LOCUS       XM_017602424            8393 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus ALF transcription elongation factor 2
            (Aff2), transcript variant X1, mRNA.
ACCESSION   XM_017602424
VERSION     XM_017602424.2
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086039) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017602424.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8393
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..8393
                     /gene="Aff2"
                     /gene_synonym="RGD1565592"
                     /note="ALF transcription elongation factor 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 45 long SRA reads, 2 Proteins"
                     /db_xref="GeneID:293922"
                     /db_xref="RGD:1565592"
     CDS             312..4175
                     /gene="Aff2"
                     /gene_synonym="RGD1565592"
                     /codon_start=1
                     /product="AF4/FMR2 family member 2 isoform X1"
                     /protein_id="XP_017457913.1"
                     /db_xref="GeneID:293922"
                     /db_xref="RGD:1565592"
                     /translation="MDLFDFFRDWDLEQQCHYEQDRSALKKREWERRSQEVQQEEDLF
                     SSGFDLFGEPYKVAEYTNKGDALANRVQNTLGSYDEMKDLLSNHSSQNHLVGIPKNSV
                     PQTPISKSEASLYPEQKNRMIPSHQENTHSSVPMPPPSVVILNSTLINSNRKSKSEWP
                     RDNHNTSPGQACQASSQPNKIQTSTQDPPQTRLEDFFVYPAEQPQIGTAEKSNPSAKE
                     DNNPNSGGEDAFKEIFQSNSPEESEFTVQAPGSPLVASSLLAPSSGLSVPTFPPGLYC
                     KTSMGQQKPTAYVRPMDGQDQATDISPTLKPSIEFENSFGNLSFGSLLDGKPSAASTK
                     NKLPKFTILQTSEVSLTSEPSCVEEILRESQHLTPGFTLQKWSDPSSRASTKSVPLKS
                     MLEDDLKLSSDEDDLEPVKTLTTQCTANELYQAVEKAKPKNNPVNSLLATPQPTSAAQ
                     ASVGSGSSSESESSSESDSDTESSTTDSESNEAPRVATPEPEPPSTNKWQLDKWLNKV
                     TSQNKSFICGQNETPTETISLPPPIIQPVEVQVKVKPNPSQSVAVPKERPLLSLIREK
                     ARPRPTQKTPETKALKHKLSTSVDSVSQRTIGKKQPKKVEKNTSFEEFIWPKPNTTSS
                     TPKEKESVELPDPPRSRNKATAHKPVPRKEPRPHVPLATEKKKYRGPGKIVPKSREFI
                     ETDSSTSDSSTDQEETLQIKVLPPCIAPGGNTSKSKETSNASLTLSTLTSSNSNNNSN
                     NLSTSNEETAFSPPPAMQTELLTPVHDHEIPKNLWVKIDLDLLSRVPGQNSVPAAPAK
                     TDHHKETASKPKRQTAAITVEKPAPKGKRKHKPAEAAEKIPEKKQRLEDTTICLLPPC
                     ISPAPPHKPPNTRENSSRRANRKREEKLFPPALSPLAEDPPRRRNVSGNNGFFSQDKN
                     ISMAGQITSTKPKRSEGKFCATFKGISISEGDAPKKPASATVTVANTAIATATATATA
                     PAIVTATVTATATTTATATTTTTTTTISSITPTITSGLMDSSHLEMTSWAALPLLASS
                     STNVRRPKLTFDDSVHNADFYMQEAKKLKHKADALFEKFGKAVNYADAALSFTECGNA
                     MERDPLEAKSPYTMYSETVELLRYAMRLKNFASPLASDGDKKLAVLCYRCLSLLYLRM
                     FKLKKDHAMKYSRSLMEYFKQNASKVPQIPSPWVGNGKNTPSPVSLNNVSPINSMGNC
                     NNGPVTIPQRIHHMAASHVNITSNVLRGYEHWDMADKLTRDNKEFFGDLDTLMGPLTQ
                     HSSMTNLVRYVRQGLCWLRIDAHLL"
     polyA_site      8393
                     /gene="Aff2"
                     /gene_synonym="RGD1565592"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cggccgccac cgcagcccgg acgccctggg cacgcgggca gccgcggagc gagtggacca
       61 gagcgggcgg tcaggctctt gcctgcccgg tgccatcgct tccgccgccg ccgccgccac
      121 tgctccggag cgcaggacca ggtacccggg gctcccgccg ctgccgctaa tgcggcccca
      181 gcacttttaa ccgggcagga gggccagaga gccgcgccgc cgaccgcagc cagagagccg
      241 cgcagctcag agccgcgccg acaggcagcg agcagggaca gacggccgcc agccgccgcc
      301 gccccgccgc tatggatcta ttcgactttt tcagggattg ggacttggag cagcagtgtc
      361 actatgaaca agaccgtagt gcacttaaaa aaagggaatg ggaacgaagg agtcaagaag
      421 ttcaacaaga agaagatctt ttttcttcag gctttgatct ttttggggag ccctacaagg
      481 tagctgaata tacaaacaaa ggggacgccc ttgccaaccg agtccagaac actcttggaa
      541 gttatgatga aatgaaggat ctgctctcta accattccag ccagaatcat ctggtgggca
      601 tcccaaagaa ttcggtgccc caaactccca tcagcaaaag tgaagcaagc ttgtatccag
      661 aacaaaagaa tcggatgatc ccatctcacc aggagaatac ccactcctca gtaccaatgc
      721 ctccaccttc agtcgtgata ctcaattcca cgctaataaa cagcaacaga aaatcaaaat
      781 ctgagtggcc acgagataat cataacacta gccctggaca agcatgccag gctagcagtc
      841 aaccaaacaa gatacagaca tccacacaag acccacctca aacccgcctg gaagacttct
      901 ttgtctaccc agctgagcaa cctcaaattg gtacagctga aaaatctaac ccatctgcaa
      961 aggaagataa taaccctaat tcaggtggag aagatgcttt caaagaaatc tttcagtcta
     1021 attcaccaga agaatcagaa tttacagtcc aagctcctgg gtctccccta gttgcctcat
     1081 ctttattagc tcccagcagt ggcctttcag tcccaacctt cccaccaggg ctttactgca
     1141 aaacaagcat gggacaacaa aaaccaactg catatgtaag gcccatggat gggcaggacc
     1201 aggcaactga catctctccg acactgaagc cttccattga atttgagaac agttttggaa
     1261 acctctcttt tggatcactg ttggatggga aacccagtgc agccagtaca aagaacaaac
     1321 tgccaaagtt cacaatcctg caaacaagtg aagtaagcct taccagcgag ccaagctgtg
     1381 ttgaggaaat cttgcgggaa tctcagcatc tgactccagg attcacctta caaaagtgga
     1441 gtgacccaag cagcagagct tcaacaaagt cagtaccact caagtcgatg cttgaggacg
     1501 acctgaagtt gagcagtgat gaagatgacc ttgaacctgt gaagaccttg accacacagt
     1561 gcacagccaa tgagctctac caggctgttg aaaaggcaaa acctaagaat aatcctgtga
     1621 actcactctt ggccacacca cagcctacat ctgcagctca agctagtgtg gggtctggca
     1681 gctccagtga gtcagagagt agctcagaat cagactcaga cactgaaagc agcaccaccg
     1741 acagcgaatc caacgaggct cctagagtgg ctactccaga gcctgagcca ccctcaacca
     1801 acaaatggca gctagacaaa tggctgaaca aagtcacgtc ccagaacaag tcatttattt
     1861 gtggccaaaa tgagacaccc acagagacca tttctctgcc tcctccaata atacaaccag
     1921 tggaggtcca ggtcaaagta aaaccaaacc ctagccaatc tgtggctgta cccaaagaaa
     1981 ggcccctcct cagtcttatt agggagaaag ctcgaccaag gcctacacag aaaactccag
     2041 aaacaaaggc cttgaagcat aagttgtcaa catcagttga ctcagtttct caaaggacaa
     2101 ttggaaagaa acaacccaaa aaagttgaga aaaacaccag ctttgaggag tttatctggc
     2161 ccaaaccaaa tactaccagc agtactccca aagaaaaaga aagtgtggag cttcctgacc
     2221 caccacgaag ccgcaacaaa gctactgccc acaaaccagt gcctaggaaa gagccaaggc
     2281 cacatgtccc cctggccact gagaagaaga agtatagagg gcctgggaag attgttccca
     2341 agtcccggga atttattgaa acagattcat ctacatctga ctcaagcaca gatcaggaag
     2401 agaccctgca gatcaaagta ctgccacctt gcattgcacc tggaggtaat acttctaaat
     2461 ccaaggagac ttctaatgcc agcctaacat taagcacctt gaccagcagc aacagcaaca
     2521 acaacagcaa caacttgtcc accagcaatg aggagacagc tttttcacca cctcctgcca
     2581 tgcaaactga gcttttgacc cctgtacacg atcatgagat tccaaaaaac ctctgggtga
     2641 agattgacct tgacttactt tctagagtac ctggccaaaa ttcagtccca gcagcacctg
     2701 caaagacaga ccaccacaag gagactgcct ctaaacccaa gcgacaaact gctgccataa
     2761 ctgtggaaaa accagcccct aagggcaaac gtaagcacaa gccagcagaa gctgcagaga
     2821 aaatccctga gaagaagcaa cgcctggagg acactactat ctgcctgctt cccccttgca
     2881 tctcaccagc cccaccccac aagcctccca acactagaga aaattcatcc aggagagcaa
     2941 acaggaaaag agaagaaaag ctgttccctc ccgcactttc cccactggca gaggaccctc
     3001 cacgtcgcag aaatgtcagt ggcaacaatg ggttcttcag tcaagacaaa aatatctcca
     3061 tggctggaca aatcacctct accaaaccta aaagaagtga aggcaaattc tgtgctactt
     3121 tcaaagggat atccataagt gagggagatg ctccaaaaaa gcctgcctct gccaccgtta
     3181 ctgtcgccaa tacagctatt gccactgcta ctgccactgc cactgctcct gccattgtca
     3241 ctgccactgt cacagctact gccaccacca ctgccacagc caccaccaca acaaccacca
     3301 ctactatttc tagcatcacc cctacaatca cttctggcct tatggatagc agtcacctgg
     3361 agatgacatc ctgggcagcc ctgcccctcc tggccagcag tagcaccaat gtccggagac
     3421 ccaagctcac ttttgatgac tctgttcaca atgctgattt ttacatgcaa gaggctaaga
     3481 agctgaaaca caaagctgat gcactgtttg agaaatttgg caaagctgtg aactatgcag
     3541 acgcagcctt gtccttcact gagtgtggca atgccatgga acgtgatcct ctggaagcga
     3601 agtccccata taccatgtat tctgagactg tggagctcct caggtacgca atgagactga
     3661 agaactttgc aagcccctta gcttctgatg gggacaaaaa gctagcagta ttatgctacc
     3721 gatgcttgtc acttctctac ttgaggatgt ttaagctgaa gaaggaccat gctatgaagt
     3781 attccagatc actgatggaa tattttaagc aaaatgcttc aaaagttcct cagatcccgt
     3841 ctccttgggt aggcaacgga aagaataccc catccccagt gtctctcaac aatgtctctc
     3901 ccatcaactc aatggggaat tgtaacaatg gcccagtcac cattccccag cgcatccacc
     3961 acatggctgc tagccatgtg aatattacca gtaatgtgct tcggggctat gaacactggg
     4021 atatggctga taagctgaca agagacaata aagagttctt tggtgatctg gatacactga
     4081 tggggcctct gacccagcac agcagcatga ccaatcttgt ccgctatgtt cgccagggac
     4141 tgtgttggct gcgcattgat gctcatttgt tatagtgggc actctcccat ctcacggatc
     4201 agcactcatc cctctacctt taccagtgcc ttgatggtca ctggtggaac tccactcatt
     4261 tggaaaagtt ctctttcatt atgtttgttt ttatgcattt ttgatatctg tgaaaaactg
     4321 aagtcattgt aagtgaacac tacaatgtga gagaagtgta tgttttattt tttaatattt
     4381 gatatgcatt tctcatatct ccttattttt gtgctttatg gaatgaaaat ccctacaata
     4441 ttgagttaag tccacacgat tcaaaacaaa gaatgagaag cacatgtgat gatgacaggc
     4501 ccctgagaac tcaaagaagc atctaacatg catctggaaa agggacctgc agagatctcc
     4561 gcagtagcca ttccccaaac tagactcttg ggtccagaaa agaatgtatc tcagaattca
     4621 ttgttaaaca atttctgtgg ttcccataga ctaaatcttc aggtgagaat ctccattgtc
     4681 aaacccacag atttgatatt ctaaccacgt gataaaatca agggtagcaa gcaaaacaca
     4741 agcctaagaa ttctactctt gaaatgacac acaagactct tttgttaaca tcctattcct
     4801 ggttacctat gcttttctac tattttaatg gtgaggaaga ggagaaaaac ttaattccat
     4861 aactttgcca tcagctgtta taaacaatgt aaaacttaac tcctcacctg agattgtctt
     4921 tgcacaaaac tctcctttac aagatgcaca tcttcatcat caaaatttca cacttagcta
     4981 gacttaagaa atcagactgg actgacagct gtcctcccag aaatccatgc cttggcctca
     5041 ttttcagcca gtaggcaaat ccataacttc atatattttg atagatgtgc atataaaatc
     5101 tgtggaatca aaagtcaagt tatgactttt ttaaattgat aatgcacaat ttatttccca
     5161 gtgtccttgc tatctggact ttctaactat tatccacatt ttttattttt tagatatttt
     5221 tctttcagct ttgcttgatg atttctttcc aaagatcttg gctaaaatac agtcatggtt
     5281 ttttgttaaa gtttacatta gtataagtca tttacacgaa aattccaaag aaaatactaa
     5341 attctgtaag taatacctaa ttttcttttt ataaaatgaa aatcttaggt agtgcttcac
     5401 cctaggatcc ttggaatgaa tcttgaagtt tgggaacagt tcacctaatt tggagcattt
     5461 ccttatgaat tatgactatc tctctttatg attctctaca ttcatcttat ggccctaaaa
     5521 tcaccctgta aataccatct tcagtgttcc acctcaccag aaaatttctc cagctatagt
     5581 aaacactatg cattcattag ttacttgtaa ttgcctgctg gcatataatt ctgtataacc
     5641 tttaatctgc tgagttattg aattctattc actgagttat gaccagataa ataatagata
     5701 tgtacatgaa aattgcaaac ttgtatgatt tctaaagcaa gtcatgcagg tctgtgataa
     5761 gaacttcagg caatcactct gtattctcac tgtaaaagtt aggtacttcc ctagttgcaa
     5821 aagagccaga tttgagttct gctctgatca tatttgagtt taaggctctt tgtggtataa
     5881 taaagttaag gaagttgcat tccaatggct aaagccatgc tgtttctatg gctgatgggt
     5941 gtaccccagc agctgaagcc tgcacttttt atgctcccaa tgtggttgag ctttaaacct
     6001 acagtttcag caacaacact tacttatgca cacacacaca cacacacaca cacacacaca
     6061 caaatgaaat ctaaatcttc tctgtgcctc ttaaatgagg aaaataaaaa tatgaaagac
     6121 agaacacccc aaatgggtgt cacatgaaaa taaaatgagc tgatgacttt gcagtaactc
     6181 aagttctctg ttttccatgg caaaccagga agctctcctg gcttgacttg taaattaagc
     6241 ctactccaca tcctaggcct tcatagattt acacacagat tatttttgaa attaagtctc
     6301 caagaactag aaattagagt ggtaggagca gttttccata gaaacaagca tatttcacat
     6361 agatgaaaga cttgttactc tagtttcagt aactcatctt ttcttctaat atagaacaag
     6421 gaggcaagag aatactccat catctctggt aactgattgt aaagtgccat gtcagcagta
     6481 tgattatcaa atgtgacagg agagttctag ttcatcacct gattatttag tagacctgcc
     6541 tgtaacatag cttaaaaaca agttaaacat ggaggatgaa ttgattacct tcacatccct
     6601 ggagatgagg agtctttggt ctcctggtta aatttgtttc tgttttctag gcactctagt
     6661 catcatgcta aagatggtga tgtgcattat gggtgttcag ctatctgcag gattgaaaga
     6721 tttaagatgt tgtcaaggga atctcttcag agtaccagtt aagtgggagg gatatgagac
     6781 ctaaggatgg cagtgaaaga ttgtgcctct ggatgttggt ggaggcttgg tgagtcacat
     6841 ctgaacaagt ttatgaaggt gtggtgatgg gcagagtaat aggcagccta cccccaaccc
     6901 ccaaacaaat acaagaaaca accacagccc tacaacatga cccaggtagg gccagcatta
     6961 tgccttcatt tatcacacaa gctccaacca cagagagtct gacaagtttg tgttatgatg
     7021 ttggcttggc ttagtatctt taattagctt tggatttttt agtggttttg tcatattact
     7081 gtctgagttt tgtaggtagg attaatttga aaagaatttg atagtgtggt ccttggggta
     7141 gaatttacct gtacgcatgt tgttagccag cctatagact gttaattact taataatctc
     7201 attgggaaaa actagtagtt ttatattcag gtaacataat tggagaaagc agactagctt
     7261 ctgtggcttt ttgaaatgtc ttttttttct ttcatgtagt gaaatgaaaa gatccaaatc
     7321 ttcagtcaaa ggtagcaaaa ttagatgcca ttgcctaaaa tgtgttttgc tgagtttcca
     7381 aatggatgga tggttaaagg cattggaatt ggtctgcatt ggaaagatgc tagtttagtt
     7441 ctactgtacc tgaagctatg gaaatttaga ttttgttttc tcaaagttgg atcccggagg
     7501 ttgaagttag agtttgaagt tgaaaatcat tttgaaggca gactcgataa agtagtgagg
     7561 gtgaagccct tactttcttc tcaacagaca taataaacat cacctgcatg agttagcagg
     7621 tgggagaacc aaactggatc cctgggtagg agtactcagt aaagcaacac actgtttgct
     7681 tagagaagca tcactatccc cattgagaaa aaatgggtga ttcagtgccc ccaaattcaa
     7741 ctctgtgggg aaaactattg agccagttgt gagtgttgtg ttccaactgg cagactcgat
     7801 tctttgtcat cgttgttctt gttgttgctg ttgttgtttc gcatttccac ttgcacagcc
     7861 ttattgtcat aattaaactc tgattcattt tctctttggt gttagcaaac tccaatgaca
     7921 gaagtggcat ctgtgtattg ataatcagca tttaccctgg caggggacta atcagatagg
     7981 ctggtctcag acattaatcc taccatctga tatttccagc aaaagagaaa gtgttagttc
     8041 cctttccatt cccctcctca tgaatctaga agccctctgt accaagagca tcacattttt
     8101 ctctgtaatc ttaaaaaaaa aaagaaaact gcattgtggg gagggcagag gggggtgtgg
     8161 gtggggggtg gagggtgggg aagcccttgg aggccagact gcagttcatg ccccttcctg
     8221 cttctgacat aaactgttaa agaatcattc atagtgctca cactgggtta ggggacactg
     8281 aactgctttt cagatccatg atcaatcatt cctctgagat tggagctttg ctgtttcatt
     8341 aactgtgcag tgtagactaa cggtgtttaa taaaaatcat ttaaaattgc aaa
//
