LOCUS       XM_017594876            2175 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ALG12, alpha-1,6-mannosyltransferase
            (Alg12), transcript variant X1, mRNA.
ACCESSION   XM_017594876
VERSION     XM_017594876.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017594876.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017594876.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2175
                     /gene="Alg12"
                     /note="ALG12, alpha-1,6-mannosyltransferase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 26 ESTs, 3 long SRA reads, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 60 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:315212"
                     /db_xref="RGD:1304826"
     CDS             182..1648
                     /gene="Alg12"
                     /codon_start=1
                     /product="dol-P-Man:Man(7)GlcNAc(2)-PP-Dol
                     alpha-1,6-mannosyltransferase isoform X1"
                     /protein_id="XP_017450365.1"
                     /db_xref="GeneID:315212"
                     /db_xref="RGD:1304826"
                     /translation="MAGKKSSGRQSLLPLGLLVTVAAIHLVACPYTKVEESFNLQATH
                     DLLYHQLDIDKYDHHEFPGVVPRTFLGPLLIAAFSSPVVYVLSLLEVSRFYSQLIVRG
                     VLGLGVIFGLWTLQKAVRQQFGATVAVMFCWISATQFHLMFYCTRTLPNVLALAVVLP
                     ALTAWLQHRWAVFVWLSAFVIIGFRAELAMLLGIMLLLTLYQRRMSVARLLQHAIPAG
                     ILCLGLTVAVDSYFWRYLVWPEGVVLWYNTVLNKSSNWGTSPLLWYFYSALPRGLGCS
                     LLFIPLGAVDRRTFALALPSLGFVALYSLLPHKELRFIIYTFPVLNIMAARGCTYVLN
                     KKSWPYKVRALLVFGHVVVNVASTATSLYVSHFNYPGGVAMQRLHELVPPQTDVLVHI
                     DVAAAQTGVSRFLQVNDDWRYDKREDVQLGAAGMLDYTHIIMEAVPGHLALYRDTHRV
                     LARIEATTGVSLNLMKVPPFDVSLQTKLVLLERLLRPA"
ORIGIN      
        1 ttcttgcccc gccctccacg agtggcctgc ggcggccatc ttttctccgg gcgggaagtg
       61 cccgcctctg tggccagctt gagcaatggt ggccatgtta agttcgggca aagatttggc
      121 ttcttggcct ggcttccgcg gccggcttcc tgcggaaggt gcatgaagtt taaagctctt
      181 catggctggc aagaaatcat caggcaggca gtcactgctg cctctggggc tgttggtcac
      241 tgtagctgcc atccaccttg ttgcctgtcc gtacaccaag gtagaagaga gcttcaacct
      301 gcaggctacg catgaccttc tgtatcacca gctggacata gacaagtatg accaccatga
      361 gtttcctgga gtcgttccca ggacattcct ggggccgctg ttgattgccg cgttctccag
      421 ccctgtggtt tatgtgcttt cactgttgga agtctccaga ttttattctc agctgatagt
      481 cagaggcgtc cttggacttg gtgtgatttt tggactctgg acattacaga aggcagtaag
      541 acagcagttc ggggctacgg tggctgtcat gttctgctgg atatcagcca cacagtttca
      601 tctcatgttc tactgtacga ggacgcttcc caacgtgttg gccctggctg tggttttacc
      661 ggccctcaca gcctggctgc agcacagatg ggccgtcttt gtctggctct ccgcctttgt
      721 catcattggc ttcagggctg agctggctat gctgctgggc atcatgctgc tgctgacctt
      781 gtaccaaagg aggatgtctg tggccagatt gctccagcac gccatcccag cagggattct
      841 ttgcctaggg ctgacggttg ctgtggactc ctatttctgg cgataccttg tgtggccaga
      901 aggagtggtg ctttggtaca acactgtcct gaacaaaagt tccaactggg gtacctcccc
      961 actcctgtgg tatttctact cagccctgcc ccgaggcctg ggctgcagcc ttctcttcat
     1021 acccctgggt gcagtggaca ggagaacctt tgcgttggct ctgccaagcc ttggattcgt
     1081 ggctttatac tcgctcctcc cacacaagga actgcggttc atcatctata ccttccctgt
     1141 actcaacatc atggctgcca gaggctgcac ctatgtcctg aataaaaagt cttggccgta
     1201 caaggtgaga gctctgctgg tgtttggaca tgtcgtggta aatgtggcgt ctacagccac
     1261 atccctctat gtgtcccatt tcaactaccc tggtggggtt gcgatgcagc ggctacatga
     1321 actggtgcca cctcagacag atgtccttgt acacatcgat gtggctgctg cccagacagg
     1381 cgtgtcacgg tttctacagg tcaacgatga ctggaggtat gacaagaggg aagatgtgca
     1441 gctgggagca gcgggcatgc tggactacac ccacatcatc atggaggcag tgcctgggca
     1501 cctggccctc tacagggaca cgcaccgagt cctagcccgg attgaggcca ctacaggtgt
     1561 gagcctgaat ctaatgaaag tgccgccctt tgatgtcagc ctgcagacaa agctggtact
     1621 tctagagcgg ctgcttaggc cggcctgagg acaggagatc tggagcatca agtgtggtca
     1681 ccacctaact cagtaaagac aggaaaacag cacaggccag ggacttccag taacccccgg
     1741 cgttgccctg cagcaggctg ggccaggccc tacaacagcc acacctgaga cacagggccg
     1801 agaatgtgga gccaccacca agtgtgataa tggcctgttc aaacctgtct gccatggtta
     1861 ggtgacccac aggagtgttt atattcattc tgggagccat tcagaaccaa gaggacaatg
     1921 agtcaggcta gaacgccctg ccaccctgct ctgcagtgac cccactatat gtttcttgcc
     1981 cctgaaccac acttgttgcc catggcctca ggagacgacg atgtaaaacc aggtctttac
     2041 agattagaca cacacacaca caccaccaat catggcagct gttatagtcc gaggcatgct
     2101 acctccattt cggattagtt ctgaggacat aacacgtttt cataaaagaa cagaaataaa
     2161 aattatgtta tatta
//
