LOCUS       NM_001134956            6103 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus AT hook, DNA binding motif, containing 1 (Ahdc1),
            mRNA.
ACCESSION   NM_001134956 XM_342936
VERSION     NM_001134956.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6103)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Sep 13, 2008 this sequence version replaced XM_342936.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            CDS exon combination :: SRR21887621.101430.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMEA5760383, SAMEA5760386 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-84                JAXUCZ010000005.1  150512878-150512961
            85-266              JAXUCZ010000005.1  150555407-150555588
            267-497             JAXUCZ010000005.1  150561717-150561947
            498-535             JAXUCZ010000005.1  150562081-150562118
            536-5431            JAXUCZ010000005.1  150562477-150567372
            5432-6103           JAXUCZ010000005.1  150577423-150578094
FEATURES             Location/Qualifiers
     source          1..6103
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..6103
                     /gene="Ahdc1"
                     /gene_synonym="RGD1310031"
                     /note="AT hook, DNA binding motif, containing 1"
                     /db_xref="GeneID:362617"
                     /db_xref="RGD:1310031"
     exon            1..84
                     /gene="Ahdc1"
                     /gene_synonym="RGD1310031"
                     /inference="alignment:Splign:2.1.0"
     exon            85..266
                     /gene="Ahdc1"
                     /gene_synonym="RGD1310031"
                     /inference="alignment:Splign:2.1.0"
     exon            267..497
                     /gene="Ahdc1"
                     /gene_synonym="RGD1310031"
                     /inference="alignment:Splign:2.1.0"
     exon            498..535
                     /gene="Ahdc1"
                     /gene_synonym="RGD1310031"
                     /inference="alignment:Splign:2.1.0"
     exon            536..5431
                     /gene="Ahdc1"
                     /gene_synonym="RGD1310031"
                     /inference="alignment:Splign:2.1.0"
     CDS             610..5388
                     /gene="Ahdc1"
                     /gene_synonym="RGD1310031"
                     /note="A.T hook DNA-binding motif-containing protein 1;
                     AT-hook DNA-binding motif-containing protein 1"
                     /codon_start=1
                     /product="transcription factor Gibbin"
                     /protein_id="NP_001128428.1"
                     /db_xref="GeneID:362617"
                     /db_xref="RGD:1310031"
                     /translation="MRVKPQGLVVTSSAVCSSPDYLREPKYYPGGPPTPRPLLPTRPP
                     ASPPDKAFSTHTFSENPRPPPRRDPSSRRPPVLAKGDDLLPPRAARPVSQAHCPTPAP
                     DNNSLRHWDNGRVNLHPVVQLIDIMKDLTRLSQDLQHSGVHLDCGGLRLSRPPAPPPG
                     DLQYSFFSSPSLANSIRSPEERATPHAKPERPNHPLYEPEPEPRDSPQPGQGHGPGAT
                     ATATGLPPEPEPDGPDYPELADADILSELASLTCPEAQLLEAQALEPPSPQPEPQLLD
                     PQPRFLDPQALEPLGEGLELPPLQPLADPLGLPSLTLQALDTLPDSLESQLLDPQALD
                     PLPKLLDVPGRRLEPQQSLGHCQLAEPLRLDLCSPHGPPGPEGHPKYALRRTDRPKIL
                     CRRRKAGRGRKVDSGPEGRLLPLPMPTGLAAALAEPPPLPPPPPPPALSGPVPELEPE
                     SSQTPMVPTRKGKCRGVRRMVVKMAKIPVSLGRRNKTTYKVSSLSSSLSVEGKELGLR
                     VSSEPTPLLKMKNNGRNVVVVFPPGEMPIILKRKRGRPPKNLLLGPGKPKEPTVVAAE
                     AAAVTAATMAMPEVKKRRRRKQKLASPQPSYAADANDSKAEYSDVLAKLAFLNRQSQC
                     AGRCSPPRCWTPSEPESVHQAPDTQSISQFLHRVQGFRRRGGKTGGFGGRGGGHAAKA
                     ARCSFSDFFEGIGKKKKVVAVAATGVVGPGLTELGHPRKRGRGEVDAVTGKPKRKRRS
                     RKNGTLFPEQVPSGPGFGEAGAEWAGDKGGGWAPHHGHPGGQAGRNCGFQGTEARAFA
                     STGLESGASGRGSYYAGAPSGQTELSQERQNLFTGYFRSLLDSDDSSDLLDFALSASR
                     PESRKASGNYAGPPSSALPAQRGLATFPSRGAKGSPVAVGNSGAGTDPSFQPVLPSRQ
                     TFPPGRATSYGITPATSDCRAAETFPKLAPPPSAVARSPTTHPPANTYPPQYGGYGAG
                     QSVFAPAKPFSGQDCANSKDCSFAYGSGNSLPASPSSAHSAGYAPPPTGGPCLPPSKA
                     SFFNSSEGGPFSGSAPTPLRCDSRASTVSPGGYMVPKGTTASAASAASSSSSSFQPSP
                     ENCRQFVGASQWPFRQGYGGLDWASEAFSQLYNPNFDCHVSEPNVILDISNYTPQKVK
                     QQTAVSETFSESSSDSTQFNQPVGGGFRRANSEASSSEGQSSLSSLEKLMMDWNEASS
                     APGYNWNQSVLFQSSSKPGRGRRKKVDLFEASHLGFSTSTSATASGYPSKRSTGPRQP
                     RGGRGSGACSAKKERGGTAAKAKFIPKPQPVNPLFQDSPDLGLDYYSGDSSMSPLPSQ
                     SRAFGVGERDPCDFMGPYSMNPSTPSDGTFGQGFHCDSPSLGAPDLDSKHFPPLAHPP
                     TVFDAGLQKAYSPTCSPTLGFKEELRPPPSKLTACEPLKHGLQGASLSHAAQAHLSCR
                     DLPLGQPHYESPSCKGTAYWYPPGSAARSPPYEGKVGSGLLADFLGRTEAVCLSAPHL
                     ASPPATPKADKEPLEMTRPPGPPRGPAAATAGYGCPLLSDLTLSPVPRDSLLPLQDTA
                     YRYPGFMPQTHPGLGGGPKSGFLGPMAEPHPEDTFTVTSL"
     exon            5432..6103
                     /gene="Ahdc1"
                     /gene_synonym="RGD1310031"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgttgctgtc gccggcggaa gatagacgcc ccccgaaacc cctcgcttgg ctcggaccca
       61 cggagccggc agcccagcac tccgatggga gcttgtctga ttgtctactc atcggcctgg
      121 accccagagc caacccagct gagtgagtgc agagggtccc aggtgagggg cactgctcag
      181 gcctgggcag cgactgccct ggagaagctg atggtggtgg agacagaccg ttcctgctga
      241 gttgggcctc tacagtccct gctcagcccc tacctcacag gatcggtatg aagaatcaaa
      301 tgaagcaatg cctggacagc ttccagccca gtgcctggcg tgcagtaggt gctcactaaa
      361 cctgagctac ggtggtcctt tccaggcgct gtccacaccc caaggcctgg gctcaggccg
      421 aagttgctcc acaataccct cagctgacag ccagcgactg gcagagtccc caagcacggg
      481 ggccctctgt ttaccagaga tatccagtgt gacagcccag gcggcagagc cgagggttct
      541 ggtcccggcc tctctcaccc tcatgtcagc cccggccccg cccggcggcc cgaggaggac
      601 aaggtcagga tgcgtgtgaa gccccagggc ctggttgtga cttccagtgc cgtgtgcagc
      661 tctcctgact acctccgaga gcccaagtac taccccggcg gccccccaac cccccggccc
      721 ttgcttccca cccgcccccc tgccagccca cctgacaagg ccttttccac ccataccttc
      781 tccgagaacc cacgcccacc cccacgtcgg gaccccagct cccggcgtcc accagtcctt
      841 gccaagggag acgacctgct accccctcgg gcagcccggc ctgtctccca ggcccactgt
      901 cccacaccgg ccccagacaa caactccctc cgtcactggg acaacgggcg tgtgaacctg
      961 catccggtgg tgcagctgat tgacatcatg aaggacctga cacggctgtc ccaggacctg
     1021 cagcacagtg gtgtgcatct agactgcggc gggctgcgac tgagccgccc acccgctcca
     1081 ccgcccggcg acctgcagta cagcttcttc tcttcaccca gcctggccaa tagcatccgc
     1141 agccctgagg agcgtgcgac ccctcacgcc aagccagagc ggcccaacca ccccctctat
     1201 gaacctgagc ccgagcccag ggatagtccc cagcctggcc aaggccatgg tcctggagcc
     1261 acagccacgg ccactggtct gcccccagag cctgagccag atgggcctga ctaccctgag
     1321 ctggcagacg ctgacatcct cagtgaactt gcctccctta cttgccctga ggcccagctc
     1381 ctggaggctc aagcccttga gcctccttca ccacagcctg agccgcagct cctggacccc
     1441 cagccccgct tcctagaccc acaagcacta gagcctctag gagaaggttt ggaactacca
     1501 cccctgcagc ctcttgcgga tcctctggga ctgccgagct tgactctgca ggccctagac
     1561 accctacctg actccttgga atcccagctc cttgaccctc aggccctcga ccccctgccc
     1621 aagttgttgg atgtccctgg tcgacgtcta gagccccagc aatccttggg acactgccaa
     1681 ctggctgagc ccttacgcct ggacttgtgc tcacctcatg gtccccctgg gcctgagggc
     1741 caccccaagt acgccttgag gcgcactgat aggccaaaga tcctgtgtcg caggcggaaa
     1801 gctggaaggg gacggaaggt ggattcagga cctgaaggtc gtctgctgcc tcttcccatg
     1861 cctacagggc tggcagctgc cctggctgaa cccccaccgc tgcccccacc accaccacct
     1921 cctgctctgt caggcccagt tcctgaactg gagccagagt cctctcaaac tccaatggtc
     1981 cccacccgca aaggcaagtg caggggagtg cggcggatgg tggtgaagat ggcaaagatc
     2041 cctgtgtcac tagggcggag gaacaagacc acgtacaaag tttcatcctt gagcagcagt
     2101 ctgagtgtgg agggcaagga gctgggcctg agggtgtcgt cggagcccac cccattgctg
     2161 aagatgaaaa acaatggccg gaatgtggtg gtggtcttcc cgccaggtga gatgcctatt
     2221 attctcaagc gaaagcgtgg ccgccctcct aagaacctgc tgctgggtcc tggcaaaccc
     2281 aaagagccaa cagtggtagc tgccgaggct gccgctgtga cagcggccac catggccatg
     2341 ccggaggtga agaaacggcg gcggaggaaa caaaagctgg catccccgca gccgtcctac
     2401 gcagcagacg ccaatgacag taaggctgag tattccgatg tccttgccaa gctggccttt
     2461 ttgaaccgcc agagccagtg tgctgggaga tgctcgccac cccgatgctg gacacccagt
     2521 gagcctgagt cagtgcacca agccccggac actcagagca tctctcaatt cctgcaccgg
     2581 gtgcagggct tccggaggcg tggaggcaag acaggaggct ttggaggtag gggcggaggc
     2641 catgcagcca aggcagcccg ctgttccttt agtgactttt ttgagggcat tggcaagaaa
     2701 aagaaggtgg tagcagtggc agctactggg gttgtgggtc ctggtctcac tgagctgggg
     2761 catccacgca aaaggggccg aggcgaggta gatgctgtaa ctgggaaacc caagcgcaag
     2821 aggcggtccc ggaagaatgg gactctgttc ccagagcagg tgcccagtgg cccaggcttt
     2881 ggggaggccg gtgctgagtg ggctggggac aagggtggtg gctgggcccc tcaccatggg
     2941 cacccaggag ggcaagctgg ccgaaactgt ggtttccagg ggacggaggc cagggctttt
     3001 gcctccactg ggctggagag tggggcttca ggccgtggca gctactatgc tggtgcaccc
     3061 tcaggccaga cggagctcag ccaggaacgc caaaacctct tcactggcta ttttcggtcc
     3121 ctgcttgatt cagatgactc ctctgacctc ttggactttg ccctatcggc ctctcgccca
     3181 gagtcccgga aggcatcggg caactatgca gggcctccct ccagtgcgct gcctgctcag
     3241 cgggggcttg ccaccttccc aagccgggga gccaagggta gcccagtggc agtgggcaac
     3301 agtggagctg ggacagaccc ctccttccag cctgtcctgc cttcccgtca gacctttcca
     3361 ccaggccggg caacaagcta tgggataacc ccagccactt cagactgccg agcagctgag
     3421 accttcccaa agctggctcc ccctccttca gctgtggccc gctcgcctac aacccaccct
     3481 cctgccaaca cctacccacc tcagtatggt ggctatgggg caggacaaag tgtgtttgcc
     3541 ccagcaaagc ccttttcagg ccaggactgt gctaatagta aggactgcag ctttgcctat
     3601 ggcagcggca atagccttcc tgcctcaccc agcagcgccc acagtgctgg ctatgccccg
     3661 ccgcctactg ggggtccctg tctaccgccc agcaaggcct ccttcttcaa cagctctgag
     3721 gggggcccct tctctgggtc agctcccaca cccttgcgct gtgacagtcg agccagtact
     3781 gtctcacccg gtggctacat ggtacccaag ggcaccacag cttctgctgc ctctgcggcc
     3841 tcctcctctt cctcttcctt tcagccctca cctgagaact gtcggcagtt tgtgggggct
     3901 tctcagtggc ctttccggca ggggtatgga ggcctggact gggcctcgga ggcctttagt
     3961 cagctctaca atcccaactt tgactgccac gtcagtgaac ccaatgtgat cttggacatc
     4021 tcgaactaca cgccacagaa ggtgaagcag cagactgctg tgtccgagac cttctccgag
     4081 tcatcctctg acagcaccca gttcaatcag ccagttggtg gtggttttag gcgtgccaac
     4141 agtgaggcct caagcagtga gggccagtca agcctgtcca gcctggagaa gctcatgatg
     4201 gactggaatg aagcatcatc tgctcccggc tacaactgga accagagcgt cctctttcag
     4261 agtagctcaa agcctggccg tggccggcgg aagaaggtgg acctgtttga ggcctcacat
     4321 ttgggctttt caacatccac ctcagccact gcctctgggt atccgtccaa acggagcacc
     4381 ggaccccggc agcctcgggg tggccggggt agtggggcct gctcagccaa gaaggagaga
     4441 ggtggtacag cggccaaagc caagttcatc cccaagccac aaccagtgaa tccactgttc
     4501 caggacagcc cagaccttgg cctggactac tatagtgggg acagcagcat gtcaccactg
     4561 ccctcccagt cgagagcctt tggtgtggga gaacgagatc cctgtgactt catgggacct
     4621 tactccatga atccatccac accttctgat ggcacttttg gccaaggctt ccactgtgac
     4681 tctcccagcc tgggtgctcc tgaccttgac agcaagcatt tcccaccact ggcccaccca
     4741 cccacagtgt ttgatgctgg cctgcagaag gcctactcac ccacctgttc accgacacta
     4801 ggcttcaagg aagagttgcg gccaccacct tcaaagctga ctgcctgtga gcccctcaag
     4861 catggtcttc agggggctag cctgagtcat gcagcccagg cccacctgag ctgccgggac
     4921 ctaccgctag gccagcctca ctatgagtcc cctagttgca agggtacagc ctattggtac
     4981 ccaccaggtt cagctgcccg cagcccacct tatgaaggca aggtgggttc agggctgctg
     5041 gctgacttcc tgggcaggac ggaggctgtc tgcctcagtg cccctcacct ggctagccca
     5101 ccagccacgc ccaaggccga caaggagcca ttggagatga cccggccccc aggtccaccc
     5161 cgtggccctg ctgcagccac tgctggctat ggctgcccac tccttagtga cttaactctg
     5221 tcccctgtgc cgagggactc gctgctgccc ctgcaggaca ctgcctacag gtatccaggc
     5281 tttatgccgc agacacaccc tggcctgggt gggggtccta agagtggctt cctggggccc
     5341 atggcggaac ctcaccctga ggacacattt accgtcacct ccctgtagta ccaactgaag
     5401 tgccgactgg accacgaggt tttgttcctg gctttcagaa gaccaatgcc aagacccctc
     5461 ccagcgtcca cagcatcctc tggcaggagc gcctgcccct ctgcctccca cctgcccctt
     5521 gcaccccttg cagccccata tcccacccat gacccctcct tgcccatctc ctccacgcag
     5581 aagccgaagg tgagcccttt ctgcacaaaa ccagcaattg taaatacttt ttaaaatgta
     5641 caaaacttaa aaacaaaaca cagttttaga aaaagacaaa aaaaaaaaag agagagagag
     5701 cgagagcgag agagagagcg tgtgcaagag gttgtgagtg gggcttcgag gtgtccagag
     5761 cccctgcaag tgtgcactga gaaatttatc tacaggtcgt ttgacaaaaa tgaacaatat
     5821 cctatttatt gtatatactg ttttattata aattgtggat tgtatattgc attctgtaaa
     5881 cctgctgtgg tcccgtggtg tgcaaattcg catggtgggg ggggagggag aacctctttt
     5941 gggggctttt tttttttttt tctttttttt ttttttcctt tttcactctt gggttttctc
     6001 ttctgttgct gttgttgttt tttgttggca ggacacaccc aaagatccaa gtttgtatta
     6061 aaaagaaatg aagaaaagca aaaaaaaaaa aaaaaaaaaa aaa
//
