LOCUS       NM_001109647            2480 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus AFG2 AAA ATPase homolog B (Afg2b), mRNA.
ACCESSION   NM_001109647 XM_001073008 XM_001073038 XM_001073066 XM_001073099
VERSION     NM_001109647.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2480)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001073038.1, XM_001073099.1, XM_001073008.1, XM_001073066.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.15646.1,
                                           SRR26643294.14901.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1130              JAXUCZ010000003.1  130148342-130149471
            1131-1316           JAXUCZ010000003.1  130150225-130150410
            1317-1475           JAXUCZ010000003.1  130153717-130153875
            1476-1685           JAXUCZ010000003.1  130156288-130156497
            1686-1878           JAXUCZ010000003.1  130157237-130157429
            1879-2009           JAXUCZ010000003.1  130159102-130159232
            2010-2135           JAXUCZ010000003.1  130160189-130160314
            2136-2410           JAXUCZ010000003.1  130160978-130161252
            2411-2480           JAXUCZ010000003.1  130161272-130161341
FEATURES             Location/Qualifiers
     source          1..2480
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q35"
     gene            1..2480
                     /gene="Afg2b"
                     /gene_synonym="Spata5l1"
                     /note="AFG2 AAA ATPase homolog B"
                     /db_xref="GeneID:691729"
                     /db_xref="RGD:1595990"
     exon            1..1130
                     /gene="Afg2b"
                     /gene_synonym="Spata5l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             57..2300
                     /gene="Afg2b"
                     /gene_synonym="Spata5l1"
                     /EC_number="3.6.4.10"
                     /note="spermatogenesis-associated protein 5-like protein
                     1; ribosome biogenesis protein SPATA5L1; spermatogenesis
                     associated 5-like 1"
                     /codon_start=1
                     /product="ATPase family gene 2 protein homolog B"
                     /protein_id="NP_001103117.1"
                     /db_xref="GeneID:691729"
                     /db_xref="RGD:1595990"
                     /translation="MAPDSGPFPDGQFLKLLPVDPRDRGTQRCRLGPAAFRSLGVRLG
                     SPMRISLPAGGCCLCTAWPRRDGADGFVQLDLQCASPGAAAAAGRISMDRLQPVSCPP
                     LRRLEVWPVLRPQAGAPSSDAVLEVSQELLRNRPVSRGHVVATPPGIPGPVAALHVVS
                     GTPDPEPAGRVTPHTRITLSDKPPPQVEPPGEVTLGGLSETADSLRELLRLPLCYPLA
                     LAALGLAVPRGVLLAGPPGVGKTQLVRAVAREAGAELLAVSAPALQGTRPGETEENVR
                     RVFQRAQELASRGPSLLFLDEVDALCPRRGGPQRAPESRVVAQVLTLLDGIHGDREVV
                     VVGATNRPDELDPALRRPGRFDREVIIGTPTLKQREAILGVITSKMPISSHIDLGLLA
                     EMTVGYVGADLTALCREAATCALLKNEKNQNNPKIEETDFLEAFKKVQPSSFRSSIGL
                     TDIRPVGWEQIGGLEDVKLKLKQCVEWPLKFPQEFARMGLTQPKGLLLYGPPGCAKTT
                     LVRALATSCHCSFVSVCGADLFSPFVGDSEKVLSQVFRQARANTPALVFLDEIDSVLG
                     SRSVGSSGCDARERVLSVLLNELDGVGVRTVERRGSKASQQECQEILSRSVMIVVATN
                     RPDVLDDALLRPGRLDKMVYVPPPDREGRLSILKVCTNNMPIGLNVSLENLAAETCYF
                     SGADLRNLCKEAALFALQENGLEATTVEQEHFTEALKTVKPSLTLKDLTFYENLFKKE
                     LSNLEDH"
     exon            1131..1316
                     /gene="Afg2b"
                     /gene_synonym="Spata5l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1317..1475
                     /gene="Afg2b"
                     /gene_synonym="Spata5l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1476..1685
                     /gene="Afg2b"
                     /gene_synonym="Spata5l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1686..1878
                     /gene="Afg2b"
                     /gene_synonym="Spata5l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1879..2009
                     /gene="Afg2b"
                     /gene_synonym="Spata5l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2010..2135
                     /gene="Afg2b"
                     /gene_synonym="Spata5l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2136..2480
                     /gene="Afg2b"
                     /gene_synonym="Spata5l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 catccggcag ccgggtgaat tgctgccggg ctctccctgg tgtggttctc ctagtcatgg
       61 ctccggactc cgggcccttc cccgacggac aatttttgaa gctgctgcct gtggatcccc
      121 gggaccgggg cacccagcgc tgccgcctag gaccggccgc cttccgcagc ctgggcgtgc
      181 gcctgggctc gccgatgagg atctcgttgc ccgccggggg ctgctgcctc tgcacagctt
      241 ggccacggcg cgacggggcg gacggctttg tgcagttaga cttgcagtgc gctagccccg
      301 gagccgcggc agctgcgggg aggatcagta tggaccgctt gcaaccggtg tcctgtccgc
      361 ccctgcggcg cctagaggtg tggcccgtgc tgcggccgca ggcgggagcc ccgagttccg
      421 acgcggtgct ggaggtatcg caggagctgc tgcgcaaccg gccggtgtcg cgaggacacg
      481 tggtggccac ccctcccggt atcccgggcc ctgtagcagc tctgcacgtg gtgagcggga
      541 caccggaccc agagcccgcc gggcgggtca caccgcacac ccgcatcacg ctcagcgaca
      601 aacctccgcc acaggtcgag cctccggggg aggtgaccct tgggggcctg tcggagacgg
      661 ccgactccct aagggagctg ctccgcctgc cgctgtgtta tccgctcgcc ttagccgcac
      721 tggggctggc ggtgccccgc ggggtgctcc tggcgggacc cccgggagtg ggcaagaccc
      781 agttagtgcg ggccgtggcg cgagaggcgg gcgccgagct gctggcggtg agcgccccgg
      841 cgctgcaggg cactcggccc ggagagaccg aggagaatgt gcggcgcgtc ttccagcgcg
      901 cccaggagct ggccagccgc gggcccagcc tcctcttcct ggacgaggtg gacgccctgt
      961 gtccccggag aggcggcccc cagcgagctc ccgagagccg cgtggtggcc caggtgttga
     1021 cgctgctgga cggtatccac ggggaccggg aggttgtggt cgtgggagcc accaaccggc
     1081 cagacgagtt agacccagcg cttcgcaggc cggggaggtt tgacagagag gtgatcattg
     1141 gaactcccac acttaaacag agagaggcaa ttctgggagt gattacttca aagatgccca
     1201 tctccagtca tatcgattta ggcctgctgg cagaaatgac agttggctat gtcggtgctg
     1261 acctgacagc actctgtagg gaggctgcca cgtgtgctct tctcaagaat gaaaagaacc
     1321 aaaacaatcc taaaattgag gaaacagatt ttcttgaagc ttttaaaaag gttcagccct
     1381 catcatttcg gagttccatc ggactgacag acatcaggcc tgttggctgg gagcagatag
     1441 ggggacttga agatgtgaag ctgaagttaa agcagtgtgt tgagtggcct ctgaagttcc
     1501 ctcaggagtt tgctaggatg ggtctgacac agccaaaggg ccttctcctg tatggtcccc
     1561 ctggatgtgc caaaaccact ctggtgaggg ccctggccac aagctgccac tgctccttcg
     1621 tgtcagtatg cggggctgac ctcttctctc cttttgttgg agactcagaa aaagtcttgt
     1681 ctcaggtatt tcgacaagca agagccaata ccccagcgct tgtgtttttg gatgaaattg
     1741 actcagtctt ggggtctcgc tcagtcggct cctcgggatg tgatgctcgg gagagagttc
     1801 tttcagttct gctgaacgag ctcgatggtg tgggagttag gacggtagag agaagaggga
     1861 gtaaagcaag ccaacaggag tgtcaagaaa ttcttagtcg gagtgtcatg attgttgtgg
     1921 cgacaaacag gcctgatgtg ttagacgatg ccttgttacg acctggcaga ttagataaga
     1981 tggtctatgt cccccctcct gatcgagagg gcaggctttc tattttaaaa gtctgtacaa
     2041 acaacatgcc aatagggctc aatgtttctc tagagaacct ggcagcagaa acctgttatt
     2101 tctctggagc tgatctgaga aacctctgca aagaagctgc tctgtttgct ctgcaagaaa
     2161 atggactgga agcgaccaca gtggaacagg agcacttcac agaagcactc aagactgtga
     2221 agccgtcctt aactctgaaa gacctgactt tctacgaaaa cttatttaaa aaagaacttt
     2281 ccaacttgga agatcattaa atttttattt tattcagttt tttatataaa gtggtttgca
     2341 acttcacgct ttcatgagag ggggaaggga gaggtagggg actggagaga gagagagaga
     2401 gagagagaga agactgagac actaagaact tgcctgataa ggaccatttc acttctgaaa
     2461 gatatattaa acactatagt
//
