LOCUS       NM_001135798            1997 bp    mRNA    linear   ROD 18-NOV-2024
DEFINITION  Rattus norvegicus aarF domain containing kinase 5 (Adck5), mRNA.
ACCESSION   NM_001135798 XM_001075206 XM_343273
VERSION     NM_001135798.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1997)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 1997)
  AUTHORS   Pagliarini,D.J., Calvo,S.E., Chang,B., Sheth,S.A., Vafai,S.B.,
            Ong,S.E., Walford,G.A., Sugiana,C., Boneh,A., Chen,W.K., Hill,D.E.,
            Vidal,M., Evans,J.G., Thorburn,D.R., Carr,S.A. and Mootha,V.K.
  TITLE     A mitochondrial protein compendium elucidates complex I disease
            biology
  JOURNAL   Cell 134 (1), 112-123 (2008)
   PUBMED   18614015
REFERENCE   3  (bases 1 to 1997)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Jun 3, 2021 this sequence version replaced NM_001135798.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.1023058.1,
                                           SRR26360181.1156760.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-118               JAXUCZ010000007.1  110182275-110182392
            119-222             JAXUCZ010000007.1  110192280-110192383
            223-372             JAXUCZ010000007.1  110193521-110193670
            373-448             JAXUCZ010000007.1  110197533-110197608
            449-649             JAXUCZ010000007.1  110197729-110197929
            650-790             JAXUCZ010000007.1  110198017-110198157
            791-904             JAXUCZ010000007.1  110198236-110198349
            905-1036            JAXUCZ010000007.1  110198446-110198577
            1037-1120           JAXUCZ010000007.1  110198657-110198740
            1121-1202           JAXUCZ010000007.1  110198837-110198918
            1203-1281           JAXUCZ010000007.1  110198982-110199060
            1282-1373           JAXUCZ010000007.1  110199147-110199238
            1374-1626           JAXUCZ010000007.1  110199315-110199567
            1627-1743           JAXUCZ010000007.1  110199638-110199754
            1744-1997           JAXUCZ010000007.1  110199835-110200088
FEATURES             Location/Qualifiers
     source          1..1997
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..1997
                     /gene="Adck5"
                     /note="aarF domain containing kinase 5"
                     /db_xref="GeneID:362943"
                     /db_xref="RGD:1305504"
     exon            1..118
                     /gene="Adck5"
                     /inference="alignment:Splign:2.1.0"
     CDS             107..1855
                     /gene="Adck5"
                     /codon_start=1
                     /product="uncharacterized aarF domain-containing protein
                     kinase 5"
                     /protein_id="NP_001129270.1"
                     /db_xref="GeneID:362943"
                     /db_xref="RGD:1305504"
                     /translation="MWRPMRLCHFHSTLLQSRQKPWPCPAIFFRRNFKSPLARTSRTR
                     LLWRRTFSATVVGTPFLFGAHYFMAESSERRKLRLAVDGIGRFGRSVKIGFFISLDYW
                     WCTNVVLRGVEENSPKYVEIMSACHQRAADALVAGAISNGGLYVKLGQGLCSFNHLLP
                     TEYIQTLRVLEDKALTRGFREVDELFLEDFQALPSELFQEFDYEPMAAASLAQVHRAK
                     LQDGTAVAVKVQYIDLRDRFDGDVHTLELLLRLVELMHPSFGFSWVLQDLKGTLAQEL
                     DFENEGRNSERCAQELKHFHHVVIPRVYWDKSSKRVLTADFCDGCKVNDMEGIKSQGL
                     AVQDVATKLIQTFAEQIFHTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLDEK
                     DRSSLCQLWRAIILRDDAAMKTHAAALGVQDYMLFSEVLMQRPVRLGQLWGSHLISRE
                     EAAYMQDMAREHFDGIMEVLKSLPRPMLLVLRNINTVRAINSSLGTPVDRYFLMAKSA
                     VWGWSRLVGAAYQGIYSSRLLRHIKVIWEALKFEVILRLEILAMRFTALMLRVMVRLG
                     FAPKAEAEEVYQYLEM"
     exon            119..222
                     /gene="Adck5"
                     /inference="alignment:Splign:2.1.0"
     exon            223..372
                     /gene="Adck5"
                     /inference="alignment:Splign:2.1.0"
     exon            373..448
                     /gene="Adck5"
                     /inference="alignment:Splign:2.1.0"
     exon            449..649
                     /gene="Adck5"
                     /inference="alignment:Splign:2.1.0"
     exon            650..790
                     /gene="Adck5"
                     /inference="alignment:Splign:2.1.0"
     exon            791..904
                     /gene="Adck5"
                     /inference="alignment:Splign:2.1.0"
     exon            905..1036
                     /gene="Adck5"
                     /inference="alignment:Splign:2.1.0"
     exon            1037..1120
                     /gene="Adck5"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1202
                     /gene="Adck5"
                     /inference="alignment:Splign:2.1.0"
     exon            1203..1281
                     /gene="Adck5"
                     /inference="alignment:Splign:2.1.0"
     exon            1282..1373
                     /gene="Adck5"
                     /inference="alignment:Splign:2.1.0"
     exon            1374..1626
                     /gene="Adck5"
                     /inference="alignment:Splign:2.1.0"
     exon            1627..1743
                     /gene="Adck5"
                     /inference="alignment:Splign:2.1.0"
     exon            1744..1997
                     /gene="Adck5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tggagagtgt gggccggtgc gcaagcgcat tgcctattct ttcgcggggt cggctgagca
       61 gtggggacgt ctgcggcgaa accgggaaga gagcactgcc ggggacatgt ggcggccgat
      121 gcgactgtgc cacttccact ctactctgct gcagagcagg cagaagccct ggccgtgccc
      181 tgccatattc ttcaggagaa acttcaagag cccactggca aggacctcaa ggaccaggct
      241 gctgtggagg aggacattct ctgccactgt ggtgggcacg cccttcctct ttggagccca
      301 ttatttcatg gcagagtcat cggagaggag gaagctgcga ctggcagtag atggcattgg
      361 gcgctttggc aggtctgtga agattggctt cttcatctcc ctggactact ggtggtgtac
      421 gaatgttgtc cttcgaggag tggaagagaa cagcccgaag tatgtggaga tcatgtctgc
      481 atgtcaccag cgtgcggctg atgccctggt ggctggagcc atcagcaatg ggggcctcta
      541 cgtgaaactg ggccaagggc tgtgctcctt caaccacctg ctgccaaccg agtacatcca
      601 gacgctgcgt gtgctggagg acaaagccct tactcgggga ttccgggagg tggatgagtt
      661 gttccttgaa gacttccagg cactccctag tgagctcttc caggaatttg actatgagcc
      721 gatggctgct gcaagcctgg ctcaggtgca ccgtgccaag ctacaggatg gcactgctgt
      781 agctgtgaag gtccagtaca ttgacctacg agaccgcttt gatggggatg tgcacaccct
      841 ggaactcctg ctgcggctcg tggagctcat gcaccccagc ttcggcttca gctgggtcct
      901 acaggacctg aaggggacct tggcccagga gctggacttc gagaatgagg gccggaattc
      961 tgagcgctgt gctcaggagc taaagcactt ccaccatgtt gttatccctc gggtgtactg
     1021 ggacaagtcc agcaagcggg tgctgacagc tgacttctgt gatggctgta aggtgaatga
     1081 catggagggc atcaagagtc aggggctggc agtgcaggat gtagcaacga agctgatcca
     1141 gacctttgct gaacagatat tccacactgg cttcattcac tctgaccccc accctggcaa
     1201 tgttctggtg cggaaaggtc cagatggaaa agcagagctg gtgctcctgg accatgggct
     1261 ctaccagttc ctggatgaga aggaccgatc ctccctgtgc cagctgtggc gggccatcat
     1321 cctgagggac gatgctgcaa tgaagacaca tgcagccgca cttggggtcc aagactacat
     1381 gctcttctct gaggtgctca tgcagcgacc tgtgcgcctg ggccagctgt ggggttccca
     1441 cctgataagc cgggaggagg cggcctacat gcaagacatg gcccgtgaac actttgacgg
     1501 cataatggaa gtgctcaagt cattgccgcg gcccatgctg ctagtgctgc gaaacatcaa
     1561 cacagtgcgc gctatcaact ccagcctggg cacccctgtg gaccgctact tcctcatggc
     1621 caagagtgct gtctggggct ggagccgcct ggtgggtgca gcgtaccaag gcatttacag
     1681 cagccgcctc ctgcgccaca tcaaggtcat ctgggaggca ctaaagtttg aggtgattct
     1741 gaggctggag atcctagcca tgcggttcac cgccctcatg ttgcgtgtta tggtccgcct
     1801 gggctttgcc cccaaggctg aggctgagga ggtctatcag tacctggaga tgtagttccc
     1861 tgagccagaa tgactgccag gggcgagcag tttccatccg gcatgggcac agcgcacaga
     1921 tatctacaac ccgggcctgg aatgggggat acactatggg gttcttaaac atgatgacca
     1981 cgctcgtctg aaagaaa
//
