LOCUS       XM_039098454            6095 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus adenosine deaminase, RNA-specific, B1
            (Adarb1), transcript variant X7, mRNA.
ACCESSION   XM_039098454
VERSION     XM_039098454.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098454.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6095
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6095
                     /gene="Adarb1"
                     /gene_synonym="Adar2; Red1"
                     /note="adenosine deaminase, RNA-specific, B1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 48 ESTs, 15 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     17 samples with support for all annotated introns"
                     /db_xref="GeneID:25367"
                     /db_xref="RGD:2033"
     CDS             72..2207
                     /gene="Adarb1"
                     /gene_synonym="Adar2; Red1"
                     /codon_start=1
                     /product="double-stranded RNA-specific editase 1 isoform
                     X4"
                     /protein_id="XP_038954382.1"
                     /db_xref="GeneID:25367"
                     /db_xref="RGD:2033"
                     /translation="MDIEDEENMSSSSTDVKENRNLDNMPPKDSSTPGPGEGIPLSNG
                     GGGSTSRKRPLEEGSNGHSKYRLKKRRKTPGPVLPKNALMQLNEIKPGLQYMLLSQTG
                     PVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAMGRTLS
                     VNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLT
                     QPPLPIPPPFPPPSGKNPVMILNELRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEG
                     SGRNKKLAKARAAQSALATVFNLHLDQTPSRQPVLSEGLQLHLPQVLADAVSRLVLGK
                     FSDLTDNFSSPHARRKVLSGVVMTTGTDVKDAKVISVSTGTKCINGEYMSDRGLALND
                     CHAEIISRRSLLRFLYAQLELYLNNKEDQKKSIFQKSERGGFRLKDTVQFHLYISTSP
                     CGDARIFSPHEPVLEGMAPDSHQLTEPADRHPNRKARGQLRTKIESGEGTIPVRSNAS
                     IQTWDGVLQGERLLTMSCSDKIARWNVVGIQGALLSIFVEPIYFSSIILGSLYHGDHL
                     SRAMYQRISNIEDLPPLYTLNKPLLSGISNAEARQPGKAPNFSVNWTVGDTAIEVINA
                     TTGKDELGRPSRLCKHALYCRWMRVHGKVPPHLLRTKITKPTTYHESKLAAKEYQAAK
                     ARLFTAFIKAGLGAWVEKPTEQDQFSFTP"
ORIGIN      
        1 aatggaagct ttgaagatgc ctttacaaaa gaggtctccg ccagtcaaga agccctcaaa
       61 agcattttac catggatata gaagacgaag agaatatgag ttccagcagc actgatgtta
      121 aagaaaaccg caatctggac aacatgcccc ccaaggacag cagcacaccc gggcctggcg
      181 agggtattcc gctctccaac gggggtggtg ggagcaccag caggaagcgg cccctggagg
      241 agggcagcaa tggccactcc aagtaccgcc tgaagaagcg aaggaaaacg ccagggcccg
      301 ttctacccaa gaacgccctg atgcagctga acgagatcaa accgggctta cagtacatgc
      361 tgctgtccca gacaggaccc gtgcacgcac ctctgtttgt catgtctgtg gaggtaaacg
      421 ggcaggtctt tgaaggctcc ggccctacaa agaagaaggc aaagctgcat gctgctgaga
      481 aggccctgcg gtcttttgtc cagtttccca acgcctctga ggcccacctg gccatgggaa
      541 ggaccctctc cgtgaacaca gacttcacgt ccgaccaggc ggacttcccc gacacgctct
      601 tcaatggctt tgagactcca gacaagtcgg agccaccctt ctacgtaggc tccaatgggg
      661 atgactcctt cagctcaagc ggagacgtta gcctgtcagc ctccccagtg cctgccagcc
      721 ttacccagcc tcctctgccc atcccaccac cattcccacc cccaagtggg aagaaccccg
      781 tgatgatctt gaatgagctg cgcccagggc tgaagtatga cttcctctcc gagagtgggg
      841 agagccacgc caagagcttt gtcatgtccg tggtggtaga tggccagttc tttgagggct
      901 cagggagaaa caagaagctt gccaaggccc gggctgcaca gtctgccttg gctactgtct
      961 tcaatttgca cttggaccaa acgccatctc gccagcctgt cctcagtgag ggtctccagt
     1021 tgcatttgcc acaggtattg gcagatgctg tctcacgcct ggtcctgggt aagttcagtg
     1081 acctgacaga caacttttcc tcccctcacg cacgaagaaa agtgctctct ggagtagtga
     1141 tgaccacagg tacagatgtc aaagatgcca aggtgataag tgtttcgaca gggacgaagt
     1201 gcatcaacgg cgaatacatg agtgaccgtg gcctggctct caatgactgc cacgcagaga
     1261 taatctcccg aaggtccctg ctcaggtttc tatacgcaca gctcgagctt tacttaaata
     1321 acaaagaaga ccagaaaaag tccatatttc agaagtcaga gcggggtggg ttccggctga
     1381 aggataccgt gcagttccac ctgtacatca gcacctcacc ctgcggagac gccagaatat
     1441 tctctcccca tgagcccgtg ctagagggta tggcgccaga ctcccaccag ctgacagaac
     1501 cggctgatag acatccgaat cgcaaagcaa ggggacagct gcggactaaa atagaatctg
     1561 gcgaggggac aatccctgtg cgctcaaatg ccagcatcca gacctgggat ggggtgctgc
     1621 agggggaacg gctgctcacc atgtcctgca gtgacaagat agcacgctgg aacgtggtgg
     1681 gcatccaggg ggccctgctc agcattttcg tggagcccat ctacttctcc agcatcatcc
     1741 tgggcagcct gtaccacggg gaccacctct ccagggccat gtaccagcgg atctccaaca
     1801 tagaggacct gccaccgctc tacaccctca acaagcccct gctcagcggt atcagcaatg
     1861 cagaggcacg gcagccaggg aaggcaccca acttcagtgt caactggacg gtgggcgaca
     1921 cggccattga ggtcatcaat gccacaacag ggaaggatga gctaggccgc ccctcccgcc
     1981 tgtgtaagca cgcgctgtac tgtcgctgga tgcgggtaca cggaaaggtg cccccccacc
     2041 tgctgcgcac caagatcacc aagcccacca cctaccacga gtccaagctg gcagcgaagg
     2101 agtaccaggc tgccaaggca cgtctgttca ctgccttcat caaggcgggg ctgggcgcct
     2161 gggtggagaa gcccacagag caggaccagt tctccttcac tccctgagcc aggcggagtc
     2221 gagagcacag agtgcgaggc tgtggtgccg aactgtcccc cagagccttg cgtctgacct
     2281 gggacaggtg tgcacctcgg ggacggcacg gggagtctgg gggaaccact ggacttcaag
     2341 catcatcccc ggcgcctctc accacccagc agggcagtgt ggggatgtgt agggtgctgg
     2401 gcacctcaca tctgagtagg gatcaggtgc acagtggggg tgcatggggg cacaggggcc
     2461 catcaccacc ccttgccaca catttcccct cttgagctac ccagtgaccg ctttatatct
     2521 cagtttacat tagacattga gttctactga gtagggcttc ctcaagtata ggaaaataga
     2581 aatttacttt gtgtgagatt cttgaataaa taatttattc agagctagga atgagattta
     2641 taaaataaga agtaattatg tcaggtcact tttatgccac attattttaa ttgcaaaaga
     2701 aaaaaaaagc gtttctatgt gaaagaacac aggaatctag aggtaggaag tagaagagag
     2761 ctaccgcgca cacctctgtg cgtggctcct ctccgtgggg ccttcacact taggttctca
     2821 cagtaggttt taacagctct cctggggtga ccccagcatg atatggtgtg accttggcac
     2881 acactggccc tgcagctggg atgctgtgtc ctacagagcc gtgacctagg ctctgctgcc
     2941 tctagaatcg tccatgctcc cggttaggct caaatcatgg aaaactctat ttgctaccag
     3001 gtaactgaag acccaatctg tccgtagcct gtcctggctg gccatcatac gggggtccta
     3061 accatcgagg ttttgtgacc tagaggcacg cagtaggact gctccacagt cagagcacag
     3121 tcttccttct gctcccccct tgggatctgg tgggtaggaa ccactgaccg ctcagagagc
     3181 ctcacgggat ggaaagagtt gtgagcaggt accgtgcttg gagcgcgcca cctaaggcgg
     3241 attatccggt accccttcca gcttcagaca tgtttgacaa gttaaacatt caggttgaag
     3301 ctggtgggac agtgtgaacc ttggaacgct gcagaccaga cattggtgtc tcgacaggca
     3361 ggcctgggtg ctcctggtat cttggggctg aaccccaaaa tgctgctgag cacccgtgag
     3421 gcacagggtg gcacccaggg ccctggagcg gacacctgga cctcctgtgc tcagactcgc
     3481 cccaggtgcc ttgttgcttc cactcaggat tagggaggag tagagggggg gaggaggggc
     3541 tgtggctgtc agctcagtgt gctagcctgg tccagcaggt tgctctgaag agcctcaggg
     3601 cctcgagcag agaaggtgca ggctcatccc acagcacaca tccaccacgg ctgcatccag
     3661 agctctgaca gctatggccc tgagctgttc acccaggtgt gtgtgtgtgt ccttgacaca
     3721 cttgagaaag agacagaata agaacatagc cactgtgggt tccacctgat tcccagcaga
     3781 cctcaagagg ctgtgtgtca ttgcttaagt gagacccact tgtgtctccg tgtcaggagc
     3841 cctgtcgtgt ccttgtaggt gtctccgtgg ttctcgtcct gcggggcttg atcttcgagg
     3901 catgaaggtc ctagcagaac tccctagtga cacatgccat cttggatctc ctcagatcac
     3961 cacctgcccc cctgaaaggg agccctccca ggctgcattg caggcccacc ttcgggtgaa
     4021 acgcattggg gctccttaga gaaacggtct cattttaccc cagtaccaca ccttccccac
     4081 agctcctgca ctttctagaa agaaaaacac acatgttggt gtgctcttac tcttgttttt
     4141 aagtcgaatt tttcctaatg gagatgggga gatgatttag tttgttttta agtacatttt
     4201 ggttataaag tatagcaaaa gtatatccca tatacaccaa aaaccatgca ttacatctag
     4261 ctttccatgt cagataacag gctgcccaac caggaagtga aggttacatg tatagatcat
     4321 ctgaaactac aggggctggt cctgcttaga cctgacctag gcccagaaag gagggggagc
     4381 ctggaggcac cctgtggtga ggagccggca tgggacatgt gccaccttcc cctgcactca
     4441 agacatggca gctcgaacag cccaaatgtg accagacaaa aaggaaacaa atattgattt
     4501 aagacataag ccctttgagc ctcttcccaa aggtccccac aatggtagtt catgtccagg
     4561 acctaaatgt cacagactca gcagaaagct tgacacacca agagcctgat ggaaatgtct
     4621 tggctacctc agcaggtgaa gaacatgagt gtctgtgttc agagcatgca gctaaacctg
     4681 aagttttaag tccataccgc agtatccctc aggattactc agaccgccgt cacagggctg
     4741 cagctacaca gcaggaagac attgtggccg ggagccttgg ctgggctatc ttgtttctgc
     4801 agagccgaga ctctccactt agatgtaggc agcgtgagtg tggcgtccac gccgttagcc
     4861 actcatgatg tcaggaggta gcacgtctcc tagcgagaga caccaaagaa caactttaaa
     4921 gctgaatctg agtctctcac cattctgttt cgaagctttt cctttagtaa ttaaaacctg
     4981 tctaagagcg caggccccca tcttgtaagg cattgctctc tgtttatttt atcacccagc
     5041 tcctcttgcc tccagactgt acgtgctgct tggtttttaa actttagttt cagacaggtg
     5101 caccaggggc gggcagccac cagagggtca ggaacgtggg gtgagctgca cgtcaccctg
     5161 ccccaagagt aaatacacac agtgcaggag cagcttgtca cttccaaaag actccagaaa
     5221 tgtcagctcc tccactcgga actttgctcc agagagagaa gtaaaatgag ctgaaattca
     5281 aacctgtcac gtcctcgaaa tcagggaacc tctcagaaga tcccttcatg ctccctcatt
     5341 ccccagactg caccgggaga agggcagagt gtatgcgttc agtgtgcaca gcttgtatgt
     5401 gtccttgtct ctcggcacat ctgtcgtgtg acagtctccc caaggctgag ggggtggcca
     5461 cccactctgc agctgtgaac tgctccacac tggggctact ggggtcatgt ggcattggga
     5521 aattggaatt aggaagcctc tgacccgtca gggaccatga atgagggagt tcgtcccatg
     5581 gtctgaccga tcatggctgg ctcctcagtg cactttccgc tcagccgctg ggggaatgtc
     5641 cacatctctg tggtagtacc tgttcgttct gtttgctgtt tgaatggcaa gtgcccagcc
     5701 tcagaagcac ttaattgtcg ccacagcagg cgctgatggt acacaaggaa ctgatgggcc
     5761 attctactga atggaacgca gtaggttaaa agcacagttt gaggaatgtt cacggaataa
     5821 gcccctaaaa gctgttagct tttccaggct ttgggttatg tacttttaat ttgattttag
     5881 agtttggaca ctttacatga atgtaattca gccaagaaac gtgttgctaa gatacaatcc
     5941 tcagtgttct ctgtatgtat atttatgtat ataccacatg ttacagcctg catgagcttc
     6001 ctcacaccga gcccagccgg aactgagcat gaaatgctgt cacatgtaga caaaggactg
     6061 agatgttctc aataaagact aagacgtttc actac
//
