LOCUS       NM_001101014            2588 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus adherens junctions associated protein 1 (Ajap1),
            mRNA.
ACCESSION   NM_001101014 XM_001076803
VERSION     NM_001101014.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2588)
  AUTHORS   Jakob,V., Schreiner,A., Tikkanen,R. and Starzinski-Powitz,A.
  TITLE     Targeting of transmembrane protein shrew-1 to adherens junctions is
            controlled by cytoplasmic sorting motifs
  JOURNAL   Mol Biol Cell 17 (8), 3397-3408 (2006)
   PUBMED   16707570
REFERENCE   2  (bases 1 to 2588)
  AUTHORS   McDonald,J.M., Dunlap,S., Cogdell,D., Dunmire,V., Wei,Q.,
            Starzinski-Powitz,A., Sawaya,R., Bruner,J., Fuller,G.N., Aldape,K.
            and Zhang,W.
  TITLE     The SHREW1 gene, frequently deleted in oligodendrogliomas,
            functions to inhibit cell adhesion and migration
  JOURNAL   Cancer Biol Ther 5 (3), 300-304 (2006)
   PUBMED   16410724
REFERENCE   3  (bases 1 to 2588)
  AUTHORS   Bharti,S., Handrow-Metzmacher,H., Zickenheiner,S., Zeitvogel,A.,
            Baumann,R. and Starzinski-Powitz,A.
  TITLE     Novel membrane protein shrew-1 targets to cadherin-mediated
            junctions in polarized epithelial cells
  JOURNAL   Mol Biol Cell 15 (1), 397-406 (2004)
   PUBMED   14595118
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001101014.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB179740.1, SRR26643298.30541.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            NMD candidate          :: translation inferred from conservation
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-188               JAXUCZ010000005.1  169302751-169302938 c
            189-991             JAXUCZ010000005.1  169250406-169251208 c
            992-1079            JAXUCZ010000005.1  169204473-169204560 c
            1080-1322           JAXUCZ010000005.1  169202341-169202583 c
            1323-1453           JAXUCZ010000005.1  169199828-169199958 c
            1454-2588           JAXUCZ010000005.1  169190477-169191611 c
FEATURES             Location/Qualifiers
     source          1..2588
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..2588
                     /gene="Ajap1"
                     /gene_synonym="neumo48"
                     /note="adherens junctions associated protein 1"
                     /db_xref="GeneID:687031"
                     /db_xref="RGD:1590138"
     exon            1..188
                     /gene="Ajap1"
                     /gene_synonym="neumo48"
                     /inference="alignment:Splign:2.1.0"
     CDS             160..1395
                     /gene="Ajap1"
                     /gene_synonym="neumo48"
                     /note="adherens junction-associated protein 1"
                     /codon_start=1
                     /product="adherens junction-associated protein 1
                     precursor"
                     /protein_id="NP_001094484.1"
                     /db_xref="GeneID:687031"
                     /db_xref="RGD:1590138"
                     /translation="MWIQQLLGLSSMPIRWPGRSLGSHLWILIAMLQLAVDFPSCDSL
                     GPGPEFRLLSRPQRPQRLWSLRTGPPTRLPTPAWSPRAARAERAHGPIQMQTPRARRA
                     HRPRDQVATLGPKGGLTKPPAATRSSPSLTSASASSSMTAGAAEHQSLLKRGRRHTHD
                     AEFNDFDFHGGRPTTETEFIAWGPTGDEEALESNTFPGGFGPTTVSILQTRKTTMAAT
                     TTTTAASTATAMTLQTKGVTESLDPWKRTPVGVSTTEPSTSPSNNGKDIQPPRILGET
                     SGLAVHQIITITVSLIMVIAALITTLVLKNCCAPSGHTRRNSHQRKMNQQEESCQNLT
                     DFTPARVPSSVDIFTAYNETLQCSHECVRASVPVYADETLHSTGEYKSTFNGNRSSSA
                     DRHLIPVAFVSEKWFEISC"
     exon            189..991
                     /gene="Ajap1"
                     /gene_synonym="neumo48"
                     /inference="alignment:Splign:2.1.0"
     exon            992..1079
                     /gene="Ajap1"
                     /gene_synonym="neumo48"
                     /inference="alignment:Splign:2.1.0"
     exon            1080..1322
                     /gene="Ajap1"
                     /gene_synonym="neumo48"
                     /inference="alignment:Splign:2.1.0"
     exon            1323..1453
                     /gene="Ajap1"
                     /gene_synonym="neumo48"
                     /inference="alignment:Splign:2.1.0"
     exon            1454..2588
                     /gene="Ajap1"
                     /gene_synonym="neumo48"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctctgactc tctgtgcgcc ccgcggccgg cgggcggcgg gcggcggcgg cggcccgaag
       61 ccgaagagcg gcgccacggg acgggagcga gcgggcgcgg gcgccgcgca gatggccggg
      121 gcaagcaagg tctgaggctg ggttccctga aacgtgacca tgtggatcca acagctttta
      181 ggactcagct ccatgcccat tcgctggccc ggccgctctc tcggaagcca tctctggata
      241 ctgatagcca tgctgcaact tgcggtcgac ttcccatcct gtgactcact gggccccggg
      301 cccgagttcc gactcctgtc acgtccacag aggccccaga ggctttggag tctgcgaact
      361 ggacctccaa cgaggctacc aacaccggcc tggagtcccc gtgcagcccg ggctgaacgt
      421 gcccacgggc ccatacagat gcagactccc cgtgctcgga gggcccacag gcccagggac
      481 caggtagcca ccctcggacc caaaggggga ctcaccaagc ctccagctgc cacccgatcc
      541 agtccttccc tcacctctgc atcagcctca tcctccatga ctgctggggc tgcagagcat
      601 cagagcctcc taaagcgggg tagaaggcac acacacgatg cagagttcaa cgacttcgac
      661 tttcatggtg gcaggcccac gacagagaca gaattcatag cctggggtcc tacaggggat
      721 gaggaagctc tggagtccaa caccttccct ggtggttttg gccccactac agtctccatc
      781 ttgcaaacac ggaagacgac tatggccgcc accaccacca ccactgcggc cagcacggcc
      841 accgccatga cactgcagac taagggggtc actgagtccc tggatccctg gaaaaggacc
      901 cctgttgggg ttagcacaac ggagccttcc actagtccca gcaacaatgg gaaagacatc
      961 cagcccccca ggatcttggg ggagacctca ggtctggctg tgcatcagat catcaccatc
     1021 accgtctccc tcatcatggt catcgccgcg ctcatcacaa ctcttgtctt aaaaaattgc
     1081 tgtgccccaa gtgggcacac tcggaggaac agtcaccagc ggaagatgaa tcagcaggag
     1141 gagagttgcc agaacttgac ggacttcacc ccggccaggg tgcccagcag cgtggacatc
     1201 ttcactgctt ataatgagac actgcagtgt tcccacgagt gtgtcagggc ctccgtgccc
     1261 gtctatgccg atgagacact gcactcgacc ggggagtaca agtctacgtt caatggaaac
     1321 cgatcctcct ctgcggatag gcatctcatc cctgtggcct ttgtgtctga gaaatggttt
     1381 gaaatctcct gctgactggc cgaaggcttt ttacctcctg ggggcggggc agacgccatg
     1441 tgtctgtttc atggattccg ttggtgaact tgtacaaaca aaacaacaaa acaaaaaatt
     1501 ataagaccta aacctaaact atctaagggg agggtcccgc acccgctgct tctgcttgcc
     1561 ggcgggaact cagcagagca ggacacccaa ggccaaatct atttttgtaa aattgctcgt
     1621 gcctaggggc gctcccttct cccagagttt tcttcggaga gcggaaagaa gaaatgcaag
     1681 agacggcaga gaaagccaag cagaaggaca ggaggcagct cccgacgcct gggacttgca
     1741 ccacgattct gaacctgtgc caataatacc actatgtgcc atgtaatgac ccggaagctc
     1801 ggcaggagcc gagcccagcg aaccacgcgg agagatctta acagaggaca ggggtggggg
     1861 atcacttccg gtagggtggg gatcacttcc ggtagggtgg ggatcacttc cggtagagtc
     1921 actatttctg gttaatatac atatataaat atataaatac caacacacag acacacaccc
     1981 ttttttttgt actgtagcaa tttttgaaga tcttcaatgt tcctttttaa aaaagaaaaa
     2041 aaagaattgt gttatagtca caaaacttga tttatttaac atgcttagta tgaacagaat
     2101 aaacttgtgt tttgtacttt ggcagctcac atcacacgca gcacacatgc gcacacacgc
     2161 acacgcacat acaaacatac aagcatttat acgcatatat tggagaaacc gttccgcagg
     2221 tgaccttgta tgtcgtcagt catgaaggga gacagcctca acccagatga cgagccctca
     2281 catgacaatt tacatccatc tgtcaaacac tcgctgaatg gtacttgtgt gtggcttttc
     2341 acttgggcca gaattaagaa taccgtggtt ttctctctat gtattcacac acacacggtc
     2401 cgtgctgcat ttcttccttt aactgtctga ggatgcttac ggccacacgc gtccacgtag
     2461 ccgactgcca acgagtgagc ctgagaacca ggttgggtgg gtggcggatt ctcgaacatt
     2521 tgtgttatac aaacatagac tgaactaaag aaattttcca gttccataat taaaggaata
     2581 tatccgta
//
