LOCUS       NM_001394348            2588 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus ALG9, alpha-1,2-mannosyltransferase (Alg9),
            transcript variant 1, mRNA.
ACCESSION   NM_001394348 XM_039081862
VERSION     NM_001394348.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2588)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   2  (bases 1 to 2588)
  AUTHORS   Girard,A., Sachidanandam,R., Hannon,G.J. and Carmell,M.A.
  TITLE     A germline-specific class of small RNAs binds mammalian Piwi
            proteins
  JOURNAL   Nature 442 (7099), 199-202 (2006)
   PUBMED   16751776
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Apr 15, 2021 this sequence version replaced XM_039081862.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.1094382.1,
                                           SRR22399484.1556768.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-235               JAXUCZ010000008.1  60015752-60015986
            236-371             JAXUCZ010000008.1  60016841-60016976
            372-506             JAXUCZ010000008.1  60019295-60019429
            507-577             JAXUCZ010000008.1  60024062-60024132
            578-666             JAXUCZ010000008.1  60027688-60027776
            667-802             JAXUCZ010000008.1  60029014-60029149
            803-890             JAXUCZ010000008.1  60031258-60031345
            891-996             JAXUCZ010000008.1  60031500-60031605
            997-1119            JAXUCZ010000008.1  60038358-60038480
            1120-1274           JAXUCZ010000008.1  60040337-60040491
            1275-1404           JAXUCZ010000008.1  60044324-60044453
            1405-1552           JAXUCZ010000008.1  60046468-60046615
            1553-1682           JAXUCZ010000008.1  60047837-60047966
            1683-1813           JAXUCZ010000008.1  60062105-60062235
            1814-2588           JAXUCZ010000008.1  60077736-60078510
FEATURES             Location/Qualifiers
     source          1..2588
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q23"
     gene            1..2588
                     /gene="Alg9"
                     /gene_synonym="Dibd1"
                     /note="ALG9, alpha-1,2-mannosyltransferase"
                     /db_xref="GeneID:367083"
                     /db_xref="RGD:1311272"
     exon            1..235
                     /gene="Alg9"
                     /gene_synonym="Dibd1"
                     /inference="alignment:Splign:2.1.0"
     CDS             78..1937
                     /gene="Alg9"
                     /gene_synonym="Dibd1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     disrupted in bipolar affective disorder 1;
                     asparagine-linked glycosylation 9 homolog (S. cerevisiae,
                     alpha- 1,2-mannosyltransferase); asparagine-linked
                     glycosylation 9 protein; alpha-1,2-mannosyltransferase
                     ALG9; asparagine-linked glycosylation 9 homolog (yeast,
                     alpha 1,2 mannosyltransferase); asparagine-linked
                     glycosylation 9, alpha-1,2-mannosyltransferase homolog"
                     /codon_start=1
                     /product="alpha-1,2-mannosyltransferase ALG9 isoform 1"
                     /protein_id="NP_001381277.1"
                     /db_xref="GeneID:367083"
                     /db_xref="RGD:1311272"
                     /translation="MASRRARQRLKGGGGGGGGSGGGSGSGGDAGPAAEKLRELLGSR
                     EAGVEPRPESGNKAGQVWAPEGSTAFKCLLSARLCAALLSNISDCDETFNYWEPTHYL
                     IYGKGFQTWEYSPVYAIRSYAYLLLHAWPAAFHARILQTNKILVFYFLRCLLAFVSCV
                     CELYFYKAVCKKFGLHVSRMMLAFLVLSTGMFCSSSAFLPSSFCMYTTLVAMTGWYMD
                     KTPIAVLGVAAGAILGWPFSAALGLPIAFDLLAMKHRWKSFFLWSLAALVLFLVPVVV
                     IDSYYYGKLVIAPLNIVLYNVFTSHGPDLYGTEPWYFYLINGFLNFNVAFALALLVLP
                     LTFLMEYLLQRFHVQNLGHPYWLTLAPMYIWFMIFFIQPHKEERFLFPVYPLICLCGA
                     VALSALQKCYHFVFQRYRLEHYTVTSSWLALGTVFLFGLLSFSRSVALFRGYHGPLDL
                     YPEFYRIATDPTIHTVPEGRPVNVCVGKEWYRFPSSFLLPDNWQLQFIPSEFRGQLPK
                     PFAEGPLATRIVPAHMNDQNREEPSRYIDISKCHYLVDVDTMRETPREPNYSSNREEW
                     VSLAHRPFLDASRSSKLLRAFYIPFLSDQYTVYVNYTILKPRKAKQSRKKSGG"
     exon            236..371
                     /gene="Alg9"
                     /gene_synonym="Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            372..506
                     /gene="Alg9"
                     /gene_synonym="Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            507..577
                     /gene="Alg9"
                     /gene_synonym="Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            578..666
                     /gene="Alg9"
                     /gene_synonym="Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            667..802
                     /gene="Alg9"
                     /gene_synonym="Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            803..890
                     /gene="Alg9"
                     /gene_synonym="Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            891..996
                     /gene="Alg9"
                     /gene_synonym="Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            997..1119
                     /gene="Alg9"
                     /gene_synonym="Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1120..1274
                     /gene="Alg9"
                     /gene_synonym="Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1275..1404
                     /gene="Alg9"
                     /gene_synonym="Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1405..1552
                     /gene="Alg9"
                     /gene_synonym="Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1553..1682
                     /gene="Alg9"
                     /gene_synonym="Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1683..1813
                     /gene="Alg9"
                     /gene_synonym="Dibd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1814..2588
                     /gene="Alg9"
                     /gene_synonym="Dibd1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtttcccagc caagcaatgt ctgcgccttc actgatttcg tagcgtgcag agttctatcc
       61 tttccccggt actaggcatg gcgagccgaa gggcccggca gcgcctcaag ggcggcggtg
      121 gcggcggcgg cggcagtggc ggcggtagcg gcagcggcgg ggacgcgggc ccagccgcgg
      181 agaagctacg ggagttactg ggcagccgag aggcaggcgt ggagccgcgg ccagagtctg
      241 gaaataaagc agggcaagtc tgggcccccg aaggatccac tgctttcaag tgtctgctct
      301 ctgcaaggtt gtgcgctgcc cttctgagca acatctcaga ctgtgatgaa acattcaact
      361 actgggaacc aacacactac ctcatctacg ggaaggggtt tcagacgtgg gaatattccc
      421 ccgtgtatgc catccgctcc tacgcttacc tgttgctgca tgcctggcca gctgcatttc
      481 atgcacggat tctgcaaact aacaagattc ttgtattcta ctttttgaga tgtctcctgg
      541 cttttgtgag ctgtgtttgt gaactttact tttataaggc tgtgtgcaag aagtttgggc
      601 tgcatgtgag ccggatgatg ctggccttcc tggtgctcag cacaggcatg ttctgctcat
      661 cgtctgcatt ccttcctagc agcttctgca tgtacaccac gttggttgct atgacaggat
      721 ggtatatgga caagacaccc attgctgtgc tgggagtagc agctggagca atcctcggct
      781 ggccgttcag tgcagctctc ggtttaccca tcgcctttga cttgctggcc atgaagcaca
      841 ggtggaagag tttcttcctc tggtccctgg cggccctggt tctcttcctg gtgcccgtgg
      901 tggtcattga cagttattat tatgggaagt tggtgattgc ccctctcaac attgttttgt
      961 acaatgtctt tacttctcat ggacctgatc tttatggtac agaaccatgg tatttctatt
     1021 taatcaatgg atttctgaat ttcaatgttg cctttgcttt ggctcttctg gtcttgccac
     1081 tgacttttct tatggagtac ctgctgcaga gattccatgt tcagaattta ggacacccat
     1141 attggctgac cttggcgccg atgtacattt ggtttatgat tttcttcatc cagcctcaca
     1201 aagaggagcg gtttcttttc cccgtctatc cacttatatg tctctgtggc gctgttgccc
     1261 tctctgcact gcagaaatgc tatcactttg tgtttcaacg ataccgcctg gagcattata
     1321 ccgtgacgtc cagctggctg gcactgggga cagttttcct gtttgggctc ttgtcgttct
     1381 cccgctctgt ggctctgttc agaggatatc atgggcccct tgatttatat ccagaatttt
     1441 acagaattgc cacagaccca accatccaca ctgtcccaga aggcaggcct gtgaacgttt
     1501 gtgtgggaaa agaatggtat cgatttccca gtagctttct tctgcctgac aattggcagc
     1561 ttcagttcat tccatcagag ttcagaggtc agctaccaaa gcctttcgca gagggaccac
     1621 tggccactag gattgttccc gctcacatga atgaccagaa ccgagaggag ccttccagat
     1681 atattgacat cagcaaatgc cattacttag tggacgtgga taccatgaga gaaacgcctc
     1741 gggagccaaa ctactcatcc aacagagaag aatgggtgag cctggcccac aggccgttcc
     1801 tggatgcatc taggtcttcc aagttgcttc gggcattcta cattcccttc ctgtcagatc
     1861 aatacacagt gtatgtgaac tacaccatcc tgaagcctcg gaaagcaaag caaagccgga
     1921 agaaaagtgg aggttagcac acccctgtgg ctccagtgga cagcctgtgt taactagggg
     1981 ctccactgag ctgacttcct ccaaggcatc atatgctgta ataaaggtcg tctgccaaga
     2041 atgccagatc tccggtgctc tgagctcgtc atggtgtatc tcaaagtcta atcaaagtca
     2101 tgcacttcct gctcctgtgt ctcttctgca tgtgagcttt ctgcagatag gcacagtcct
     2161 aactcctggg gaggtacact gccccactgc tccttgttct ccgagtagtt ctttactaga
     2221 gcggagaaga gcagaatgtg ctcacgggaa gagctgagaa tccttgactc ggtgtgtgct
     2281 agccttttcc acttgctggc ttgggttctg agaactccca agccttcctt aggctacgtg
     2341 gtttccctac caaagctgtt tggcaaatgc cagtgctgaa aagaagctca gcctcattgc
     2401 cagccggatg tcctttaccc gccagcaaga cacagcttct aaagcgtcca caggactaac
     2461 accctgtccc gaagctcagg aaaaaggcga ccactgaaga actgtgacct aatcatatta
     2521 tttatgatgc ctctgatttt ccttttattt tctttaaaac tggtcttaat tatatggctt
     2581 tttgggaa
//
