LOCUS       NM_001400969            2895 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus ArfGAP with FG repeats 2 (Agfg2), transcript
            variant 1, mRNA.
ACCESSION   NM_001400969 XM_006249140
VERSION     NM_001400969.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2895)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Jan 31, 2022 this sequence version replaced XM_006249140.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1608610.1,
                                           SRR26643292.47388.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760400
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-345               JAXUCZ010000012.1  24649061-24649405
            346-439             JAXUCZ010000012.1  24665434-24665527
            440-555             JAXUCZ010000012.1  24666240-24666355
            556-712             JAXUCZ010000012.1  24669700-24669856
            713-878             JAXUCZ010000012.1  24670512-24670677
            879-1004            JAXUCZ010000012.1  24672814-24672939
            1005-1037           JAXUCZ010000012.1  24673777-24673809
            1038-1158           JAXUCZ010000012.1  24677807-24677927
            1159-1241           JAXUCZ010000012.1  24678100-24678182
            1242-1322           JAXUCZ010000012.1  24678304-24678384
            1323-1451           JAXUCZ010000012.1  24679927-24680055
            1452-1537           JAXUCZ010000012.1  24683165-24683250
            1538-2895           JAXUCZ010000012.1  24683856-24685213
FEATURES             Location/Qualifiers
     source          1..2895
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q12"
     gene            1..2895
                     /gene="Agfg2"
                     /gene_synonym="Hrbl"
                     /note="ArfGAP with FG repeats 2"
                     /db_xref="GeneID:304375"
                     /db_xref="RGD:1306590"
     exon            1..345
                     /gene="Agfg2"
                     /gene_synonym="Hrbl"
                     /inference="alignment:Splign:2.1.0"
     CDS             125..1591
                     /gene="Agfg2"
                     /gene_synonym="Hrbl"
                     /note="isoform 1 is encoded by transcript variant 1;
                     arf-GAP domain and FG repeats-containing protein 2;
                     arf-GAP domain and FG repeat-containing protein 2; arf-GAP
                     domain and FG repeat-containing protein 2-like"
                     /codon_start=1
                     /product="arf-GAP domain and FG repeat-containing protein
                     2 isoform 1"
                     /protein_id="NP_001387898.1"
                     /db_xref="GeneID:304375"
                     /db_xref="RGD:1306590"
                     /translation="MVMAAKKGPGPGGGVAGSKAEAEAASEVWCRRVRELGGCSQAGN
                     RHCFECAQRGVTYVDITVGSFVCTTCSGLLRGLNPPHRVKSISMTTFTEPEVLFLQSR
                     GNEVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYEKKRWYVPPEQVKGASYSKGS
                     VSATPVQGSVPEGKPIRTLLGDPVPSLSDAASTSSQSVSQSQARTAQARSSQPPSHSS
                     TKKASTDLLADIGGDPFAAPQVAPAFASFPGFGGQNPSHGGFANFDAFSSSPSSSAFG
                     SLPPSVQTPFQAQPTPAANRMLTGSYSFGSSQMSAFGVAPLAAASQPNSLADVGGLLE
                     PRMAAGGLPGSVFGMPSQVPALQSAVPGVGGSTGLPFGAFTNPFTTPAQPQLPSTNPF
                     QPNGIASGPGYGMGSVQPGLLQPAPPSGAFASTFPAPVFPTQAGLVEQQNGSSFGDLG
                     TSKLGQRPLSQPAGISTNPFMTGSSAFASKPPTTNPFL"
     exon            346..439
                     /gene="Agfg2"
                     /gene_synonym="Hrbl"
                     /inference="alignment:Splign:2.1.0"
     exon            440..555
                     /gene="Agfg2"
                     /gene_synonym="Hrbl"
                     /inference="alignment:Splign:2.1.0"
     exon            556..712
                     /gene="Agfg2"
                     /gene_synonym="Hrbl"
                     /inference="alignment:Splign:2.1.0"
     exon            713..878
                     /gene="Agfg2"
                     /gene_synonym="Hrbl"
                     /inference="alignment:Splign:2.1.0"
     exon            879..1004
                     /gene="Agfg2"
                     /gene_synonym="Hrbl"
                     /inference="alignment:Splign:2.1.0"
     exon            1005..1037
                     /gene="Agfg2"
                     /gene_synonym="Hrbl"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1158
                     /gene="Agfg2"
                     /gene_synonym="Hrbl"
                     /inference="alignment:Splign:2.1.0"
     exon            1159..1241
                     /gene="Agfg2"
                     /gene_synonym="Hrbl"
                     /inference="alignment:Splign:2.1.0"
     exon            1242..1322
                     /gene="Agfg2"
                     /gene_synonym="Hrbl"
                     /inference="alignment:Splign:2.1.0"
     exon            1323..1451
                     /gene="Agfg2"
                     /gene_synonym="Hrbl"
                     /inference="alignment:Splign:2.1.0"
     exon            1452..1537
                     /gene="Agfg2"
                     /gene_synonym="Hrbl"
                     /inference="alignment:Splign:2.1.0"
     exon            1538..2895
                     /gene="Agfg2"
                     /gene_synonym="Hrbl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcgtggtccg ggctgcagga gctggtgtca gggttgccgg gcgtgcgaag gtggcggagg
       61 cgggaaaggc agctagcggt taaaggagag ctaccgctga cttgcagggg aacctggagg
      121 agagatggtg atggcggcta agaagggccc gggcccgggt ggcggagtcg cagggagcaa
      181 agcggaggct gaagcggctt cggaggtgtg gtgccgccga gtgcgggagc tgggcggctg
      241 cagccaggcc gggaaccgtc actgtttcga gtgcgcccag cgcggggtca cgtatgtgga
      301 catcaccgtg ggcagcttcg tctgcaccac ctgctccggc ctcctgagag gcctgaaccc
      361 ccctcatcgg gtcaagtcca tctccatgac aactttcact gagcctgaag tcctgttcct
      421 ccaatctcgt ggaaatgagg tctgccggaa gatctggctt ggtctttttg atgctcggac
      481 atcgttggta ccagactcca gggatcctca gaaggtgaag gagtttctcc aagaaaaata
      541 tgagaagaaa agatggtacg tccccccaga gcaagtcaag ggggcctctt acagcaaagg
      601 cagtgtctct gctacccctg tccagggctc tgtcccagaa gggaaaccta ttcggacact
      661 tctgggagat cctgtgccat ctctctcgga tgctgcttct acttcaagcc agtctgtcag
      721 ccagtctcag gctcgcacgg cacaggccag gagctcccag cctccttccc attcatccac
      781 caagaaagcc agcactgacc tgctagccga tattggagga gacccctttg ctgctcccca
      841 ggtggcacca gcctttgcct cattcccagg ttttggaggc cagaatcctt cccatggagg
      901 ctttgccaac ttcgatgcct tcagcagcag ccctagctct tctgcctttg gaagcctccc
      961 tccatcggtc caaaccccgt tccaggccca gccgacccct gcagccaatc ggatgctaac
     1021 tggaagttac agctttggga gtagccagat gtctgcgttt ggtgttgcac ccctggcagc
     1081 tgccagtcaa cccaacagcc ttgcagatgt gggtggcctc ctggaaccca ggatggctgc
     1141 tggaggtctc cctggcagtg ttttcgggat gcccagccag gttcctgccc tacagtcggc
     1201 tgtgccaggg gttggcggca gcacagggct cccctttgga gccttcacca atcccttcac
     1261 cacccctgcc caaccccagc tgccttccac caacccattc cagcccaatg gtatagcctc
     1321 agggcctggc tacgggatgg gcagtgttca gcctggcctt ctccagccag cgccaccctc
     1381 cggagccttt gccagtacct tccctgcccc ggtgttcccc acacaggctg gactggtgga
     1441 acagcagaat ggttcttcct ttggcgatct ggggacctcc aagctagggc agaggccact
     1501 gagccagccg gctgggatct ccaccaatcc tttcatgact ggatcctcgg cgtttgcctc
     1561 caaacctcca accacaaacc cattcttgta gcactgtgtc attgggggag gaaggtgctc
     1621 tcccctactt ggggtgtggg ggatgacgtc tacttctgct tcccccctcg gagccctggt
     1681 gaccatttgc cgatggagca tctctgtggg tctgaggctg gggtttgcgc ctggtttgct
     1741 gggcttacag atctgggaac agggaggttt ggaagcatag cttgaggctt gcagatgaat
     1801 cagactctag cctccccatc tgccgcccag gggcttcctt ttcctctcca ggaaggagcc
     1861 cggaaggagc aaagataccc tcaccaggag gctccacagt ggtgtattct tgtcagatca
     1921 ttaagtacga aggcagcctt caatcctgtc cctcgtggac tgtagggaga gaagttaggc
     1981 acagccccag cagcagcctt cccccctggg ggagcagctt ctccacacac aaccttccaa
     2041 agctgccgcc acagtcctcc ctgacagaag ggaagcggga atgtagggta aagatgaggt
     2101 ctggtgttga aagccaccag gcagccctgg gagtgtggcg cttctggcgt ccagtacttt
     2161 tgttttccag gctcagttct tcctagctgt ccccacatcc tggccggcag ggtaggggag
     2221 actatgcttg cccgcctcct gtcaagcact ttagttagcc ctgtcatgtt tggataccag
     2281 tgttttatat ttataaatag agaattttct aatatagcct attatataca taaatatata
     2341 tatatatatg cacacacata tgtaaacagg taaaccccgc cagccattct gtttttccca
     2401 gacaaccctt taacttgggg gatggagcgt gggaggcttt ggcacaggcc tgtagtccta
     2461 gaacttgggg gacttgggga ggaggatcac aagttcaaga ctaacctgga caatttggag
     2521 atcctgtctc aaaggaaaag gacagaaagt tttaaaaaag gcttcggtgg tagtgcagtg
     2581 gtagaccacc tgcatagact cctcctgggg acttgaagaa tggggtagct catgcccgtg
     2641 tctgtataat caaacctggg gccccagggc tccagggagg acaaccaagt atcctgatgc
     2701 tttccagacc gccgagtacc ccagagcaaa gcctaggctg tccagtgaaa agtctatgat
     2761 cggccgggga gtttggtttg tttctttttc ttctttccac attcctccct ctgctcccaa
     2821 atatccgcac caaagcttgt ttggaggcaa tgttggaaaa gattgcgttt gaaaggatta
     2881 aaaaaaaaaa aaaaa
//
