LOCUS       NM_001109611            3221 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus adenosine deaminase, tRNA-specific 1 (Adat1),
            transcript variant 1, mRNA.
ACCESSION   NM_001109611 XM_001075711 XM_006255634
VERSION     NM_001109611.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3221)
  AUTHORS   Maas,S., Gerber,A.P. and Rich,A.
  TITLE     Identification and characterization of a human tRNA-specific
            adenosine deaminase related to the ADAR family of pre-mRNA editing
            enzymes
  JOURNAL   Proc Natl Acad Sci U S A 96 (16), 8895-8900 (1999)
   PUBMED   10430867
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On or before Oct 25, 2021 this sequence version replaced
            XM_006255634.4, NM_001109611.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.76556.1,
                                           SRR26643429.56142.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-102               JAXUCZ010000019.1  56866016-56866117   c
            103-288             JAXUCZ010000019.1  56864036-56864221   c
            289-357             JAXUCZ010000019.1  56863686-56863754   c
            358-412             JAXUCZ010000019.1  56861382-56861436   c
            413-543             JAXUCZ010000019.1  56860726-56860856   c
            544-1147            JAXUCZ010000019.1  56856303-56856906   c
            1148-1293           JAXUCZ010000019.1  56852630-56852775   c
            1294-1393           JAXUCZ010000019.1  56851412-56851511   c
            1394-1480           JAXUCZ010000019.1  56847313-56847399   c
            1481-3221           JAXUCZ010000019.1  56842209-56843949   c
FEATURES             Location/Qualifiers
     source          1..3221
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..3221
                     /gene="Adat1"
                     /note="adenosine deaminase, tRNA-specific 1"
                     /db_xref="GeneID:690810"
                     /db_xref="RGD:1591020"
     exon            1..102
                     /gene="Adat1"
                     /inference="alignment:Splign:2.1.0"
     exon            103..288
                     /gene="Adat1"
                     /inference="alignment:Splign:2.1.0"
     CDS             123..1616
                     /gene="Adat1"
                     /EC_number="3.5.4.34"
                     /note="isoform 1 is encoded by transcript variant 1;
                     tRNA-specific adenosine deaminase 1"
                     /codon_start=1
                     /product="tRNA-specific adenosine deaminase 1 isoform 1"
                     /protein_id="NP_001103081.1"
                     /db_xref="GeneID:690810"
                     /db_xref="RGD:1591020"
                     /translation="MWTADEIAQLCYAHYIKLPKQGKPEPNREWTLLAAVVKIQTPAN
                     QACDTPDKQIQVTKEVVSMGTGTKCIGQSKMRESGDILNDSHAEVIARRSFQRYILHQ
                     LHVAAVLKEDSIFLPGTQRGLWRLRPDLSFVFFSSHTPCGDASIIPKLEFEEQPCCPV
                     IRNWANNSPGEGSETLEGSRNKRSCEGPDSPVAKKKRLGTPAGSLSDCVAHHGAQESG
                     PAKPDASSSGLTKEELDAVNGTASGSFKVVDIYRTGAKCVPGETGDLRKPGAAYHQVG
                     LLRVKPGRGDRTCSMSCSDKMARWNVLGCQGALLMHFLEKPIYLSAVVIGQCPYSQEA
                     MRRALTGRCQETLVLPRGFEVQELKIQQSSLLFEQSRCAVHRKRGDSPGRLVPCGAAI
                     SWSAVPQQPLDVTANGFPQGTTKKEIGSPRARSRISKVELFRSFQKLLSCIAEDERPD
                     SVRVQKLDTYQEYKEAASAYQEAWSALRRVQPFSSWIRNPPNYHQFK"
     exon            289..357
                     /gene="Adat1"
                     /inference="alignment:Splign:2.1.0"
     exon            358..412
                     /gene="Adat1"
                     /inference="alignment:Splign:2.1.0"
     exon            413..543
                     /gene="Adat1"
                     /inference="alignment:Splign:2.1.0"
     exon            544..1147
                     /gene="Adat1"
                     /inference="alignment:Splign:2.1.0"
     exon            1148..1293
                     /gene="Adat1"
                     /inference="alignment:Splign:2.1.0"
     exon            1294..1393
                     /gene="Adat1"
                     /inference="alignment:Splign:2.1.0"
     exon            1394..1480
                     /gene="Adat1"
                     /inference="alignment:Splign:2.1.0"
     exon            1481..3221
                     /gene="Adat1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttccgcagc gcagccaggt tctgcgacca gcgtggcggc agagggagag gttgcggtgc
       61 gtggatagca gggtgtcagt gtctccggat cggcgtctcg ggcctcagct ccagcttcac
      121 ctatgtggac cgcagatgag attgcgcagc tgtgctatgc acactacatc aaactgccca
      181 agcaggggaa gcctgagcca aaccgtgagt ggactctgtt ggcggctgtg gtgaaaatac
      241 agactccagc taaccaagca tgtgacaccc ctgataagca gatacaagtg acaaaggaag
      301 ttgtctcaat gggaacagga acaaaatgca taggccagtc caagatgaga gagagcggag
      361 acatcctcaa tgacagccat gctgaggtca tagccagaag gagtttccag aggtacatcc
      421 tccatcagct ccatgtggcg gccgtcctaa aggaagacag catcttcctt cctggcactc
      481 agagaggact gtggaggctc agacctgacc tgtcttttgt gtttttctct agccacacac
      541 cctgtgggga cgcctccatc attccaaagc ttgagtttga agaacagcct tgctgtcctg
      601 tcatcagaaa ttgggccaac aactcacctg gagaagggag cgagactcta gaaggttcta
      661 gaaataaaag gagctgtgaa ggccctgaca gtcctgtagc caagaagaaa aggcttggaa
      721 cacctgctgg ttccctctcc gattgtgtag ctcaccatgg ggcacaggaa agtggtccag
      781 ccaaaccaga tgccagcagc tctggtctca ccaaggagga actggatgct gtcaatggaa
      841 cagcttccgg tagcttcaaa gtggtggaca tatacagaac gggagccaag tgtgttcctg
      901 gagaaactgg agacttgaga aagccaggtg ctgcctatca ccaggtgggg ctacttcgtg
      961 tgaagcctgg ccggggagac aggacatgct ccatgtcctg tagtgacaag atggcgaggt
     1021 ggaatgtcct tggatgccag ggcgcactgc taatgcactt cctggagaag cccatctacc
     1081 tgtcagccgt ggtcatcggg cagtgcccat acagccagga agccatgagg agagcactga
     1141 cgggcaggtg tcaggaaacc ttggttttac ccagaggctt tgaagttcaa gagctgaaaa
     1201 tacagcagtc gagtttgctc tttgaacaga gccgctgtgc agtccacagg aaaagagggg
     1261 acagtccagg ccgactcgtc ccttgtgggg cagctatcag ctggagtgct gttcctcagc
     1321 agcctttgga tgtcacagcc aatggtttcc cacagggaac aacgaagaaa gaaatcggaa
     1381 gccctcgggc cagatcccga atcagcaagg tggaactctt tagatcattc cagaagctgc
     1441 tgagctgcat tgcagaagac gagcggccgg actccgtcag ggtgcagaag ctggacacct
     1501 atcaggagta caaggaggcc gcgtctgcct accaggaagc ctggagtgca ctccggaggg
     1561 tacaaccgtt ttcgtcctgg atcagaaacc cacccaacta ccaccaattt aaatgacccg
     1621 ctggtatcag gacccttcac agtatttgcc cctccctcca tgctgagcaa acctctgctt
     1681 ttctgttggt taaaccccaa ggagaaagag atgccttctc cgagagcgct gcccctcttt
     1741 ggtgtcataa atggaaccca gaacctcatc agaccgcagc agctccctgc taagtagcct
     1801 cagaaacgac cttggtatcg gccttcagct gtgtctgatt ggttcggaac acacggcatc
     1861 agagtttgga acgtgatgct ttcagagtga tctgcagcag ctctgcttta atcttcttac
     1921 attgattctg caagtgtgca ttgggctgaa atcatctcag aatgatggga actccacagc
     1981 ctttcatcct gcggttgaga atgtgtctca gattcccagc cgccctttga gaaccatcat
     2041 tcccagtcct cagccaccag atgtggttga agttaacttt acctcaggct cagcacaggg
     2101 ctagccttgg aaagctctgt tctcagtcaa ctttacctca ggctcagcac agggctagcc
     2161 ttggaaagct ctgttctcag ttaccaagaa aggtctgttt gtttgtagcc tacactgtcc
     2221 ttggctttca gtccttccaa gtaccaagat tataggcata aaccgccatc atagctagca
     2281 caagatagtc tctatgtctc tgtctctgtc tcctcctcct ccccctatcc ccacctttta
     2341 cttgagacaa ggctggcctt gaactcaaca agcagccaag gatgaccttg ggctctgatc
     2401 ttttcatctc tgactcctaa tgtaacaccg tactttgctt ccaagatttt cttctgacca
     2461 gtgttgtgag ggccaccata atcttgtaac tgccagtagc caccatcttt tcctgccaca
     2521 cagagacagc cagtggagaa tgaaggtggc aaagaagaaa atggccagaa tagccaaagc
     2581 ctggggaccc agcttgcacc caaactacaa gagacaaagg cctggtttga ttgtctttag
     2641 ctatttatgg ggcccacaca tgctgtggtg tgtgtgtgtg gtaagcacct gtatcagctg
     2701 agcagtccta ccaggtgcct gctgcttaga tcagattgtt ttcttgttaa ctcagttccc
     2761 aaatgcctta atttcctaca gcatcagcaa aagacctagg aactaaccct atttaactct
     2821 cacctaagag cgcgcacctt attcccaccg tgactaactg gctggaaata gaagctctgc
     2881 ttctactcag tgtcactgtg tttcatagtg ctgtgtgtgc tgtgctgtgc tgtgctgtgc
     2941 tgtgtgtgct gtgctgtgct gtgctgtact gtgctgtact gtgctgtgct gtgctgtgtg
     3001 cgctgggctt tattttggtt tggttttcca gaaagggttt gtttgtagcc ctggctgccc
     3061 tggaactcac tttgtagacc aggctggcct caaactcaga gatctgcctg cctctgtctc
     3121 ctgagtgctg ggataaaagg tgtgtgccac catgcggggt tcttttatga gatttttata
     3181 tcataaagac ttgaataaaa tgtgaaggag taacttttat a
//
