LOCUS       NM_001302143             569 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ALK and LTK ligand 1 (Alkal1), mRNA.
ACCESSION   NM_001302143 XM_006225181 XM_006237796
VERSION     NM_001302143.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Guan,J., Umapathy,G., Yamazaki,Y., Wolfstetter,G., Mendoza,P.,
            Pfeifer,K., Mohammed,A., Hugosson,F., Zhang,H., Hsu,A.W.,
            Halenbeck,R., Hallberg,B. and Palmer,R.H.
  TITLE     FAM150A and FAM150B are activating ligands for anaplastic lymphoma
            kinase
  JOURNAL   Elife 4, e09811 (2015)
   PUBMED   26418745
  REMARK    Publication Status: Online-Only
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000005.1.
            
            On or before Oct 2, 2014 this sequence version replaced
            XM_006237796.2, XM_006225181.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR21887622.3694739.1,
                                           SRR21887622.3694736.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16093042, SAMN16093043
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-184               JAXUCZ010000005.1  17836606-17836789   c
            185-238             JAXUCZ010000005.1  17811164-17811217   c
            239-319             JAXUCZ010000005.1  17808509-17808589   c
            320-396             JAXUCZ010000005.1  17807011-17807087   c
            397-569             JAXUCZ010000005.1  17806601-17806773   c
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q12"
     gene            1..569
                     /gene="Alkal1"
                     /gene_synonym="Fam150a"
                     /note="ALK and LTK ligand 1"
                     /db_xref="GeneID:100910984"
                     /db_xref="RGD:1583530"
     CDS             1..384
                     /gene="Alkal1"
                     /gene_synonym="Fam150a"
                     /note="protein FAM150A-like; family with sequence
                     similarity 150, member A"
                     /codon_start=1
                     /product="ALK and LTK ligand 1 precursor"
                     /protein_id="NP_001289072.1"
                     /db_xref="GeneID:100910984"
                     /db_xref="RGD:1583530"
                     /translation="MWLAKLSTRVLLLLLLALALSPPGTQGRPRGRRAARVTELLPQL
                     FLPVTGTRLAPRTSRSTEIFPRDLTLKDKFIKHFTGPVTFSAECSKHFHRLYHNTRDC
                     SMPAYYKRCARLLTRLAVSPLCSQT"
     exon            1..184
                     /gene="Alkal1"
                     /gene_synonym="Fam150a"
                     /inference="alignment:Splign:2.1.0"
     exon            185..238
                     /gene="Alkal1"
                     /gene_synonym="Fam150a"
                     /inference="alignment:Splign:2.1.0"
     exon            239..319
                     /gene="Alkal1"
                     /gene_synonym="Fam150a"
                     /inference="alignment:Splign:2.1.0"
     exon            320..396
                     /gene="Alkal1"
                     /gene_synonym="Fam150a"
                     /inference="alignment:Splign:2.1.0"
     exon            397..569
                     /gene="Alkal1"
                     /gene_synonym="Fam150a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgtggctgg ctaagctcag cacccgggtg ctcctactgt tgctgctggc tttggctttg
       61 tccccacccg ggactcaggg gcggccccgg ggacgcaggg cggcgcgtgt cactgagctc
      121 ttgccacagc ttttcctccc tgtgacaggg actcgcctgg ctcccagaac ctcccggagc
      181 acagaaatat ttccaagaga cctgaccttg aaagacaaat tcataaagca tttcacagga
      241 cctgtcacat tttcagctga atgcagcaaa cacttccatc gactttatca caataccaga
      301 gattgctcga tgccagctta ttataaaaga tgtgctagat tgctgacgag attagctgtg
      361 agtccactgt gctcccagac ctaggaaact tgtgctacat ttcataagat gcaaatataa
      421 tttgaagaaa aagtacctgg aatcatattt aatgtaaaaa gtggacacgt ttagttttct
      481 acgaaccgtc atgaagtaac ttcccaggag taacctatga gtggcgtcct gcaggaggaa
      541 gaaagctttc ctgattctgg acacaaaaa
//
