LOCUS       XM_006256063            1027 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus allograft inflammatory factor 1
            (Aif1), transcript variant X3, mRNA.
ACCESSION   XM_006256063
VERSION     XM_006256063.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006256063.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1027
                     /gene="Aif1"
                     /gene_synonym="BART-1; Bart1; iba1; mrf-1"
                     /note="allograft inflammatory factor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 6 ESTs, 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:29427"
                     /db_xref="RGD:61924"
     CDS             193..912
                     /gene="Aif1"
                     /gene_synonym="BART-1; Bart1; iba1; mrf-1"
                     /codon_start=1
                     /product="allograft inflammatory factor 1 isoform X2"
                     /protein_id="XP_006256125.1"
                     /db_xref="GeneID:29427"
                     /db_xref="RGD:61924"
                     /translation="MKPEEISRGKAFGLLKAQQEERLDGINKHFLDDPKYSSDEDLQS
                     KLEAFKSEETGGGELEAGGSNRGKAGWLSCGRREVPSSSSFPLVVLCPALPILASPPP
                     GSLTSLSPHALLLYLLPWHCSAVSTANPHNSNYTLCSLSHPAKYMEFDLNGNGDIDIM
                     SLKRMLEKLGVPKTHLELKKLIREVSSGSEETFSYSDFLRMMLGKRSAILRMILMYEE
                     KNKEHQKPTGPPAKKAISELP"
ORIGIN      
        1 cagactgatc tgcaggcatc ctctcagatg attctgcttg tgtcaagttg acaaaactat
       61 ccagggcggt ccatctagag gccctgggct cagctcaccc cattcttgga gcagcctgca
      121 gacttcagac tctctcttcc ctacgggaga aagtcagcca gtcctcctca gctgcttgtc
      181 ttaacctgca ccatgaagcc tgaggaaatt tcaagaggaa aagcttttgg actgctgaaa
      241 gcccaacagg aagagaggtt ggatgggatc aacaagcact tcctcgatga tcccaagtac
      301 agcagtgatg aggatctgca gtccaaactg gaggccttca agagtgagga gactgggggg
      361 ggggagctgg aggctggggg ctcaaatcgt ggcaaggctg gctggctgtc ctgcggaagg
      421 agggaggtgc cttcaagctc ctccttccca ttggtggtcc tttgtcctgc tctccccatc
      481 ttagcatccc cgcccccagg ctccctcaca agcctctctc cccatgccct ccttctgtat
      541 cttctaccct ggcattgctc agctgtctct accgcaaacc cccacaatag caattatact
      601 ctctgctctc tttctcaccc agcgaagtac atggagtttg atctgaatgg caatggagat
      661 atcgatatta tgtccttgaa gcgaatgctg gagaaacttg gggttcccaa gacccatcta
      721 gagctgaaga aattaattag agaggtgtcc agtggctccg aggagacgtt cagttactct
      781 gactttctca gaatgatgct gggcaagaga tctgccatct tgagaatgat tctgatgtat
      841 gaggagaaaa acaaagaaca ccagaagcca actggtcccc cagccaagaa agctatttct
      901 gagttgccct aattggaggt ggatataaca cggtgggacc gaggaccttc taatgacagc
      961 agcatgggaa aagaagaagc agttgtgagc cagagtcaaa ctaaataaat aatgctccct
     1021 agtgcaa
//
