LOCUS       NM_001007558            3321 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus adhesion G protein-coupled receptor E4 (Adgre4),
            mRNA.
ACCESSION   NM_001007558 XM_039084034 XM_579175
VERSION     NM_001007558.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3321)
  AUTHORS   Hamann,J.
  TITLE     The EGF-TM7 family of the rat
  JOURNAL   Immunogenetics 56 (9), 679-681 (2004)
   PUBMED   15578266
REFERENCE   2  (bases 1 to 3321)
  AUTHORS   Stacey,M., Chang,G.W., Sanos,S.L., Chittenden,L.R., Stubbs,L.,
            Gordon,S. and Lin,H.H.
  TITLE     EMR4, a novel epidermal growth factor (EGF)-TM7 molecule
            up-regulated in activated mouse macrophages, binds to a putative
            cellular ligand on B lymphoma cell line A20
  JOURNAL   J Biol Chem 277 (32), 29283-29293 (2002)
   PUBMED   12023293
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On or before Apr 4, 2023 this sequence version replaced
            XM_039084034.1, NM_001007558.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643284.12031.1,
                                           SRR26643292.36605.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760476
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-53                JAXUCZ010000009.1  10085355-10085407
            54-144              JAXUCZ010000009.1  10087507-10087597
            145-195             JAXUCZ010000009.1  10122332-10122382
            196-318             JAXUCZ010000009.1  10123195-10123317
            319-471             JAXUCZ010000009.1  10139657-10139809
            472-515             JAXUCZ010000009.1  10144897-10144940
            516-645             JAXUCZ010000009.1  10145359-10145488
            646-747             JAXUCZ010000009.1  10146439-10146540
            748-932             JAXUCZ010000009.1  10148871-10149055
            933-1100            JAXUCZ010000009.1  10168092-10168259
            1101-1304           JAXUCZ010000009.1  10170307-10170510
            1305-1540           JAXUCZ010000009.1  10186899-10187134
            1541-1607           JAXUCZ010000009.1  10189742-10189808
            1608-1699           JAXUCZ010000009.1  10191299-10191390
            1700-1880           JAXUCZ010000009.1  10193315-10193495
            1881-1976           JAXUCZ010000009.1  10212094-10212189
            1977-3321           JAXUCZ010000009.1  10227713-10229057
FEATURES             Location/Qualifiers
     source          1..3321
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q12"
     gene            1..3321
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /note="adhesion G protein-coupled receptor E4"
                     /db_xref="GeneID:450235"
                     /db_xref="RGD:1359641"
     exon            1..53
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /inference="alignment:Splign:2.1.0"
     exon            54..144
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /inference="alignment:Splign:2.1.0"
     CDS             96..2147
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /note="EGF-like module containing, mucin-like, hormone
                     receptor-like 4; EGF-like module containing, mucin-like,
                     hormone receptor-like sequence 4"
                     /codon_start=1
                     /product="EGF-like module-containing mucin-like hormone
                     receptor-like 4 precursor"
                     /protein_id="NP_001007559.1"
                     /db_xref="GeneID:450235"
                     /db_xref="RGD:1359641"
                     /translation="MVATGDMGSRCLPQAPVLSMLLIWSILQMMTISASCPQCNENAI
                     CFNSTHCICKEGFWTGSENRRIIEPHVKCQDIDECRLEETLCKDVSYCRNKIGTYICS
                     CVVKYPIINWVAAIFDIDHPDCYVNKSNEIGSKAACTSGVLYDCNSKEDVAKGATVYL
                     QNTERHILNENSDTPIKSSTRDIVYETNKCKKTTILEAGNNTMKINCTSVLKENKNRD
                     ETTVAFIAYKSLGNLLNGSFFRNKEGFQEVKLNSHIVSGAIRSEIKPVLSEPVILTLQ
                     NTQPIDSRAEHLCVYWEGSEEGGSWSTKGCSHVYTNKSYTICKCFHLSSFAVLVGLSN
                     EENAVLSALSVITYVGLSLSLLCLFLAAITFLLCRPIQNTSTTLHLQLSICLFLADLL
                     FLIGINRTKPKVLCSIIAGMLHYLYLASFMWMFLEGLHLFLTVRNLKVANYSHSGRFK
                     KRLMYPVGYGFPALIVAVSAIAGHKNYGTYNHCWLSLHRGFIWSFLGPVAAIILINLV
                     FYFQVLWILRSKLSSLNKEVSTLQDTKIMTFKAIVQLFVLGCSWGIGLFIFFEVGKTV
                     RLIFAYLFTIINVLQGVLIFLVHCLLNRQVRMEYKKWFHRLQRETESESTELSHSTTH
                     TKMGSSLKTENFCQTGNLHDSNPQNTRAVGLYSMPTKFDLGAEDLNSGTHAYWNRVVS
                     D"
     exon            145..195
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /inference="alignment:Splign:2.1.0"
     exon            196..318
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /inference="alignment:Splign:2.1.0"
     exon            319..471
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /inference="alignment:Splign:2.1.0"
     exon            472..515
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /inference="alignment:Splign:2.1.0"
     exon            516..645
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /inference="alignment:Splign:2.1.0"
     exon            646..747
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /inference="alignment:Splign:2.1.0"
     exon            748..932
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /inference="alignment:Splign:2.1.0"
     exon            933..1100
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /inference="alignment:Splign:2.1.0"
     exon            1101..1304
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /inference="alignment:Splign:2.1.0"
     exon            1305..1540
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /inference="alignment:Splign:2.1.0"
     exon            1541..1607
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /inference="alignment:Splign:2.1.0"
     exon            1608..1699
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /inference="alignment:Splign:2.1.0"
     exon            1700..1880
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /inference="alignment:Splign:2.1.0"
     exon            1881..1976
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /inference="alignment:Splign:2.1.0"
     exon            1977..3321
                     /gene="Adgre4"
                     /gene_synonym="Adgre4p; Emr4; Emr4p"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttgatgaga atgttccaga ctgggtaaga agcaaaggcc tatcatctct ggagaacact
       61 caaccagccc cactgaagaa attcccagaa cactgatggt ggcaactgga gatatgggaa
      121 gccggtgcct gccacaagca ccagttcttt ctatgctgct tatctggtca atattacaaa
      181 tgatgactat ttcagcttcc tgccctcagt gcaatgaaaa tgccatctgc ttcaatagca
      241 ctcactgtat ttgtaaagaa ggattctgga caggctcaga gaatagaaga attattgagc
      301 cccatgtaaa atgtcaagat attgatgagt gtcgattgga agaaactttg tgcaaggatg
      361 tatcatactg tagaaataaa attgggactt acatatgcag ctgtgtagta aaatatccta
      421 taattaactg ggtagctgcc atttttgata ttgatcatcc tgattgttat gtgaacaaga
      481 gcaatgaaat tggatcgaaa gcagcatgta cttcgggagt actgtatgac tgtaactcta
      541 aagaggatgt tgcaaaaggg gctaccgtat atcttcaaaa cacagaacgt cacatcttaa
      601 atgaaaactc agatacacca ataaagagtt ctacacggga tatagtgtat gaaactaata
      661 aatgcaagaa gacaactatt ttggaagctg gcaacaacac aatgaagatt aattgtacta
      721 gtgtcctcaa agaaaacaag aatagagatg aaactacagt ggcttttatt gcatataagt
      781 ctcttgggaa tcttctaaat ggatcatttt ttagaaataa agaagggttt caggaagtaa
      841 aattgaactc tcatattgtt agtggagcca ttcgctcaga aatcaaacct gtgctatctg
      901 aacctgtaat cctgacttta caaaatactc agcccattga ctcaagagca gaacatctct
      961 gtgtctattg ggaaggatca gaggaagggg gtagctggtc tactaagggc tgctcgcacg
     1021 tgtacaccaa taaatcctac acaatttgca agtgtttcca cctgtccagc tttgctgtgc
     1081 ttgttggtct atccaatgag gagaacgctg tgctttctgc actctctgtg atcacctatg
     1141 tgggactcag tctttctctc ttgtgcctat ttctggcggc catcactttt ctcctgtgcc
     1201 ggcccattca gaataccagc acgacactcc acctacagct ctccatctgc cttttcctgg
     1261 ctgacctcct cttcctcata ggcatcaaca gaactaagcc taaggtgctg tgctcaatca
     1321 tagcaggaat gttgcactat ctctacttgg cttccttcat gtggatgttt ctggaagggc
     1381 tacacctttt ccttactgtg agaaatctca aagtggccaa ctacagccac tcaggcagat
     1441 tcaagaagag actcatgtat cctgtaggat atgggtttcc tgcccttatt gttgctgtgt
     1501 ctgcaatagc tggtcacaag aattatggaa catacaacca ctgctggctc agccttcata
     1561 gaggattcat ctggagcttc ttggggccag tggcagccat tatcttgata aacctggtgt
     1621 tctactttca agttctatgg attttgagaa gcaaactttc ttctctcaat aaagaagttt
     1681 ctacacttca agacacaaag attatgacat ttaaagccat cgttcagcta tttgtattag
     1741 gatgttcttg gggcattggc ttatttattt tctttgaagt tgggaagaca gtgagattga
     1801 tctttgccta tctgttcacc atcatcaatg tcctgcaggg tgttttgata tttctggtac
     1861 attgtctgct taatcgccag gtgcgaatgg agtataagaa gtggtttcat aggctgcaga
     1921 gagaaactga aagtgaaagt acggaattgt ctcattctac tactcacacc aaaatgggtt
     1981 cttctctgaa aacggaaaat ttctgccaaa caggaaatct acatgactcc aatcctcaga
     2041 atactagagc tgtaggttta tattcaatgc caactaaatt tgaccttggt gctgaggatc
     2101 tgaactcggg tactcatgct tactggaaca gagttgttag tgactgaatc tactccttct
     2161 ccaagcctct tatagtgatt tttttcacta gtactctgtc atgcacataa aaccacattg
     2221 ctagtgtggt taaaaaaaaa agaacattgg ttattggttg cacattcgat gatcatttca
     2281 ttttatctct tcttgaaaaa tttagatttc tttccctaca tatcatttta tatttctctt
     2341 tcttgccttc atctatagct ttaattggtg agttactagt cttaatgttc tagatcactg
     2401 ttttcttttc aattaacttt tattggtatt cacttccttt atagtgtata ccgctggaat
     2461 attttaaatt atttctttaa ttttaaggtt acaagatagt tacatatttt ttcctttttt
     2521 ctccaagtct catgtatatg tttttcttgg tattcttggc atctattctc attaattttt
     2581 ttaacctgca tatatatatg ctatgcatca caccacacac acacacacac acacacgcac
     2641 acacacactc acgtatatgc atatatgtaa tatacatatg tacatatata tattcttaca
     2701 tgcatgaaaa caatctcctt gttctaaata tttcttctat gtatgttttc agaagagggt
     2761 taaggacagc ccacagggcc taagtcttat acaaagaatc agaggcaatt gcgaaatggt
     2821 gagttgaaga aatagtctta cctagggaag aggatattaa caaactatct aatacaaaat
     2881 cttcagcccc caaattatta agatatgaag gcctatatgg gtctaaggaa ttatctacat
     2941 tgagagtcct tgaaagacca cacctttaag ggaacatcat ctgcatggtg attctgtgtt
     3001 ctgaataggg catattgcat gtctaagtgt tgacaggttt aattatagca ttttacattc
     3061 agtgtatttt gctttggtgt agtgaataat actcttattt ccttttattt gacatctttg
     3121 ttattttttt cctggtaata ttttattcaa caagaaccta gaaccttagt ttattacctt
     3181 ttcttccata gaataattac attatcttcc aggatttaat atgatcagta tttcttgttt
     3241 gcatgtatca aatgtcatga tgaaacacat tactgtgtaa aattaatatc tgccaataaa
     3301 tccaagagaa atagaatacc a
//
