
     exon            244..294
                     /gene="Allc"
                     /inference="alignment:Splign:2.1.0"
     exon            295..382
                     /gene="Allc"
                     /inference="alignment:Splign:2.1.0"
     exon            383..508
                     /gene="Allc"
                     /inference="alignment:Splign:2.1.0"
     exon            509..588
                     /gene="Allc"
                     /inference="alignment:Splign:2.1.0"
     exon            589..721
                     /gene="Allc"
                     /inference="alignment:Splign:2.1.0"
     exon            722..877
                     /gene="Allc"
                     /inference="alignment:Splign:2.1.0"
     exon            878..951
                     /gene="Allc"
                     /inference="alignment:Splign:2.1.0"
     exon            952..1060
                     /gene="Allc"
                     /inference="alignment:Splign:2.1.0"
     exon            1061..1185
                     /gene="Allc"
                     /inference="alignment:Splign:2.1.0"
     exon            1186..1474
                     /gene="Allc"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaattcaat cctaaacact gggatctgga ctcgggtgaa gaacagtcca gcccttggtt
       61 gcctcacctc caaaggcttc caggcatggt ttttgagacc tcctcacttc tgaagctttc
      121 tggctgggcc tgcccttctc aactctagga agcatggctg atactccaaa ggagggaaag
      181 ctgaccagat ttctggactt tacccagctg attgatttgg cctctgagtg cgtgggagga
      241 aaggttttgt ttgcaacaga tgactttttt ggtcctgcag aaaatctcat aaagagcaac
      301 aatccgagtt ttaaggaaaa tgaatacact gagtttggga aatgggtgga cggatgggag
      361 accaggcgca aaagaattcc aggtcacgac tggtgtgtga tccaactggg aatacagggc
      421 attatccgtg gtatcgatgt ggatatttct tacttctcag ggaactatgc tcctcgaatg
      481 tcaattcaag cagcaaactt gagtgaagat acagtgacaa acattccacc aagaggagtt
      541 aagatggggg ctgcagcgac gtctgaggaa tttgtagcca ttactgagct gaaatcacac
      601 tcctgggatt acctggttcc catgtcggag cttaagccag gggaccctga ctccagccac
      661 aactattttt ttgttaattc ccagcagaga tggactcata taagactcaa catattccca
      721 gatggtggcg ttgcacgcct tcgagtatac ggtactggac agagagactg ggctgcactg
      781 gattccacgg aacctgtaga cctggtggcc attgctttcg ggggtgtctg tgtaggattt
      841 agtaatgcac actttggaca tccaaataat atgataggtg ttggcgatcc taagtccata
      901 gcagatggtt gggaaacagc gagaagactg gaccgacccc cagtgttaga aggtaacgag
      961 aatggctttc tccaggtccc aggttgtgag tgggcagtgt tccgattggc acatcctgga
     1021 gtcatcactc aaattgaaat tgatacaaag tactttaaag gtaattctcc tgacagctgc
     1081 aaagtggatg ggtgcatcct gaccaccctg gaagaggaag acatgatccg gcagaagtgg
     1141 agtcttcccg cccataagtg gaagccattg cttccagtca ccaagctaac tcctaaccaa
     1201 aatcacttgt tggacagcct gaccctggag cttcaggatg tcatcactca tgccaggatt
     1261 accattgccc ctgatggcgg tgtgagccgc cttcggctca agggcttccc cagttccata
     1321 tgtttgctgc ggcccctgag ggagaaaccc atgctgagat tctctcttaa agcgggcttc
     1381 agggcgaatc tctaaagagc tcatccattg tagtacacac ccactgcctt tagtattccg
     1441 aacacctggt ggttccaata aaatgatcac cccaaaaaaa aaaaaaaaaa aaaaaaaaa
//
