LOCUS       XM_006227856            4034 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 1-acylglycerol-3-phosphate
            O-acyltransferase 4 (Agpat4), transcript variant X1, mRNA.
ACCESSION   XM_006227856
VERSION     XM_006227856.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006227856.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006227856.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4034
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4034
                     /gene="Agpat4"
                     /note="1-acylglycerol-3-phosphate O-acyltransferase 4;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 31 ESTs, 1 long SRA read, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 39 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:170919"
                     /db_xref="RGD:619916"
     CDS             90..1334
                     /gene="Agpat4"
                     /codon_start=1
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase
                     delta isoform X1"
                     /protein_id="XP_006227918.1"
                     /db_xref="GeneID:170919"
                     /db_xref="RGD:619916"
                     /translation="MAVMNHRGRDGFLSPGSFSLLELFRHTYLSLENPRIMDLIGLLK
                     SQFLCHLVFCYVFIASGLIVNAIQLCTLVIWPINKQLFRKINARLCYCVSSQLVMLLE
                     WWSGTECTIYTDPKASPHYGKENAIVVLNHKFEIDFLCGWSLAERLGILGNSKVLAKK
                     ELAYVPIIGWMWYFVEMIFCTRKWEQDRQTVAKSLLHLRDYPEKYLFLIHCEGTRFTE
                     KKHQISMQVAQAKGLPSLKHHLLPRTKGFAITVKCLRDVVPAVYDCTLNFRNNENPTL
                     LGVLNGKKYHADCYVRRIPMEDIPEDEDKCSAWLHKLYQEKDAFQEEYYRTGVFPETP
                     WVPPRRPWSLVNWLFWASLLLYPFFQFLVSMVSSGSSVTLASLVLIFCMASMGVRWMI
                     GVTEIDKGSAYGNIDNKRKQTD"
ORIGIN      
        1 acaggtctca ttctcttggc agacaaaacc agcaaaatac aggtctaagc catgactctt
       61 ccacccgtca agccaccctt aatggatgga tggctgtgat gaaccataga ggcagagacg
      121 gtttcctgag ccccggatct ttctcccttc tggaactatt ccgccatacg tacttgtctc
      181 ttgagaatcc ccgcatcatg gacctcatcg ggctgctgaa gtcccagttt ctgtgtcacc
      241 tggtcttctg ctacgtgttc atcgcctccg ggctcattgt caacgccatc cagctgtgca
      301 cgctggtcat ctggcccatc aacaagcagc tgttccgaaa gataaacgcc agactctgct
      361 actgcgtctc cagccagttg gtgatgcttc tggagtggtg gtcaggtacg gagtgtacca
      421 tctacaccga cccgaaggcc tccccccact acgggaagga aaacgccatc gtggttctca
      481 atcacaagtt tgagattgac tttctctgtg gctggagcct ggctgagcgc ctagggatcc
      541 tggggaactc caaagtcctg gccaagaaag aactggctta tgtccccatc attggctgga
      601 tgtggtactt tgtggaaatg atcttctgca cacgcaagtg ggagcaagat cggcagacgg
      661 ttgccaagag cctgctgcac ctccgggact acccagagaa gtatctgttt ctgatccact
      721 gtgagggcac acggttcaca gagaagaaac accaaatcag catgcaggta gcccaagcca
      781 aggggctgcc cagcctcaag catcacctgc tgccacgcac caagggcttt gctatcactg
      841 tgaagtgctt gcgagatgtt gtcccagccg tatatgactg tacactcaat ttcagaaaca
      901 atgaaaaccc aacactgctg ggagtcttaa atggaaagaa atatcacgct gactgctacg
      961 ttaggaggat ccccatggaa gacatccctg aggatgagga caagtgctca gcctggctac
     1021 acaagctcta ccaggagaag gatgcctttc aggaggaata ctacaggaca ggggtcttcc
     1081 cagagactcc ctgggttccc ccacggcggc cctggtctct ggtcaactgg ttgttctggg
     1141 cgtcgctgct gctctatcct ttcttccagt tccttgttag catggtcagc agcggttcct
     1201 cggtgacgct ggccagcttg gtcctcatct tctgcatggc ctccatggga gttcgatgga
     1261 tgattggtgt gacagaaatc gacaagggct ctgcctatgg caacatcgac aacaaacgga
     1321 aacaaactga ctgatgtgga aaatgtcacc tccaaaggga accgtggggg acagttggcc
     1381 tctgcttagc ctttatagca gggttcagtg atggagactg gagggccttg ctgggacaaa
     1441 cagaaaccac agcccctcca gtcatggagt ttgccttggc gctggatggg aaaggaagat
     1501 ggttttatac ctttcccctc ccccatcccc gtgtgaatta ctgggtttgg ttacgtttct
     1561 tttcagttgc acacgtgttt gtgtgtatgt gtgtgtgaga gagatggggg tgaggagaat
     1621 gagtgtgtgg ttgcgtgtgc acttgtgacc ctgtgacagt agggtctgtg aggctgcagg
     1681 gaagggcagg gctggggtgg aagagaaggt gtgtgtccct gtcatcccgt ggtgctgcgt
     1741 cttctctaac catcgatcgc tggagacgga gtgaagtgtt tgggtaagac aactaaatta
     1801 tgcctccaaa taagaaaaag aattaaagtg tttgtctggg tcatctgtgg caagtattta
     1861 cacaaatctg ctacccccca cccccactct tccctggctt tgggtattgc atatggcagc
     1921 ttctcaccag ctttgctccc agtgggggct gctgagagct tgagtgaggt gcacacactg
     1981 acaggtcact tgagggtgcg cgcgcgcgcg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     2041 tgtgtgtgtg tgtgtgtctt agtcacttgt caatgtcagg aagggtttgt tttggttcac
     2101 agttcaaggg tacagtccat catggtgggg ggtcatggca gtaggaacgg gaagaatcct
     2161 gtcggtcaga gagaagagac ggatgctggt gcttacctct ctttcgctca gttcggagcc
     2221 ccagcacaca gaatagtgaa gctatgatag gtccgcccct atccatcact ctattagttt
     2281 aatctagaat cccttggatt acctgtacag gcacaaccgg agactcgcct cctaggtgac
     2341 tctgcatcct gtcaacttga caggcagcat gaaccagcac aggatgccaa tgcagagacg
     2401 tgggcgtcgg agcccctctg agcaagagcc aggacgaggg tgctgggagg ccagctgaga
     2461 gcttgcttcc aacgaggcag agaggacagt ctgatgaggc ggcatccact agtcttgaag
     2521 gtcttaagct ttgaaacgga atgttatgac aacctcagaa actgtcacag gagtggggaa
     2581 gctcttaaag caaggtcagg agcattttac aaaatggaac cacgcccctt ttcagctgtc
     2641 ctgtggtacc cactaaggag ccgggtgcta cttaaaaaca caaatgagcc catctggggg
     2701 gctctgctct cccccacact gagctcctgt tagaacatga aagggtggct gctctcctct
     2761 gcagtctttg gagaatggcc catggcagac atttgcagac tgagggcagt cagcagaggc
     2821 tggatacaaa caaaacaaga agaaaaaggt tagcgtttta agacggtacc tgaaaggtat
     2881 tcgttataag acggagaagc tggcagtgct tggactgatg ccctcctccc tgtgtgcagc
     2941 tatgcaccac ctggtacaac cacacacccc cactagaaaa gctgcccatg gggcccacaa
     3001 aggcacatcc tgtccagtgt cactgcagac ttaaatgtct gtgcaccgag tcatcaaatg
     3061 gcagccacac agtcaagtgt gactctgacc ttgaagagcc aaggggtgac ccgggttcta
     3121 gagccctctg tttaagggac aacgtattat aaacacaaat aaatctgggc ttgcagaaat
     3181 cagaacacca cattctgggt tttttgtgta ccagagtaga cagtgcaggg gaggctgagt
     3241 tcccacaagg tgctaagccg ggcacatctg ccctgccatg cgggccagaa atcacacaga
     3301 gaaaactgga cgctactctt caggggaccc tgtgttgtag aggccctgta ggcctccctt
     3361 ggatcctaag gccactttat ctgggacctg agcttgcctt cactgaattc tgtggcttgg
     3421 ccaagtaaat attcaatcca ggccatccag cctcctgacc tccagggggc catctgctca
     3481 attgtaaaat aggaatgaca ctcacccacc ccctgggttg ctgtgagagt gggaagaggc
     3541 taaccttggg aaggtaggat cacagaacaa atcgggtgga ggaatggcag gcggcttcta
     3601 agctgtgact tctcaaagta cttggcaaga accagaccgt ggtacaaggc ttagtctctt
     3661 tggttttgac ctgtctttgg tggcagggca gagacatttt aggtaaactg aatggggagt
     3721 ggtatctgaa tggccttaga acacaaaagg gaacaggagt ttgaggggaa ccccagcagc
     3781 gtgcctcagc tggctggcct gacctgactc tctccctagc ccgtttcctt aattcagagt
     3841 cagggattca caggatcctt tgaaaagatc ttggcatgat ggctacagaa cggaggctca
     3901 ctgaaaacct ccactaggtt ttcagaaaat caattgtttt tctatgtgct aacagagacc
     3961 tggaatacat cttaacgcct taatttctaa agtgtgcaaa accttggaaa agtaacagga
     4021 tgttcaaaac gtta
//
