LOCUS       NM_001030054            2200 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus akirin 1 (Akirin1), mRNA.
ACCESSION   NM_001030054
VERSION     NM_001030054.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2200)
  AUTHORS   Salerno,M.S., Dyer,K., Bracegirdle,J., Platt,L., Thomas,M.,
            Siriett,V., Kambadur,R. and Sharma,M.
  TITLE     Akirin1 (Mighty), a novel promyogenic factor regulates muscle
            regeneration and cell chemotaxis
  JOURNAL   Exp Cell Res 315 (12), 2012-2021 (2009)
   PUBMED   19406121
REFERENCE   2  (bases 1 to 2200)
  AUTHORS   Marshall,A., Salerno,M.S., Thomas,M., Davies,T., Berry,C., Dyer,K.,
            Bracegirdle,J., Watson,T., Dziadek,M., Kambadur,R., Bower,R. and
            Sharma,M.
  TITLE     Mighty is a novel promyogenic factor in skeletal myogenesis
  JOURNAL   Exp Cell Res 314 (5), 1013-1029 (2008)
   PUBMED   18255059
REFERENCE   3  (bases 1 to 2200)
  AUTHORS   Goto,A., Matsushita,K., Gesellchen,V., El Chamy,L.,
            Kuttenkeuler,D., Takeuchi,O., Hoffmann,J.A., Akira,S., Boutros,M.
            and Reichhart,J.M.
  TITLE     Akirins are highly conserved nuclear proteins required for
            NF-kappaB-dependent gene expression in drosophila and mice
  JOURNAL   Nat Immunol 9 (1), 97-104 (2008)
   PUBMED   18066067
  REMARK    Erratum:[Nat Immunol. 2008 Feb;9(2):216]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CV107792.1, CB761626.1, CV113375.1, CO384190.1, BF282685.1 and
            BQ782380.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CV107792.1, EV765392.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760434
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-499               CV107792.1         1-499
            500-875             CB761626.1         54-429
            876-1387            CV113375.1         122-633
            1388-1694           CO384190.1         298-604
            1695-2182           BF282685.1         1-488               c
            2183-2200           BQ782380.1         1-18                c
FEATURES             Location/Qualifiers
     source          1..2200
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..2200
                     /gene="Akirin1"
                     /note="akirin 1"
                     /db_xref="GeneID:595134"
                     /db_xref="RGD:1585989"
     exon            1..316
                     /gene="Akirin1"
                     /inference="alignment:Splign:2.1.0"
     CDS             100..675
                     /gene="Akirin1"
                     /codon_start=1
                     /product="akirin-1"
                     /protein_id="NP_001025225.1"
                     /db_xref="GeneID:595134"
                     /db_xref="RGD:1585989"
                     /translation="MACGATLKRPMEFEAALLSPGSPKRRRCAPLPGPTPGLRPPDAE
                     PPPFQMQTPPASLQQPAPPGSERRLPTPEQIFQNIKQEYNRYQRWRHLEVVLSQSEAC
                     TSESQSPSSALTAPSSPGAFWMKKDQPTFTLRQVGIICERLLKDYEDKVREEYEQILS
                     TKLAEQYESFVKFTHDQIMRRYGTRPTSYVS"
     exon            317..457
                     /gene="Akirin1"
                     /inference="alignment:Splign:2.1.0"
     exon            458..592
                     /gene="Akirin1"
                     /inference="alignment:Splign:2.1.0"
     exon            593..664
                     /gene="Akirin1"
                     /inference="alignment:Splign:2.1.0"
     exon            665..2183
                     /gene="Akirin1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2158..2163
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Akirin1"
     polyA_site      2183
                     /gene="Akirin1"
ORIGIN      
        1 gccattggag ccggcttggc ttgggagctg tagctgaaga gttgggttca gggctccttt
       61 gctgccgcgt ctgcgtctgg tctctggccc ttccgcggga tggcgtgcgg ggcgacactg
      121 aaacggccca tggagttcga ggcggcgctg ctgagccccg gttccccgaa gcggcgacgc
      181 tgcgcccctc tgcccggccc cactccgggc ctcaggcccc cggacgccga gccgccgccg
      241 tttcagatgc agacaccgcc ggcgagcctc cagcagcctg cccctcccgg cagcgagcgt
      301 cgccttccaa ctcctgagca aatttttcag aacataaaac aagaatataa tcgttaccag
      361 agatggagac atttagaagt tgttctcagt cagagtgaag cctgtacttc agaaagccaa
      421 tctccctcct cggcactcac tgcaccaagc tctccaggtg ctttctggat gaagaaggac
      481 cagcccacct ttacccttcg acaagtggga ataatatgtg agcgtctctt aaaagactat
      541 gaagataaag tccgggagga gtatgagcag atcctcagta ccaaactggc agaacagtat
      601 gaatcatttg tgaagttcac gcatgatcag atcatgcgac gatatgggac aaggccaaca
      661 agctatgtat cctgaagcct tcttgcctat ctgggtacca gatgtgacct caagagatgg
      721 ctgctgtata ctttttgcaa ctggtttgat atcacatttc agctccaact ttgcatcctg
      781 agaacactta aatgtttctg caggtccatt ttatacaact tgaaagacct taaaactttc
      841 tggttgccac aagcatatct ttcttttctg ctcatccact aaacagctgt gccctactgt
      901 gataggtttt ccagacaaaa gtacctggaa cagcagttta gcaaagaatg ccttcggtgg
      961 cactcaacat gtggagtctc cccaagcaca gctctgtgag aagtgtgagt gtgtgcgtgt
     1021 gtgtgtgtgt ctgtgtttta agttattatt tgtattgtgc aaaacttttt gatcttgggg
     1081 attctggctg tgaatttgat gcacgacaat tatggttaaa aacattttct tggtctacag
     1141 aagatcatta atgtttggtg accatataag ttgtaacagt gggttgttta tgtgtaggta
     1201 ttatcgttaa atacagggac tgtttccagg cacagaattt gaatcgtaag ttaggatgga
     1261 cattagacgt gattatgatg atatagggaa ggtctgcagt cctgaatctg caaatccatg
     1321 gtgagaaatt agaacaaact ggagacaggc catcagtata tggactctgc ctagctgtgc
     1381 tggaaaaata ctttgactcc aagccttaaa ataccctgtg gagtctgagc tcacctcatt
     1441 catacagtca tggagctccc tggacgccga acttctacag ggagaagatc tcccctggag
     1501 cagaagatca gggtgtgctc ggagcggagt gtgtaacagg agtgcggggc tgggccaggc
     1561 tcgcagcact gctacgtggg aggagccact cacctttgca tcagtttcaa catagaatct
     1621 ggagcctttg tccaggttcc cccaaattct cctctaaggt gtccgtgatc aactgttaga
     1681 gcttggtttt ggcaataccc tgcctgaagt tgcttaatgg ctgctctttg ccttgatccc
     1741 aaggctgtga gcagaaagca gcctctgttt tgaggaggtg ggagttaagt atacatttat
     1801 ttttactgtg acttgttcag gaccacattt tacaaaatgc cttgtttcct ttactattgt
     1861 tttggaaagg aaagttttat gaaaactgtt ttagtttgaa tatagaatag ttttattaat
     1921 tacggcttta ttttggaaaa atcttgagtt ttaattcaaa tgtttgccaa taccttccaa
     1981 agtaaggtga tattcagaga cagttgttgt gatcagctgg cttgcggaca tttctggggt
     2041 attcacattt gaagattcct tattaatgaa tgtctttgac ttaaatctaa ccaaaaactg
     2101 caacattatt ctttgtacat tttcattata tagtgttaac aagcttagtt gcaaacaaat
     2161 aaaatactta agctatttgt ttaaaaaaaa aaaaaaaaaa
//
