LOCUS       NM_001399246            4962 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus apical junction component 1 homolog (Ajm1),
            transcript variant 1, mRNA.
ACCESSION   NM_001399246
VERSION     NM_001399246.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4962)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.14458.1,
                                           SRR26643298.14447.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-183               JAXUCZ010000003.1  28799277-28799459   c
            184-4962            JAXUCZ010000003.1  28793078-28797856   c
FEATURES             Location/Qualifiers
     source          1..4962
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p13"
     gene            1..4962
                     /gene="Ajm1"
                     /gene_synonym="RGD1560470"
                     /note="apical junction component 1 homolog"
                     /db_xref="GeneID:362083"
                     /db_xref="RGD:1560470"
     exon            1..183
                     /gene="Ajm1"
                     /gene_synonym="RGD1560470"
                     /inference="alignment:Splign:2.1.0"
     exon            184..4962
                     /gene="Ajm1"
                     /gene_synonym="RGD1560470"
                     /inference="alignment:Splign:2.1.0"
     CDS             441..3365
                     /gene="Ajm1"
                     /gene_synonym="RGD1560470"
                     /note="uncharacterized protein C9orf172 homolog"
                     /codon_start=1
                     /product="apical junction component 1 homolog"
                     /protein_id="NP_001386175.1"
                     /db_xref="GeneID:362083"
                     /db_xref="RGD:1560470"
                     /translation="MTRTDPPDLLVSTVYQDIKVVDPGLTSKRQPCERSVARPAASTP
                     FNKRHCRSFDFLEALDEPTMETHPEPPPPEPAPPRARPRDGEPRRRTRSKSAPRVPQS
                     LTTAPASPPVLQRRGREAQRAVRVEGSPCREPSYPALRALANELHPIKLQPQRGGPGR
                     IAPLCATPGRCAPPESSAGPVPHVRCRLDIKPDEAVLQHAARSSRSGAPRETSSWART
                     VPQFHGLTVPGPRHVALSRTPTPSDLYCTDPRPLYCDGPLPGPRDYLEHRTQPFTTPP
                     GPTQFFYTEEPEGYAGSFTASPGLPFDGYCSRPYLSEEPPRPSPRRGGSYYAGEVRTF
                     PIQEPPSRSYYGETTRAYGLPFVPRYVPEEPRVHPGARAFYTEDFGRYRERDALARTY
                     PHPRSSPTWADWGPRPYRTLQVMPPPAPGPLLASWHGGTGTSPPRLVTDSRHYSRSWD
                     NILAPGPRREDPLGRGRSYENLLGREVRDTRGSSPEGRRPPVVVNLSTSPRRYAALSL
                     SETSLTEKGRTGECLGRNWYVTPEITITDNDLRSAERPTAKGWELPGGRPRQPVPVVP
                     EGPASSRQRSLEQLDELITDLVIDSRSPAQAPEPTAEGLGRQLRRLLDSRPAGPGGAT
                     ALAPSRSPPASAGSTEEPTGSGEAAEASPEPSADEDDLMTCSNARCRRTETMFNACLY
                     FKSCHSCYTYYCSRLCRREDWDAHKARCVYGRVGSVCRHVLQFCRDSSPVHRAFSRIA
                     RVGFLSRGRGVLFLGFPSPGSADNFLRFGLEGLLLSPTYLSLRELATHAAPLGSYARE
                     LAAAGRLYEPAECFLLSVSVAVGPGAAPPGAAARPAPRSPGPTVRKFAKVALAAGSPT
                     RPPPARGGEPDMETLILTPPPGTAGLDEEGEAGRRAREVAFIHIQRELRLRGVFLRHE
                     FPRVYEQLCEFVEANRRFTPTTIYPTDRRTGRPFMCMIMAASEPRALDWVASANLLDD
                     IM"
ORIGIN      
        1 agcactgagc cgccaggcca ggatcatagc tgctgtctcc aagcttctgc tgataccggg
       61 tgtgtgtgtg tgtgtgtata tatatatata tatatacata catatatagc ggggccaggt
      121 acacactgaa accgacttgg gttatgcagc ctactcgggt tcggctcgtg gagtaatcac
      181 caggccgcat ggactctgag gtttctcctg caggtgcttc caacataggc atggagccag
      241 caccaggagc cttgaccaag acctgcagcc agggctgctc catcccctat gccccaggta
      301 agccggacca gcacgtgggg tggggtgggg gtaaagggct tggggtgcag aggaggctgc
      361 cctgaccggt atctcctccc aggacaaaat ccccgaaagg ctgagtgact ggagctgcca
      421 gcctggggac gtcttttaag atgacccgca cggacccgcc ggacttgctg gtgtcgaccg
      481 tgtaccagga catcaaggtg gtggacccag ggctcacgtc caaacgccag ccatgtgagc
      541 gatccgtggc ccggcctgct gcgtccactc ctttcaacaa gcgccactgc cgtagctttg
      601 acttcttaga agcactggac gagcccacca tggagacaca cccagagccg ccacctcctg
      661 aacctgcgcc accgcgcgcc cggcccagag acggcgagcc tcggcgtcgc acccgttcca
      721 agagcgcgcc ccgtgtgccc caaagcctga cgactgctcc ggcttcaccg cccgtactgc
      781 agcgcagagg ccgggaagcc cagcgtgccg tacgggtgga ggggtcgccg tgccgggagc
      841 cctcgtaccc tgcgctgcga gctcttgcta atgaactgca ccctatcaag ctccagccac
      901 agcggggagg ccccggacgc atcgcgcctc tatgcgccac cccaggccgc tgcgcaccac
      961 cagaatcatc tgctggaccc gtcccccatg tccgctgccg tttggacata aagccggacg
     1021 aggcggtgct gcagcacgcc gcccgaagct cgcgatctgg cgcacctaga gagacgtcgt
     1081 cctgggctcg caccgtccca cagttccatg gactcacagt tcccggccct cgccatgtgg
     1141 ccctgtcacg cactcccacc cccagtgact tgtactgtac tgaccccaga ccactgtact
     1201 gcgatgggcc gctgcctggg cctcgggact acttggagca ccgcactcaa cccttcacaa
     1261 ctcctccagg tcccacccaa tttttctaca ccgaggagcc agaaggctac gcaggcagtt
     1321 ttactgcaag ccccggcctt ccctttgatg gctactgttc taggccctac ttgtccgaag
     1381 aaccccctag acccagtcca aggcgtgggg gcagctacta tgctggcgaa gtgcgcacct
     1441 tcccgatcca ggagcccccc tcccgctcct actacgggga gacaactcga gcctatggtc
     1501 tgcctttcgt tccccggtat gttccagaag agccccgggt gcacccagga gcccgcgcct
     1561 tctacacaga ggactttggg aggtaccgcg aacgcgatgc actggctcgg acttacccgc
     1621 atccacgcag cagcccaacc tgggctgact ggggtccgag gccttaccgc acccttcagg
     1681 tgatgccgcc tcctgcccct ggaccactgt tggcctcgtg gcacggtggc actggcacaa
     1741 gcccaccccg gctggttacc gatagccgcc actactctcg atcctgggac aacatcctag
     1801 ctcctggtcc tcgtcgtgaa gaccctctag gacgtggccg cagctatgag aacctcctgg
     1861 gacgcgaagt tcgggatacg cggggttcat cccctgaagg aaggcgtcca ccagtcgtag
     1921 tgaatctgtc cacctcaccc agacgctatg cagcactctc gctgtccgag acgtcgctga
     1981 cagagaaagg ccgcacggga gagtgcctgg gccgcaactg gtatgtcacg ccagagatta
     2041 ccatcacaga caacgacctt cgctcagcag agcgcccgac tgccaagggc tgggaattgc
     2101 ctggaggccg accacggcag cccgtacccg tggtccctga gggtcccgct tccagccgcc
     2161 agcgcagcct cgagcagctg gacgagctca tcaccgacct ggtcatcgac tcacgatcgc
     2221 cagcccaggc cccagagcct acggccgaag gtttaggccg ccaactacgc cgcctgctgg
     2281 actcacggcc tgcgggccct ggaggagcca ccgcgctggc gccgtcgcgc tcgcctccgg
     2341 cctcggctgg cagcacagaa gagcccaccg gctcggggga ggcagccgag gcctccccag
     2401 agcccagcgc agatgaggat gacttgatga cctgctccaa cgcgcgctgc cggcggacag
     2461 agaccatgtt caacgcctgc ctctacttca agtcatgcca cagctgctat acctactact
     2521 gctcgcgttt gtgccgccga gaggactggg atgcgcacaa ggcgcgttgc gtgtacggcc
     2581 gcgtgggcag cgtgtgccgc cacgtgttgc agttctgccg cgacagcagc ccagtgcatc
     2641 gcgccttctc gcgcatagcg cgcgtcggat tcctgtcgcg aggccgtggc gtgctgttct
     2701 taggctttcc gagcccgggc tctgccgaca actttctccg cttcggcctc gaagggctgc
     2761 tgctatcgcc cacctacctg tcgctgcgtg agctggctac acatgcggcg cccctgggta
     2821 gctatgcacg agagctggcg gccgccggga ggctctatga gccggcggag tgcttcctgc
     2881 ttagcgtgtc cgtggccgtg ggccccggcg ctgcaccccc gggagccgct gcccggcccg
     2941 cgccacgcag tcctgggccc acagtgcgca agttcgccaa ggtagccctg gccgctggca
     3001 gcccgacgcg gcctcctcct gcgcgtggcg gagagccaga catggaaacg ttgatcctga
     3061 cgccaccccc cggcactgcg ggcctggacg aagagggtga agccggccgg cgcgcgcgtg
     3121 aagtagcctt catccatatc caacgtgagc tgcgactgcg cggcgtcttt ctccgccacg
     3181 agttcccacg ggtctacgag cagctctgtg agtttgtgga ggctaaccgg cgcttcacgc
     3241 ccacaaccat ctatcccacg gatcggcgca caggccgccc cttcatgtgc atgatcatgg
     3301 ctgcttccga gccgcgtgca ctagattggg tagccagtgc caacctgctg gacgacatca
     3361 tgtgaaccat gagaccatta ggcccaggcc ccgaccccga gccctgccta ctctactcag
     3421 gccctgcctg atccatcatg accgccccca gagtccagac cacctggctc agcgcctccc
     3481 aacccccctg ggcctccctc agtcttctac aaattctcta ccctgagctc cacccactcc
     3541 acacctctaa ctttgcctag gagcccccac ccccgtcccg tttccaacca gcagcttctc
     3601 ttcctttctg ttcctaacag taccacccac attccacatc ctggggtcta cccaagccag
     3661 tcaaggagtg ggggctcccc aagggcctgg tcctcgccct cggtgctccc cactgggagg
     3721 tggggtggga ctgaggaccg ctgggctctg ccttctacta cactcatccc tttgggacaa
     3781 actcccttgg tgtacattgt gggtgcttgc tatagctctc caacccttct agtccagaca
     3841 tccatgttaa ccaaagccca acgtccttat tttaagcact tcccctcacc ctcctgtttg
     3901 ggttgtgtca ggctcagagg cctactctct gtgcacccat atgctgttga ggcgatgggc
     3961 atggccagca ctgtcctatc agtgttgcct gaccgtcaat gctctcacct ctggtcaccg
     4021 tagcctgggc tcttgtagga caagttggaa tactggggaa ttttcaggtc aaggccgagg
     4081 cacaatctac ccagccagat ggaaacctga ataggggaag cagtgtgggt tttgagcaag
     4141 ccagagttaa gatctggctg ggtaaggatt tgagctcccc aacagcagct tacccaacaa
     4201 gatggcctaa aaaatccacc ttccagagaa gatggaagct caggccttaa tcttccaggg
     4261 aggtgggaag tgtgtgctga tggattagca ggggacccta cagagagcag cacctaccat
     4321 tgaatgactt gggcatgagt aaggaacagg gctgccccta attacggact gaactaggaa
     4381 aggtgcggag tagtgagcca ccaagtgtga gaatggttag ggagccggtg ctgaggccta
     4441 ccctgattcc aatcctgtgt aaaaagtgcc acatactcgc cctggctgtg ctccaagctg
     4501 agagagaagc caaagcctga cgagctgtgg agaggtctag gcttccctaa accccttgcc
     4561 agacccctat agtctaaata tacctggatc tgagcccagg acttcgtgga gggtgtgacc
     4621 cagagagggc ttgagaccag tctctccaag ccctctccag aagccgcaag ccccttagga
     4681 gctccgaact tacaagtgcg agaacctggg acacacacct atgctgtgcg agggcgtaca
     4741 cgtgccagct accctctact gtatgtcccc gggacactcc agctctctct ccttggcccc
     4801 tgttttagca catgtcccga tgccgctctt gcaacacttg ctgccgtgct gcctgtcgcc
     4861 ctccccaggg gctccacatt ccttcctgtg gcaggctggt aagaatgccc ctgacaagaa
     4921 gggcgagtgc tttcgaacca agtaaaatag aacttgaatg ta
//
