LOCUS       NM_001305127            3749 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus aftiphilin (Aftph), mRNA.
ACCESSION   NM_001305127 XM_001055784 XM_223651
VERSION     NM_001305127.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3749)
  AUTHORS   Hirst,J., Borner,G.H., Harbour,M. and Robinson,M.S.
  TITLE     The aftiphilin/p200/gamma-synergin complex
  JOURNAL   Mol Biol Cell 16 (5), 2554-2565 (2005)
   PUBMED   15758025
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On or before Feb 25, 2015 this sequence version replaced
            XM_223651.8, XM_001055784.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643291.36173.1,
                                           SRR26643286.39409.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-22                JAXUCZ010000014.1  99126706-99126727   c
            23-1980             JAXUCZ010000014.1  99109317-99111274   c
            1981-2132           JAXUCZ010000014.1  99097159-99097310   c
            2133-2259           JAXUCZ010000014.1  99094118-99094244   c
            2260-2316           JAXUCZ010000014.1  99093416-99093472   c
            2317-2439           JAXUCZ010000014.1  99089075-99089197   c
            2440-2500           JAXUCZ010000014.1  99084637-99084697   c
            2501-2624           JAXUCZ010000014.1  99079020-99079143   c
            2625-3749           JAXUCZ010000014.1  99072761-99073885   c
FEATURES             Location/Qualifiers
     source          1..3749
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q22"
     gene            1..3749
                     /gene="Aftph"
                     /gene_synonym="RGD1311920"
                     /note="aftiphilin"
                     /db_xref="GeneID:305544"
                     /db_xref="RGD:1311920"
     exon            1..22
                     /gene="Aftph"
                     /gene_synonym="RGD1311920"
                     /inference="alignment:Splign:2.1.0"
     exon            23..1980
                     /gene="Aftph"
                     /gene_synonym="RGD1311920"
                     /inference="alignment:Splign:2.1.0"
     CDS             55..2772
                     /gene="Aftph"
                     /gene_synonym="RGD1311920"
                     /codon_start=1
                     /product="aftiphilin"
                     /protein_id="NP_001292056.1"
                     /db_xref="GeneID:305544"
                     /db_xref="RGD:1311920"
                     /translation="MEPDVIRMYSSSPPPLDNGAEDDDEDEFGEFGGFSEVSPSGVGF
                     VDFDTPDYTRSKEDFVPSNHFMPIDEYSENVDSLTSLKSIQNGKDKDITAELPTPSKG
                     QSDVVLSATSKAMVPSKALDTPLCGRESLGGVDKGVMQGPSTGQLPSFSPADFRTDTN
                     IVHQTTQLESCNGEKPACLEVLTNGFAGVETANPQGTEDLDSVADSKGSRPLSTSCGT
                     ECILESAASPATEFADFSTFSQTERTQLEELECAVVNDGDALTIQGNSKSHRVKELNC
                     MKEVTLGGSFADTGDTEREHQVCVSDFHAIADRGLSVEKQDLQTLQQDEFLNSRIQSE
                     AWSLVDSNENSEAIRRERCKTEENDFFVAKCADLSMDSIKTSDVNEIGSSKEENRKLT
                     NPKSPNPDPTEESVLDDSAASMKNGDSFNGFVTCHDTNEDDFGDFGTASGTTPPFVTS
                     TQDSMSDVTFEDSSEHFLHFSEPGDDFGEFEDTNAISCPEEMIFTESDLRQTSDGLSE
                     ECPLEGESGGKDSEPDSKLKNGQDGEFGDFDSVPNTQGSAFQDSDDFADFSSAGPSQA
                     VDWNAFEDEQKDSCSWAAFGDQQATESHHRKEVWQSHRTDGTLDTLGTPRTHSVSSAA
                     SKGAVASGHLQEPATSAQTALLNRLERIFEACFPSVFVPDAEEEVTSLKHLLETNYSP
                     VKAREALAECGELRDVWAELQDIHDAHGLRYQWGGSHSNKKLLCSLGIDTRNILFTGN
                     KKQPVIVPMYAAGLGMLEPTKEPLKPLSAAEKIASIGQTTIMTPEMNTCTSDPFQESL
                     PPVQFDWSSSGLTNPLDGVDPELYELTTAKLETSTSSLRVTDAFAKLMSTVEKTSTST
                     RKPKREEHLSEEAVKVIVSLPDLTFMHAKVLMFPATLTPSTSSQGQADA"
     exon            1981..2132
                     /gene="Aftph"
                     /gene_synonym="RGD1311920"
                     /inference="alignment:Splign:2.1.0"
     exon            2133..2259
                     /gene="Aftph"
                     /gene_synonym="RGD1311920"
                     /inference="alignment:Splign:2.1.0"
     exon            2260..2316
                     /gene="Aftph"
                     /gene_synonym="RGD1311920"
                     /inference="alignment:Splign:2.1.0"
     exon            2317..2439
                     /gene="Aftph"
                     /gene_synonym="RGD1311920"
                     /inference="alignment:Splign:2.1.0"
     exon            2440..2500
                     /gene="Aftph"
                     /gene_synonym="RGD1311920"
                     /inference="alignment:Splign:2.1.0"
     exon            2501..2624
                     /gene="Aftph"
                     /gene_synonym="RGD1311920"
                     /inference="alignment:Splign:2.1.0"
     exon            2625..3749
                     /gene="Aftph"
                     /gene_synonym="RGD1311920"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggccgccc gggacgagcc aggcatacat taatcactgg aaggccgctg aataatggag
       61 ccagacgtca tcagaatgta ctcgtcgtcc cccccacctc tggacaacgg agcagaggac
      121 gacgacgagg atgagtttgg ggaatttggt ggattttcag aagtcagccc ttctggtgta
      181 gggtttgttg attttgacac gccagattat actcgttcca aggaagactt tgtaccttca
      241 aaccatttta tgccaattga tgaatattca gaaaacgtag acagccttac aagccttaag
      301 tccattcaga acggtaagga taaggacatc actgctgaac ttcccactcc ttcgaaaggt
      361 cagtctgatg ttgtactttc tgccaccagc aaagcaatgg ttccatctaa agctttagac
      421 actcccctct gtggcaggga aagcctggga ggtgtagata aaggagtgat gcagggacca
      481 agcaccgggc agctcccaag tttctctcca gcagacttta gaactgatac aaacattgtc
      541 caccaaacca ctcagttaga gagctgcaac ggtgagaagc ctgcctgtct ggaagttctc
      601 acaaacgggt ttgcaggtgt ggaaactgca aatcctcagg ggacagagga cctggacagt
      661 gtggcagatt caaagggatc gaggcctctt agcacctctt gtggcaccga gtgcatttta
      721 gagtctgcag ctagtcctgc tacggaattt gcagattttt ctacattttc ccaaacagaa
      781 aggacacaac tagaagaact agaatgtgca gttgtaaatg atggtgatgc actgaccatt
      841 cagggaaaca gcaaaagcca cagagtcaag gagctgaatt gtatgaaaga agtgactttg
      901 ggtgggagct ttgcggatac aggggacact gaaagagaac atcaggtctg cgtctcagac
      961 ttccatgcca tagctgacag agggctcagt gttgaaaaac aagaccttca aacactgcaa
     1021 caggatgagt ttctaaattc aaggattcag tctgaggctt ggagcttggt agactcaaat
     1081 gaaaattcag aagccattag gagagaacgg tgtaaaactg aggaaaatga cttctttgtc
     1141 gctaagtgtg ctgacttatc catggattct attaaaactt ctgatgttaa tgaaattggt
     1201 tcttccaaag aagaaaatag aaagttgact aaccccaaaa gcccaaaccc tgatcccact
     1261 gaagaaagtg ttttggatga ttctgctgca agcatgaaaa atggtgacag ttttaacggc
     1321 tttgtgactt gccacgatac caatgaggat gattttggtg actttggtac agccagtggc
     1381 accactccac cctttgttac tagtactcaa gattcaatga gtgacgtcac ttttgaagac
     1441 tcctcagagc attttctaca ttttagtgaa ccgggtgatg attttggaga atttgaggat
     1501 acaaatgcca tttcttgtcc agaggaaatg atatttactg agtccgacct aagacagact
     1561 tctgatggct tatcagagga atgtccattg gaaggagagt ctggtggaaa agacagtgaa
     1621 cccgactcaa aactgaaaaa tggtcaagac ggtgaatttg gagattttga ttctgtgcca
     1681 aatactcaag ggagtgcttt tcaagactcg gatgattttg cagacttcag ttcagcaggt
     1741 cctagccaag ctgtcgactg gaatgctttt gaggatgaac agaaagacag ttgttcttgg
     1801 gctgcctttg gggatcagca ggcaactgag tctcatcatc ggaaggaagt ctggcagtca
     1861 cataggacag atggaactct ggacaccctg gggaccccta ggacgcacag cgtctcttca
     1921 gcagcttcca aaggagcagt tgctagtggc catctgcagg agccagccac ttcagctcag
     1981 acagctttac tgaaccggtt ggagaggatt ttcgaagcct gttttccttc tgtattcgtc
     2041 cctgatgccg aagaggaagt tacttccctg aagcacttgc tggagacaaa ctactcacca
     2101 gtaaaagcaa gagaggcctt agctgagtgt ggtgagctgc gggatgtgtg ggccgaactg
     2161 caggacattc atgatgcaca tggtctgcgg taccagtggg gcggctcaca tagcaacaag
     2221 aagcttctgt gctccttggg aatagacact cgaaacattc tgttcactgg caataagaag
     2281 caacctgtta tagtgcccat gtacgcagca ggattgggca tgttagagcc caccaaggag
     2341 ccactgaaac cactgtcagc tgcagaaaaa attgcttcta ttggtcagac aaccattatg
     2401 acaccagaaa tgaacacgtg tacatctgat ccattccagg agtctctccc acctgtccag
     2461 tttgactgga gtagcagtgg ccttactaac cctttagatg gtgtggatcc agagttgtat
     2521 gaattaacaa ctgctaagct ggagacctcc acctcaagcc tcagagtgac tgacgcattt
     2581 gcgaagctca tgtctacagt ggaaaagacg agcacgtcga ccaggaaacc aaaaagggag
     2641 gagcacctaa gcgaggaggc cgtgaaggtg atcgtcagcc ttccggacct gaccttcatg
     2701 cacgccaagg tgctgatgtt cccggccacg ctcacgccgt ccacgagctc tcaaggacaa
     2761 gcagatgcgt agctgctcgt gtcggaggat ctgaaattct ctttcctttc ctccagccct
     2821 tcccatcatc aaaggcatat cgtctgtaat taaaaataaa aacatgcaag ctcagctgat
     2881 tggttggtaa gccacactag aaaggtatac atagtaatgt atatttattt acatactgaa
     2941 gtcctaaatt tatatagaaa aatgtaaata attggggatg aacatttttg aagatttatt
     3001 cttttgtgtt gctggggtgt atacatttat gtctttgtga aatacactgg tggtgtcctt
     3061 cttaaaaact tttgaaataa aaagagaaaa ttaaaacctc aaatctccac tgtctgaaat
     3121 ccccttcagt cttttccctt tgcactgaca gctcttaatt tccctgtcct atggtctgtt
     3181 gcttttacct gtcacgcaaa agcttcagaa ttcttgtttg gttttcagtt ttgtgtgatg
     3241 ggtttgtttc agacctggct tttgttctgt ttcccgggct ttgttgtcgt ctttttgtca
     3301 ggtgtattgc tgtgtgtgac cttctcagag gtcactccac tgatgctcgc tggttgtggg
     3361 ccgggatcac tgtcaggacg tgactggagg cttgacagag aatgtgcctg ttttaattgg
     3421 tgtgatttgg agaaggacca aattatatga atgtcttaaa atgaaatttg tagagatctt
     3481 tctgttctgt cataccacta ttttttgagg atttttgcac agtgtaaaat gacataatcc
     3541 tagattgcta tggtttaggc tgtatataca gtaaaaaaac aaaaaaacaa gctgtgggtt
     3601 ttaaacgttt ggggcaattc ctatggaagc aggagagaca tgtagaagaa cctctaacgg
     3661 gttaatatgc atgcccaagg gttttgagat ttcagtgtgt aaatttcctt ttagcttata
     3721 caataataaa ataatttaaa agaaattta
//
