LOCUS       NM_001115028            3301 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus adenosine deaminase, tRNA-specific 2 (Adat2),
            mRNA.
ACCESSION   NM_001115028 XM_001071010 XM_341731
VERSION     NM_001115028.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3301)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3301)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000008.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001115028.3.
            
            On Jun 3, 2021 this sequence version replaced NM_001115028.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158616.1, CV078390.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132291, SAMD00132295
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-186               JACYVU010000008.1  6023696-6023881
            187-291             JACYVU010000008.1  6027445-6027549
            292-442             JACYVU010000008.1  6035922-6036072
            443-549             JACYVU010000008.1  6037573-6037679
            550-622             JACYVU010000008.1  6041559-6041631
            623-3301            JACYVU010000008.1  6041723-6044401
FEATURES             Location/Qualifiers
     source          1..3301
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p13"
     gene            1..3301
                     /gene="Adat2"
                     /gene_synonym="Deadc1"
                     /note="adenosine deaminase, tRNA-specific 2"
                     /db_xref="GeneID:361453"
                     /db_xref="RGD:1309642"
     exon            1..186
                     /gene="Adat2"
                     /gene_synonym="Deadc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             91..666
                     /gene="Adat2"
                     /gene_synonym="Deadc1"
                     /EC_number="3.5.4.33"
                     /note="deaminase domain containing 1"
                     /codon_start=1
                     /product="tRNA-specific adenosine deaminase 2"
                     /protein_id="NP_001108500.1"
                     /db_xref="GeneID:361453"
                     /db_xref="RGD:1309642"
                     /translation="MEEKVESTTVPDGSCVVSVQETEKWMEEAMRMAKEALENIEVPV
                     GCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCHRHGQSPSAVFEHTVLYV
                     TVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPGYRA
                     EEAVELLKTFYKQENPNAPKSKVRKKDCQKS"
     exon            187..291
                     /gene="Adat2"
                     /gene_synonym="Deadc1"
                     /inference="alignment:Splign:2.1.0"
     exon            292..442
                     /gene="Adat2"
                     /gene_synonym="Deadc1"
                     /inference="alignment:Splign:2.1.0"
     exon            443..549
                     /gene="Adat2"
                     /gene_synonym="Deadc1"
                     /inference="alignment:Splign:2.1.0"
     exon            550..622
                     /gene="Adat2"
                     /gene_synonym="Deadc1"
                     /inference="alignment:Splign:2.1.0"
     exon            623..3301
                     /gene="Adat2"
                     /gene_synonym="Deadc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcttcccgg aagcaagggc ccgcgcccgc cgcgttccgc tgtcctcttt cctccagtcc
       61 cttggcccgg agtctctgag agaaggcgat atggaagaga aagtggagtc caccactgtt
      121 ccagacggct cgtgcgtggt gtccgtacag gagaccgaaa agtggatgga ggaggcgatg
      181 cgaatggcca aagaagcact cgagaatatt gaagttcctg tcggctgcct catggtctat
      241 aacaatgaag ttgtggggaa gggaagaaat gaagtgaatc aaacaaaaaa cgctactcgg
      301 catgctgaaa tggtggccat cgatcaggtc ctggattggt gtcatcgaca tggacagagc
      361 ccttcggcgg tattcgaaca cacggtgttg tacgtcactg tggagccgtg catcatgtgt
      421 gccgctgccc tgcgcctcat gaaaatcccg ctggtcgtct atggctgtca gaatgaacgg
      481 tttggtggtt gtggttctgt cctaaacatt gcctctgctg acctacccaa tactgggaga
      541 ccatttcagt gcatccccgg gtaccgtgct gaggaggccg tggagctcct aaagaccttt
      601 tacaaacagg aaaacccaaa tgcaccaaaa tcaaaagttc ggaaaaagga ttgtcagaaa
      661 tcctgatgct gtagtgatca aggactagtg ttggagacct ggacagaatt ccggcctgaa
      721 tgctgctggc atcactggtc acgtttacat gttattactg tgtgtgaaaa tggtgtctct
      781 catcatttgc tctgttaagg gaacaaatta gccctttttt aaaagtctgt aaacaactat
      841 tagctcttcc accaagctga aagaatgttt ccaggaaggg gagggattaa agtttgagat
      901 cagcaagcag tgcctgccct tgacccacag ccttagcccc agcttcatga agctctttgt
      961 ggctgtggag atggccaagt ggttgccatg cagccacgag gactgggtcc ccaacaatgc
     1021 caggtggact tggtggcctg cctgtaattc cagtacttgg aaatcccagg gctcccgaaa
     1081 tcccaaagca agctaactaa ttagattagc ccttaccggt gagctctgtg gtcaaatgag
     1141 agatgctgcc tcaataataa cgtgaagggt gatctcggag gaaccctggt gtcaacctta
     1201 ggcgtcacat gtccacacgc tcctcatctc ccaacccaaa tgtaagtctg acacatcatc
     1261 gggagattga tcaagctcaa aacaggaaat agaagaaaga aaaaaaaaaa aaaaaaaagc
     1321 aagccttgac attttaccga atgcattcag acccggtcct acaccaggct ccaccaggca
     1381 caggttcctg ggcttgtcct aatttgtatt gactttgggg ggcgggtgtg gaggcagagg
     1441 aggctcaccg gtgctgttcc ttagatgcag tgccactcct tcttgacttt tttttttttt
     1501 taaagagaag atttcttgaa atttaccact cgggggtgag ggattgtgta ggctggccag
     1561 gaatgcccag agttctacct gtgcaggaat tacaggcaca caccgccata ctgtccctcc
     1621 ctccctccct ccctccctcc ctccctccct ccctccctcc ctgcctccct cctttccttc
     1681 tcttttttaa atgtgagttt tggagattga actcaggtcc ccctgcgctt gactgaccga
     1741 gatagctccc caatcctaga acattttttt aaaagtttta aaagtttttt ttagataaaa
     1801 tggatgcttt taagcaagtg tttgagcctt taaaaaaaaa tcatagcata ttgctacaat
     1861 aaacttttat tcatgccttc tttcaagagg aatagtcttc aaatagtggg tgctggacag
     1921 atggctcggg ggttaaaaac atacaccgct tttttagagg atacaagttt ggttcccagc
     1981 accatctctg gacaatccac aacctgtaat tccagttcca gggaaaccaa taccctcttc
     2041 tggactctgc gggtacctgc acttacttac acatacacac aatcccacta ttcatacaca
     2101 cacacacaca cacacacaca cacacacaca cacttagaat ttctaaagga ggaaatgaaa
     2161 gtgaaatagt tccttataat gaagcaacta ttcctttaac gtccatttct tccctagaac
     2221 aaagccaaga ccttatactc tcaaaacaaa gaccttacat tctccagaga gaaatgaagg
     2281 tggtccgata tgtaacttgc tggaagatga cagttgctgc tggtcataag ggtgcacacc
     2341 gtagccccac tactggggag gttgaagcaa gagaatcatg aattcaaggc ctgggctatg
     2401 tagggacccc acccatcgtc ccaattacaa ccagttgcag ttcggaataa gaatgcagga
     2461 atgttggttt caagattcaa taaaatgatc cattgaatca gagataacaa agctactact
     2521 cttttcaaat gcggggaata aagcttaaat cgagtatcta aaaattagac ctcacaacaa
     2581 agtctgataa ggtaggtcac tggagcaaag gtgcgacttt tccgcgccgc cctgggcgca
     2641 gtgtgcgtct ctgcccagaa gggggcctcg ctgttccacc taaaggccag tgccagcgca
     2701 gcctcagttt ctacagcgca ttagtccttg atgcaaagtg gctgtttgtt gactctgcca
     2761 tttgagcact gtctctgact tgtttgtttt gaattacatt acaggctgga atggattgtg
     2821 gtggtagtgt ttttatattg cctgggggag cagctaatca cagttacatg cttcagaaga
     2881 tttataattg catggtttcg tgagtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     2941 tgtaacagca tttcagaagt ttaatgagcg aagagtacat aggattttaa atttacagta
     3001 atagtctgtg caccttctct tcggttttat ctactttgaa gattgtcttc tcattaagtt
     3061 ttagtgcctt gactagtgtg ttcctttttg cagttggtca taattcaccc ccggctcctg
     3121 tgctctcctg taagaagaca tcattatatt tactgacttc atatcatttg gggggaatta
     3181 tctgtacttg aaacaacctg ggatcatgat aaaccgttga aagtaaattt agtttgaatt
     3241 taggggaaaa atgataatag caacagcaac gacaataaag gtgaaaacat agaaccagaa
     3301 a
//
