LOCUS       XM_039103455            3251 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus angiogenic factor with G patch and FHA
            domains 1 (Aggf1), transcript variant X1, mRNA.
ACCESSION   XM_039103455
VERSION     XM_039103455.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 3, 2024 this sequence was replaced by
            NM_001427779.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3251
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3251
                     /gene="Aggf1"
                     /note="angiogenic factor with G patch and FHA domains 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 33 ESTs, 1 long SRA read, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 223 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:310005"
                     /db_xref="RGD:1310888"
     CDS             318..2435
                     /gene="Aggf1"
                     /codon_start=1
                     /product="angiogenic factor with G patch and FHA domains
                     1"
                     /protein_id="XP_038959383.1"
                     /db_xref="GeneID:310005"
                     /db_xref="RGD:1310888"
                     /translation="MASEAPSPPPASPEPELAQLRRKVEKLERELRSCKRQVREVEKL
                     LHHTERLYQNAESNNQELRTQVEELSKILRCGKNEDNQKSDVEVQTESHAAWSSSDYY
                     YQTYYKDDNLPSKETELCAQQSPYVQASALDSKAESRIDSESYSTEMAESVNHRHEDH
                     FTSDSQESASALAEGSALEGSSLAESLRAAAEAAVSQTSFTYDESTGLYFDHSTGFYY
                     DSENQLYYDASTGIYYYCDVESGRYQFHSRVHLQPYQTSSTKPSKDKKLKKRRKEPGF
                     WTATEEKDLSSEDQKVCSIEYINCSEDENSGNVKKKARTDTSHKSSPLPLAGAVSGDM
                     VESPGDEASASLKDERERASESEPEEGEITDSQSECSYDGDPSSGDRQSSEESDDEDD
                     EEKIWPPCIRVIVIRSPVLQMGSLFIITAVSPATIGREKDMEHTVRIPEVAVSKFHAE
                     VYFDHDLQSYVLVDQGSQNGTIVNGKQILQPKTKCDPYILEHGDEVKIGETVLSFHIH
                     PGSETCDGCEPGQVRAHLRLDKKDEPLVGPALSKEEKELERRKALKKIRVKYGLQNTD
                     YEDEKALKNPKYKDRAGKRREQVGSEGTFQRDDAPASVHSEITDSNKGRKMLEKMGWK
                     KGEGLGKDGGGMKTPIQLQLRRTHAGLGTGKPSSIDDVHFLQNKSKKNWDKARERFAE
                     NFTEKKACKEAPGPIPWVTGTAE"
ORIGIN      
        1 cagtgtttcc ggctcagccc ggaactagag cgcttccgct tggttctcct tagttctctg
       61 atcccttggc ttcttcgagg ctgtcactag gagggggtcc gagctcacgg ccacgcggcc
      121 cgggcggggt tggctttgtc ccctagctcg caaccccggc cgccgacttt gggacgacat
      181 ggcccgggcc ggctgcggtc gtccgggcgt gaggccgcct cttgcagccc gcgcgctcct
      241 gtggcccctg ggccagcggg caccggtgtt gtcttaagca gcccctccgc gtccgcgggc
      301 tccgcgatcc cggccgcatg gcctccgagg cgccttcgcc gccgcccgcc tcccccgagc
      361 cggagctggc gcaactaagg cgaaaggtgg agaagttgga gcgcgagctg cggagctgca
      421 agaggcaggt gcgggaggtg gagaagctgc tgcatcacac ggagcggctg taccagaacg
      481 ccgagagcaa taaccaggaa ctccgcacgc aggtagaaga gcttagtaaa atactgcgtt
      541 gtgggaaaaa tgaagataat caaaagtctg atgtagaagt acagacagag agccacgctg
      601 cttggtcaag ttcagactat tactatcaga catattataa ggatgataat cttcccagta
      661 aagagacgga actgtgtgca cagcagagtc cgtatgttca agcgtctgct ctcgactcta
      721 aagccgagtc acgaatagac agtgagagct atagtactga gatggcagaa agtgttaacc
      781 acagacacga ggatcacttc acctccgatt cacaggagag tgcgtccgca ttagcagaag
      841 gctcagcgct cgaagggtcc tcgctcgctg aaagcctgag agctgccgca gaagccgctg
      901 tgtcgcagac cagcttcacc tacgacgaga gcacaggcct gtactttgac cacagcactg
      961 gattctacta tgattctgag aaccaactgt attacgatgc ttccaccggg atttactact
     1021 actgtgatgt ggaaagtggt cggtaccagt ttcactcgcg cgtacattta cagccttatc
     1081 agacatccag cacgaaacca agcaaagata aaaaattaaa gaagagaaga aaggaaccag
     1141 gtttctggac agcaactgaa gagaaggatt tgagttcaga agatcagaaa gtctgcagta
     1201 tagaatatat aaattgcagt gaggatgaaa attctggaaa tgtgaaaaag aaggccagga
     1261 cagacacttc tcacaaaagt agtcctttac cgctcgctgg ggcagttagt ggagacatgg
     1321 tggagtctcc tggagatgag gcttcagctt cactgaagga tgagagagag agagcgagtg
     1381 agagcgagcc agaggaaggc gagattacag actcgcagag tgagtgcagt tatgacggag
     1441 acccgagcag tggggacagg cagtcctcag aggaatccga cgacgaggac gatgaggaaa
     1501 aaatttggcc gccctgtatt cgggtgattg tcatcagatc tccagtgttg cagatgggct
     1561 cgctgttcat catcacagct gtgagcccag ccaccatcgg gagagaaaag gacatggaac
     1621 acactgtgcg gatccccgaa gttgccgtca gtaagttcca tgcagaagtt tactttgacc
     1681 atgacttgca gagctacgtt cttgtggatc agggcagcca gaatggtacc attgtcaacg
     1741 ggaaacagat tcttcagcca aaaactaaat gcgatcctta catccttgaa cacggtgatg
     1801 aagtaaaaat cggggagact gtgctgtctt ttcacattca ccctggcagt gagacttgcg
     1861 atggctgtga accggggcag gtcagagctc accttcgcct tgataaaaaa gatgagcctt
     1921 tggttggtcc agcattaagt aaggaagaaa aagagttgga aagaagaaag gcactaaaga
     1981 aaatacgagt aaagtatggt ttgcagaata cagactatga agatgaaaag gcattgaaga
     2041 atcctaaata taaagacaga gctggaaaac gcagggagca ggttggaagc gaagggactt
     2101 tccaaagaga tgatgcccct gcatctgttc actctgaaat tacagatagc aacaaaggcc
     2161 ggaagatgtt ggagaagatg ggttggaaaa agggagaagg cctggggaag gacggtggcg
     2221 ggatgaaaac accgatccag cttcagctcc ggcggacaca tgcaggcttg gggacaggga
     2281 agccatcctc aatcgacgat gttcactttc tccagaataa gagcaagaaa aactgggaca
     2341 aagcacgaga gcggtttgca gaaaacttca cagagaagaa agcttgcaaa gaagccccag
     2401 ggcccatacc gtgggtgaca gggactgcag agtgaagaca cgtcacaggg gagaggggct
     2461 tccaacaaga gtttgaaaac tttaatgtag aagctgtgtc cctaaaaagt cagtaacggg
     2521 ggaactctta agatggctcc ctgacccaca catgtgtggg gacatgtggt ttgcagcttg
     2581 tagaaagtgg ttcttactca gcaagcagga actgaatgga cttgcaggaa atgggctcga
     2641 ggtgacaggc acaggagggc tgctttgtcc tagcctgtca ctcacccctg tggagggcag
     2701 agtgcgcata cccactaatg acttcggcca tgtgtcctgt ctccatgtcg tcatcatgac
     2761 atacagatat caaatatcaa aagtttataa acaagtctct gtgtatacct gtttatacct
     2821 tttagaactt aggttttttt ttaaaaagtc gagcaaccac aggttgtgga gcctaatttt
     2881 actatcctag agataattgc agtaataata ttgaggaatt ggcaggtgac atgttgtaga
     2941 aatttgtctc actgttttct tctgtgaaga atgttgtttg gactctgtgt gcagcatttg
     3001 cctttggtct tccagctgat ggagtatttg atatggacga ctgggtgcag tgttggcaca
     3061 ggcagtgttc tagcattttt agttttgata aataccattg caggcaatgg gattgtgctc
     3121 aagaactctg gtgactagga cggatgggta ctaagccaag gcttcaaaca cttactggaa
     3181 atgtcttcaa atgcaataaa aaaaaaaaac attttaaaga cttgatttct tgaataaatg
     3241 atttaaagat a
//
