LOCUS       XM_039098495             744 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus allograft inflammatory factor 1
            (Aif1), transcript variant X3, mRNA.
ACCESSION   XM_039098495
VERSION     XM_039098495.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086038) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..744
                     /gene="Aif1"
                     /gene_synonym="BART-1; Bart1; iba1; mrf-1"
                     /note="allograft inflammatory factor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 9 ESTs, 662 long SRA reads, 8 Proteins"
                     /db_xref="GeneID:29427"
                     /db_xref="RGD:61924"
     CDS             189..629
                     /gene="Aif1"
                     /gene_synonym="BART-1; Bart1; iba1; mrf-1"
                     /codon_start=1
                     /product="allograft inflammatory factor 1 isoform X1"
                     /protein_id="XP_038954423.1"
                     /db_xref="GeneID:29427"
                     /db_xref="RGD:61924"
                     /translation="MKPEEISRGKAFGLLKAQQEERLDGINKHFLDDPKYSSDEDLQS
                     KLEAFKTKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIREVSSGSEETFSY
                     SDFLRMMLGKRSAILRMILMYEEKNKEHQKPTGPPAKKAISELP"
     polyA_site      744
                     /gene="Aif1"
                     /gene_synonym="BART-1; Bart1; iba1; mrf-1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ttgtttccct gtcagggctc ctccaagacc caaactaact gaagtcagac gcaccctctg
       61 atgtggtctg cacagggccc tgggctcagc tcaccccatt cttggagcag cctgcagact
      121 tcagactctc tcttccctac gggagaaagt cagccagtcc tcctcagctg cttgtcttaa
      181 cctgcaccat gaagcctgag gaaatttcaa gaggaaaagc ttttggactg ctgaaagccc
      241 aacaggaaga gaggttggat gggatcaaca agcacttcct cgatgatccc aagtacagca
      301 gtgatgagga tctgcagtcc aaactggagg ccttcaagac gaagtacatg gagtttgatc
      361 tgaatggcaa tggagatatc gatattatgt ccttgaagcg aatgctggag aaacttgggg
      421 ttcccaagac ccatctagag ctgaagaaat taattagaga ggtgtccagt ggctccgagg
      481 agacgttcag ttactctgac tttctcagaa tgatgctggg caagagatct gccatcttga
      541 gaatgattct gatgtatgag gagaaaaaca aagaacacca gaagccaact ggtcccccag
      601 ccaagaaagc tatttctgag ttgccctaat tggaggtgga tataacacgg tgggaccgag
      661 gaccttctaa tgacagcagc atgggaaaag aagaagcagt tgtgagccag agtcaaacta
      721 aataaataat gctccctagt gcaa
//
