LOCUS       XM_039098451            6576 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus adenosine deaminase, RNA-specific, B1
            (Adarb1), transcript variant X4, mRNA.
ACCESSION   XM_039098451
VERSION     XM_039098451.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098451.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6576
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6576
                     /gene="Adarb1"
                     /gene_synonym="Adar2; Red1"
                     /note="adenosine deaminase, RNA-specific, B1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 48 ESTs, 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     22 samples with support for all annotated introns"
                     /db_xref="GeneID:25367"
                     /db_xref="RGD:2033"
     CDS             535..2688
                     /gene="Adarb1"
                     /gene_synonym="Adar2; Red1"
                     /codon_start=1
                     /product="double-stranded RNA-specific editase 1 isoform
                     X3"
                     /protein_id="XP_038954379.1"
                     /db_xref="GeneID:25367"
                     /db_xref="RGD:2033"
                     /translation="MQLPIRTAFSRGWHDGSSSTDVKENRNLDNMPPKDSSTPGPGEG
                     IPLSNGGGGSTSRKRPLEEGSNGHSKYRLKKRRKTPGPVLPKNALMQLNEIKPGLQYM
                     LLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLA
                     MGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASP
                     VPASLTQPPLPIPPPFPPPSGKNPVMILNELRPGLKYDFLSESGESHAKSFVMSVVVD
                     GQFFEGSGRNKKLAKARAAQSALATVFNLHLDQTPSRQPVLSEGLQLHLPQVLADAVS
                     RLVLGKFSDLTDNFSSPHARRKVLSGVVMTTGTDVKDAKVISVSTGTKCINGEYMSDR
                     GLALNDCHAEIISRRSLLRFLYAQLELYLNNKEDQKKSIFQKSERGGFRLKDTVQFHL
                     YISTSPCGDARIFSPHEPVLEGMAPDSHQLTEPADRHPNRKARGQLRTKIESGEGTIP
                     VRSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGALLSIFVEPIYFSSIILGSL
                     YHGDHLSRAMYQRISNIEDLPPLYTLNKPLLSGISNAEARQPGKAPNFSVNWTVGDTA
                     IEVINATTGKDELGRPSRLCKHALYCRWMRVHGKVPPHLLRTKITKPTTYHESKLAAK
                     EYQAAKARLFTAFIKAGLGAWVEKPTEQDQFSFTP"
ORIGIN      
        1 tttcagacaa aagaggtctc cgccagtcaa gaagccctca aaagcatttt accatggata
       61 tagaagacga agagaatatg aaaacatgcc tctaggtgcc cgtctcataa tgccgtgtgg
      121 cttcatgtga agttgtggtc cttgtaataa agctctgaac ttgcgccact ctaaactcaa
      181 gaaaaccttt ccgattgact cagatgcccg gtcactggga taacggttca taaagctccc
      241 ctcagacaca gtcgctgctc ccgccttgga gggaagggag tccacatgat cttagtctga
      301 agactggacc gtgattggtg ccctcactgg ggctctttgc tctccagcgt cttccacggg
      361 gctgcgggta tggggcctcg ggcacaccca ccggcgtttt cctcccttgg cgttctctgt
      421 gagccaccag tcacttccgc ccaccctcag tcccagagag gagcaggtct aactgggaag
      481 ttgtctggaa gaaggcactt ttccagctca ggtgctctgg tctgaaggaa gaacatgcag
      541 ctgcccatca gaacggcatt ttccaggggg tggcatgatg gttccagcag cactgatgtt
      601 aaagaaaacc gcaatctgga caacatgccc cccaaggaca gcagcacacc cgggcctggc
      661 gagggtattc cgctctccaa cgggggtggt gggagcacca gcaggaagcg gcccctggag
      721 gagggcagca atggccactc caagtaccgc ctgaagaagc gaaggaaaac gccagggccc
      781 gttctaccca agaacgccct gatgcagctg aacgagatca aaccgggctt acagtacatg
      841 ctgctgtccc agacaggacc cgtgcacgca cctctgtttg tcatgtctgt ggaggtaaac
      901 gggcaggtct ttgaaggctc cggccctaca aagaagaagg caaagctgca tgctgctgag
      961 aaggccctgc ggtcttttgt ccagtttccc aacgcctctg aggcccacct ggccatggga
     1021 aggaccctct ccgtgaacac agacttcacg tccgaccagg cggacttccc cgacacgctc
     1081 ttcaatggct ttgagactcc agacaagtcg gagccaccct tctacgtagg ctccaatggg
     1141 gatgactcct tcagctcaag cggagacgtt agcctgtcag cctccccagt gcctgccagc
     1201 cttacccagc ctcctctgcc catcccacca ccattcccac ccccaagtgg gaagaacccc
     1261 gtgatgatct tgaatgagct gcgcccaggg ctgaagtatg acttcctctc cgagagtggg
     1321 gagagccacg ccaagagctt tgtcatgtcc gtggtggtag atggccagtt ctttgagggc
     1381 tcagggagaa acaagaagct tgccaaggcc cgggctgcac agtctgcctt ggctactgtc
     1441 ttcaatttgc acttggacca aacgccatct cgccagcctg tcctcagtga gggtctccag
     1501 ttgcatttgc cacaggtatt ggcagatgct gtctcacgcc tggtcctggg taagttcagt
     1561 gacctgacag acaacttttc ctcccctcac gcacgaagaa aagtgctctc tggagtagtg
     1621 atgaccacag gtacagatgt caaagatgcc aaggtgataa gtgtttcgac agggacgaag
     1681 tgcatcaacg gcgaatacat gagtgaccgt ggcctggctc tcaatgactg ccacgcagag
     1741 ataatctccc gaaggtccct gctcaggttt ctatacgcac agctcgagct ttacttaaat
     1801 aacaaagaag accagaaaaa gtccatattt cagaagtcag agcggggtgg gttccggctg
     1861 aaggataccg tgcagttcca cctgtacatc agcacctcac cctgcggaga cgccagaata
     1921 ttctctcccc atgagcccgt gctagagggt atggcgccag actcccacca gctgacagaa
     1981 ccggctgata gacatccgaa tcgcaaagca aggggacagc tgcggactaa aatagaatct
     2041 ggcgagggga caatccctgt gcgctcaaat gccagcatcc agacctggga tggggtgctg
     2101 cagggggaac ggctgctcac catgtcctgc agtgacaaga tagcacgctg gaacgtggtg
     2161 ggcatccagg gggccctgct cagcattttc gtggagccca tctacttctc cagcatcatc
     2221 ctgggcagcc tgtaccacgg ggaccacctc tccagggcca tgtaccagcg gatctccaac
     2281 atagaggacc tgccaccgct ctacaccctc aacaagcccc tgctcagcgg tatcagcaat
     2341 gcagaggcac ggcagccagg gaaggcaccc aacttcagtg tcaactggac ggtgggcgac
     2401 acggccattg aggtcatcaa tgccacaaca gggaaggatg agctaggccg cccctcccgc
     2461 ctgtgtaagc acgcgctgta ctgtcgctgg atgcgggtac acggaaaggt gcccccccac
     2521 ctgctgcgca ccaagatcac caagcccacc acctaccacg agtccaagct ggcagcgaag
     2581 gagtaccagg ctgccaaggc acgtctgttc actgccttca tcaaggcggg gctgggcgcc
     2641 tgggtggaga agcccacaga gcaggaccag ttctccttca ctccctgagc caggcggagt
     2701 cgagagcaca gagtgcgagg ctgtggtgcc gaactgtccc ccagagcctt gcgtctgacc
     2761 tgggacaggt gtgcacctcg gggacggcac ggggagtctg ggggaaccac tggacttcaa
     2821 gcatcatccc cggcgcctct caccacccag cagggcagtg tggggatgtg tagggtgctg
     2881 ggcacctcac atctgagtag ggatcaggtg cacagtgggg gtgcatgggg gcacaggggc
     2941 ccatcaccac cccttgccac acatttcccc tcttgagcta cccagtgacc gctttatatc
     3001 tcagtttaca ttagacattg agttctactg agtagggctt cctcaagtat aggaaaatag
     3061 aaatttactt tgtgtgagat tcttgaataa ataatttatt cagagctagg aatgagattt
     3121 ataaaataag aagtaattat gtcaggtcac ttttatgcca cattatttta attgcaaaag
     3181 aaaaaaaaag cgtttctatg tgaaagaaca caggaatcta gaggtaggaa gtagaagaga
     3241 gctaccgcgc acacctctgt gcgtggctcc tctccgtggg gccttcacac ttaggttctc
     3301 acagtaggtt ttaacagctc tcctggggtg accccagcat gatatggtgt gaccttggca
     3361 cacactggcc ctgcagctgg gatgctgtgt cctacagagc cgtgacctag gctctgctgc
     3421 ctctagaatc gtccatgctc ccggttaggc tcaaatcatg gaaaactcta tttgctacca
     3481 ggtaactgaa gacccaatct gtccgtagcc tgtcctggct ggccatcata cgggggtcct
     3541 aaccatcgag gttttgtgac ctagaggcac gcagtaggac tgctccacag tcagagcaca
     3601 gtcttccttc tgctcccccc ttgggatctg gtgggtagga accactgacc gctcagagag
     3661 cctcacggga tggaaagagt tgtgagcagg taccgtgctt ggagcgcgcc acctaaggcg
     3721 gattatccgg taccccttcc agcttcagac atgtttgaca agttaaacat tcaggttgaa
     3781 gctggtggga cagtgtgaac cttggaacgc tgcagaccag acattggtgt ctcgacaggc
     3841 aggcctgggt gctcctggta tcttggggct gaaccccaaa atgctgctga gcacccgtga
     3901 ggcacagggt ggcacccagg gccctggagc ggacacctgg acctcctgtg ctcagactcg
     3961 ccccaggtgc cttgttgctt ccactcagga ttagggagga gtagaggggg ggaggagggg
     4021 ctgtggctgt cagctcagtg tgctagcctg gtccagcagg ttgctctgaa gagcctcagg
     4081 gcctcgagca gagaaggtgc aggctcatcc cacagcacac atccaccacg gctgcatcca
     4141 gagctctgac agctatggcc ctgagctgtt cacccaggtg tgtgtgtgtg tccttgacac
     4201 acttgagaaa gagacagaat aagaacatag ccactgtggg ttccacctga ttcccagcag
     4261 acctcaagag gctgtgtgtc attgcttaag tgagacccac ttgtgtctcc gtgtcaggag
     4321 ccctgtcgtg tccttgtagg tgtctccgtg gttctcgtcc tgcggggctt gatcttcgag
     4381 gcatgaaggt cctagcagaa ctccctagtg acacatgcca tcttggatct cctcagatca
     4441 ccacctgccc ccctgaaagg gagccctccc aggctgcatt gcaggcccac cttcgggtga
     4501 aacgcattgg ggctccttag agaaacggtc tcattttacc ccagtaccac accttcccca
     4561 cagctcctgc actttctaga aagaaaaaca cacatgttgg tgtgctctta ctcttgtttt
     4621 taagtcgaat ttttcctaat ggagatgggg agatgattta gtttgttttt aagtacattt
     4681 tggttataaa gtatagcaaa agtatatccc atatacacca aaaaccatgc attacatcta
     4741 gctttccatg tcagataaca ggctgcccaa ccaggaagtg aaggttacat gtatagatca
     4801 tctgaaacta caggggctgg tcctgcttag acctgaccta ggcccagaaa ggagggggag
     4861 cctggaggca ccctgtggtg aggagccggc atgggacatg tgccaccttc ccctgcactc
     4921 aagacatggc agctcgaaca gcccaaatgt gaccagacaa aaaggaaaca aatattgatt
     4981 taagacataa gccctttgag cctcttccca aaggtcccca caatggtagt tcatgtccag
     5041 gacctaaatg tcacagactc agcagaaagc ttgacacacc aagagcctga tggaaatgtc
     5101 ttggctacct cagcaggtga agaacatgag tgtctgtgtt cagagcatgc agctaaacct
     5161 gaagttttaa gtccataccg cagtatccct caggattact cagaccgccg tcacagggct
     5221 gcagctacac agcaggaaga cattgtggcc gggagccttg gctgggctat cttgtttctg
     5281 cagagccgag actctccact tagatgtagg cagcgtgagt gtggcgtcca cgccgttagc
     5341 cactcatgat gtcaggaggt agcacgtctc ctagcgagag acaccaaaga acaactttaa
     5401 agctgaatct gagtctctca ccattctgtt tcgaagcttt tcctttagta attaaaacct
     5461 gtctaagagc gcaggccccc atcttgtaag gcattgctct ctgtttattt tatcacccag
     5521 ctcctcttgc ctccagactg tacgtgctgc ttggttttta aactttagtt tcagacaggt
     5581 gcaccagggg cgggcagcca ccagagggtc aggaacgtgg ggtgagctgc acgtcaccct
     5641 gccccaagag taaatacaca cagtgcagga gcagcttgtc acttccaaaa gactccagaa
     5701 atgtcagctc ctccactcgg aactttgctc cagagagaga agtaaaatga gctgaaattc
     5761 aaacctgtca cgtcctcgaa atcagggaac ctctcagaag atcccttcat gctccctcat
     5821 tccccagact gcaccgggag aagggcagag tgtatgcgtt cagtgtgcac agcttgtatg
     5881 tgtccttgtc tctcggcaca tctgtcgtgt gacagtctcc ccaaggctga gggggtggcc
     5941 acccactctg cagctgtgaa ctgctccaca ctggggctac tggggtcatg tggcattggg
     6001 aaattggaat taggaagcct ctgacccgtc agggaccatg aatgagggag ttcgtcccat
     6061 ggtctgaccg atcatggctg gctcctcagt gcactttccg ctcagccgct gggggaatgt
     6121 ccacatctct gtggtagtac ctgttcgttc tgtttgctgt ttgaatggca agtgcccagc
     6181 ctcagaagca cttaattgtc gccacagcag gcgctgatgg tacacaagga actgatgggc
     6241 cattctactg aatggaacgc agtaggttaa aagcacagtt tgaggaatgt tcacggaata
     6301 agcccctaaa agctgttagc ttttccaggc tttgggttat gtacttttaa tttgatttta
     6361 gagtttggac actttacatg aatgtaattc agccaagaaa cgtgttgcta agatacaatc
     6421 ctcagtgttc tctgtatgta tatttatgta tataccacat gttacagcct gcatgagctt
     6481 cctcacaccg agcccagccg gaactgagca tgaaatgctg tcacatgtag acaaaggact
     6541 gagatgttct caataaagac taagacgttt cactac
//
