LOCUS       NM_001044303            2519 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus AKNA domain containing 1 (Aknad1), transcript
            variant 1, mRNA.
ACCESSION   NM_001044303 XM_001078161
VERSION     NM_001044303.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2519)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC079051.1 and JAXUCZ010000002.1.
            
            On Aug 30, 2012 this sequence version replaced NM_001044303.1.
            
            Transcript Variant: This variant (1) represents the protein-coding
            transcript.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.2835476.1,
                                           SRR26360181.642012.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1603              BC079051.1         1-1603
            1604-1610           JAXUCZ010000002.1  199107451-199107457
            1611-1932           BC079051.1         1604-1925
            1933-2011           JAXUCZ010000002.1  199116129-199116207
            2012-2141           JAXUCZ010000002.1  199119217-199119346
            2142-2519           JAXUCZ010000002.1  199120025-199120402
FEATURES             Location/Qualifiers
     source          1..2519
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..2519
                     /gene="Aknad1"
                     /note="AKNA domain containing 1"
                     /db_xref="GeneID:691416"
                     /db_xref="RGD:1583957"
     exon            1..60
                     /gene="Aknad1"
                     /inference="alignment:Splign:2.1.0"
     exon            61..143
                     /gene="Aknad1"
                     /inference="alignment:Splign:2.1.0"
     exon            144..1235
                     /gene="Aknad1"
                     /inference="alignment:Splign:2.1.0"
     CDS             252..2270
                     /gene="Aknad1"
                     /codon_start=1
                     /product="protein AKNAD1"
                     /protein_id="NP_001037768.2"
                     /db_xref="GeneID:691416"
                     /db_xref="RGD:1583957"
                     /translation="MDEADFSEDMTYKQQEDLPYDGDFSQMKICTSYNFTLTNDTFPI
                     SLAGEDPQEAEAVVPREAGQSTALPQTWDKMTIASNRPDNDKQCALAPPVPANREDTS
                     KPHVSDTLLHHLSRQQFFRGQGAGSETLPEPLNAEGLGDSDALTNIISRYAKNYYPRE
                     QTPEVTGQPSPQNGASNSSKPCCSPGTEGENTSPLETPVTAAKSSHQEDPSLLTGTKG
                     PGDKYKSFLRQTPQRQLAHKASLGNGFRYSQAQVHYQFPDVSKVAPEVKIPRNIVTNK
                     PLTIANRGSCSLRLRNKSTVVQDNSGTLSGSNRVEKQPEQKRKFTEPLQQIQVQPATH
                     TCQEPLTGLEPEKGCLDLTPTPRKDPFSNSYIFQKISQGKQMCQKLEEQTEQLKNKVQ
                     EFSKRIKQDSLCCLRDIRLMTKEHVGCLPEPWGSQGREVKGLPRGEATSKELSELTPK
                     MKQKMEKRGHRRTNCGKFSSSNHEKTPHQDWPLSSDPGPSFQPDSGTGLQSNKCEADG
                     NKMQNSQRVFEEDPPKEFYYRYDTPGQDDLNHRGGFTFVQSHVLHENKISSSSCSKAK
                     WIWSWRANSEPFGDEHGSAAGKLPKTYLAPTSDLVTPSPHLCFFRIPRIQSSCASSSM
                     EEIESKILNSPLDHALRTATKLKKNTDQMIKSIAEDLTRAQRWRQQLK"
     exon            1236..1275
                     /gene="Aknad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1276..1421
                     /gene="Aknad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1422..1484
                     /gene="Aknad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1485..1603
                     /gene="Aknad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1604..1701
                     /gene="Aknad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1702..1824
                     /gene="Aknad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1825..1932
                     /gene="Aknad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1933..2011
                     /gene="Aknad1"
                     /inference="alignment:Splign:2.1.0"
     exon            2012..2141
                     /gene="Aknad1"
                     /inference="alignment:Splign:2.1.0"
     exon            2142..2519
                     /gene="Aknad1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagagtccaa gactaagccg ggtgttacca ggaagatgtt ccaggccttt ccagcaatct
       61 ggaaactttt ctttctaccc cttcaacttg ggtgtgaata agccggaact ctgctcacac
      121 aggcctgcct tctccactct gtgcatagaa cacacagtgc agacattcaa tgaaaaccag
      181 acaacatatt ttgagcttta agaatgccaa ggccagacag cggaggacca cagatatcag
      241 cccataccat catggacgaa gctgactttt cggaagatat gacttataaa cagcaggagg
      301 acttgcctta tgatggggac ttctctcaga tgaagatatg cacttcttac aactttacct
      361 taacaaatga cacctttcct atctcactgg caggagaaga ccctcaggaa gcagaagcgg
      421 ttgttccccg tgaggcgggc cagagcacag ctctgcccca gacttgggat aagatgacta
      481 ttgccagcaa caggcctgat aacgataaac agtgcgcctt ggctcctcct gttccagcca
      541 atagagaaga tacctccaag ccccacgtct cagacacttt actccatcat ctctccagac
      601 agcaattctt caggggtcaa ggcgctggct ctgaaactct cccagagccc ttgaatgctg
      661 agggtcttgg tgactcagat gctcttacaa atatcatttc gcgttatgca aaaaattatt
      721 accccagaga acaaacccca gaagtcactg gccagcccag tccacaaaat ggtgcgtcaa
      781 atagcagcaa accctgttgc tcccctggca cagagggaga aaatacctct cccttagaaa
      841 cgccagtgac tgctgcgaag agcagccatc aggaagatcc gagccttcta accggaacta
      901 aaggtccagg tgataaatac aaaagcttcc tgaggcagac gccccagaga cagctggctc
      961 acaaagctag tttaggcaac gggttcagat acagccaggc tcaagtgcac taccagtttc
     1021 cagatgtttc taaggttgct cccgaagtga agatccctcg gaacattgta actaataaac
     1081 cactcacaat agctaaccga ggcagctgtt ctcttaggtt gagaaataaa tcaacagttg
     1141 tgcaagataa ttcaggaacc ctgtctgggt caaatcgtgt tgaaaaacaa ccagagcaaa
     1201 aacggaaatt tactgaacct ttgcaacaaa tacaggtgca gcctgccaca cacacctgcc
     1261 aagaacctct cacaggactg gaacctgaga aagggtgctt ggatttgaca ccgacacctc
     1321 gaaaagatcc tttctcgaat tcttacatat ttcaaaagat ctcccaagga aaacagatgt
     1381 gccagaaact ggaagaacag actgagcaac tgaagaataa ggtacaagaa ttttccaaaa
     1441 gaataaaaca ggactctctc tgctgtttgc gagacataag gctgatgacc aaggaacatg
     1501 ttggctgtct tccagagccc tggggctcac aaggacgtga ggtgaaaggg ctgccaaggg
     1561 gagaggccac ctccaaggag ctcagtgagc tgaccccaaa gatgaaacag aaaatggaga
     1621 agaggggaca cagaaggacc aactgtggga agttttccag tagcaaccac gaaaaaacac
     1681 cacaccaaga ctggcctctc agttctgatc cagggcccag cttccaacct gattctggca
     1741 ctgggctgca gagtaacaaa tgtgaggcgg acggcaacaa gatgcagaac tcccagagag
     1801 tcttcgagga agacccaccg aaagaatttt attatagata tgacactcca ggacaagatg
     1861 acttaaatca cagaggagga ttcacctttg tccagtctca tgtcttacat gaaaataaaa
     1921 tctcttcatc ttcttgttca aaagcaaaat ggatctggtc ctggagagcg aactcagaac
     1981 cttttggaga cgagcacggt tctgcagcag gaaaacttcc caagacttac ctggccccta
     2041 cctccgacct tgtaacaccg tcaccccacc tctgcttctt caggattcct agaatccagt
     2101 cctcatgtgc cagcagcagc atggaagaaa tagaatctaa gattttaaac tcgcctttgg
     2161 atcatgcctt aaggacagca accaaactga aaaaaaacac cgaccaaatg atcaaatcca
     2221 ttgcagaaga ccttaccaga gcacagcgat ggagacagca gctaaaatag cactaactca
     2281 accctgggca gccaagtgtt aaagtgttgg gtcttctcca aaatatctta cttgtgacat
     2341 aatgcaggaa gatggttttc tagagaaaac actaaaactt taagaaatga attacgcaaa
     2401 gtgtttaaat ggaaaaaaaa aacggaaagt aagccctctg acatttatgt atttatgtga
     2461 aaataaatct atgttcttcc taattcttaa tgaaataaac acaataaaac gaatacctt
//
