LOCUS       XM_039091614            1370 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus alpha-fetoprotein (Afp), transcript
            variant X1, mRNA.
ACCESSION   XM_039091614
VERSION     XM_039091614.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091614.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1370
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1370
                     /gene="Afp"
                     /note="alpha-fetoprotein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 62 ESTs, 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:24177"
                     /db_xref="RGD:2065"
     CDS             262..1239
                     /gene="Afp"
                     /codon_start=1
                     /product="alpha-fetoprotein isoform X1"
                     /protein_id="XP_038947542.1"
                     /db_xref="GeneID:24177"
                     /db_xref="RGD:2065"
                     /translation="MTHICSQQEILSSKTAECCKLPTIELGYCIIHAENGDKPEGLTL
                     NPSEFLGDRNFAQFSSEEKLLFMASFLHEYSRNHPNLPVSVILKTAKSYQEILEKCSQ
                     SETPSKCQDNMEEELQKHIQESQALAKQSCDLYQKLGPYYLQNLFLIGYTRKAPQLTS
                     AELIDLTGKMVSIASMCCQLSEEKRSACGEGLADIYIGHLCLRHEANPVNSGINHCCS
                     SSYSNRRLCITSFLRDETYVPPPFSEDKFIFHKDLCQAQGRALQTMKQELLINLVKQK
                     PEMTEEQHAAVTADFSGLLEKCCKDQDQEACFAKEGPKLISKTREALGV"
ORIGIN      
        1 gaaagctagc aatgttagca cgccagccgc gaatattgca cattggaaag tttcagtaac
       61 aataaaaagc tgctgtccgg tttaaggaac acatttcctt attttcttga agacttttac
      121 taaaatagac ggtaggtctt tagatgaaaa ctgtgcaaag cggactcgaa caagtcggaa
      181 agcaatgagg aaaagcaagg atgagcaaaa tagaaagaga aagataggta aaagcagcaa
      241 aggagagatg aggaaagcgt catgacacat atatgttctc aacaagaaat tctgtcgagc
      301 aaaacagcag agtgctgcaa actacccacc atcgagctcg gctattgcat aattcatgcc
      361 gaaaatggcg acaaaccgga aggtttaact ctgaacccaa gcgagttttt gggagacaga
      421 aattttgccc agttttcttc agaggaaaaa ctcctgttta tggcaagctt tcttcatgaa
      481 tattcaagaa atcaccccaa ccttcctgtc tcagtcattc taaaaactgc taagtcatac
      541 caggaaattt tggagaagtg ctcccagtct gaaacgccat cgaaatgcca ggacaatatg
      601 gaagaagaat tgcaaaaaca catccaggag agccaggcac tggccaaaca aagttgtgat
      661 ctctaccaga agttaggacc ctactactta caaaatctgt tcctcattgg ctacacgcgg
      721 aaggctcctc agctgacctc agcagagctg atagacctga cagggaagat ggtgagcatt
      781 gcctcaatgt gctgccagct cagtgaggag aaacggtccg cctgcggtga gggactggcc
      841 gacatttaca ttggacactt gtgtttaaga catgaggcaa accctgtgaa ctccggtatc
      901 aaccactgct gcagttcctc gtattccaac aggaggctct gcatcaccag ctttctgagg
      961 gacgaaacct acgtccctcc accattctct gaagacaaat tcatcttcca caaggatctg
     1021 tgccaagctc agggccgagc cctacagacc atgaaacaag agcttctcat taacctggtg
     1081 aaacaaaagc ctgaaatgac agaggagcag cacgcggctg tcactgctga tttctctggc
     1141 ctcttggaga agtgctgcaa agaccaggat caggaagcct gtttcgcaaa agagggtcca
     1201 aagttgattt ccaaaactcg tgaggctttg ggggtttaaa catctccagg aggaagaaag
     1261 gacaaaaaaa tgtgtcgacg ctttggtgtg agcttttcgg tttgatggta actggtggag
     1321 acttccatgt gggatttcta tgccttagga ataaagactt ttcaactgtt
//
