LOCUS       XM_039079000            3090 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ADAMTS-like 5 (Adamtsl5), transcript
            variant X14, mRNA.
ACCESSION   XM_039079000
VERSION     XM_039079000.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039079000.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3090
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3090
                     /gene="Adamtsl5"
                     /gene_synonym="Thsd6"
                     /note="ADAMTS-like 5; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 9 ESTs, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 11 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:314626"
                     /db_xref="RGD:1305607"
     CDS             188..1879
                     /gene="Adamtsl5"
                     /gene_synonym="Thsd6"
                     /codon_start=1
                     /product="ADAMTS-like protein 5 isoform X11"
                     /protein_id="XP_038934928.1"
                     /db_xref="GeneID:314626"
                     /db_xref="RGD:1305607"
                     /translation="MAVHSDSADHCLLGTQCSLRPRLFPPLLFLLWILLSCDLRGAAQ
                     GPGEWTLWGSWSRCSSSCGRGVSVRRRHCVRLPEEELCWGDSHEYRVCQLPFYPSTFM
                     LTQDCPPGAIPFRDLQCSLYNGHPVLGTQKTYQWVPFHGAPNLCDLNCLAEGHAFYHS
                     FGRVLDGTPCTPGTQGLCVAGRCLSAGCDGLLGSGTLEDRCGLCGGANDSCLFVQRVF
                     RDAGDCPIPPHGLHLRSMVDRGPFNEFGSWEPRLLLIGQCVPVHPTTAHPCTCHRVPE
                     NLAALHPKLPPASGAFAGYWNVTLIPEGARHIRVTQRSHNHLALVTRDGHYVLNGDGV
                     LSLPGTYEAAGTRVVYTRSAGPEETLQATGPTSQELLLQVLLREPNPGVHFEFWLPRE
                     RYGSFQAQVHALGWPLRQPQPREVEPQPAETTVVPEAIPARVASLAPDPCGPCPDSRG
                     RAHRLLHYCGSDFVFQARVLGRHRLAQETRYEVRVLLIYKNRSPLRSREYVWAPGHCP
                     CPPLAPHREYLLATRRHVSPDGTQDRLLLPQAGYARLWSPAEDSRVRLAARRCPV"
ORIGIN      
        1 tgccttgggc tctgagcaac tgggtctcgg agactcacgg accgagttcc gcgagttttc
       61 actgcacaga tgaggaacct gaggcctgga aaaacggaat ggtcggttcc tggccaccca
      121 ggaagagaca agaggaccca gagaggtttg gctaccatcg aagaccacac agtcagccag
      181 ggctgagatg gcagttcact ccgattctgc tgatcactgc ctcttgggaa cccagtgctc
      241 cctcagaccc cgcctcttcc cgcctcttct gttcttgctg tggattctcc tgagctgtga
      301 tttgaggggt gctgctcagg gtccgggaga gtggacgctc tgggggtctt ggagccggtg
      361 ttccagctcg tgtggtcggg gcgtctcagt gcgcagacgc cactgcgtcc gacttcctga
      421 ggaggaactt tgctgggggg acagtcatga ataccgggtg tgccagctgc cgttttaccc
      481 atccaccttt atgctcaccc aggactgccc cccaggggcc ataccattcc gagacctgca
      541 gtgttctctc tacaatggcc accccgtcct gggcacccag aaaacctatc aatgggtgcc
      601 cttccacggg gcgcccaatc tgtgtgacct caactgcctg gctgaaggcc acgccttcta
      661 ccacagcttt ggccgcgtgc tggatggcac cccctgcacc ccggggaccc agggtctctg
      721 cgtggcaggc cgctgtctga gcgcaggctg tgacggacta ctgggctccg gcaccctcga
      781 ggaccgctgc ggcctctgtg gtggtgctaa cgactcttgc ctgttcgtgc agcgcgtgtt
      841 ccgcgacgcc ggtgactgcc ccatcccgcc tcacggcctg cacttgagga gcatggtgga
      901 caggggtccc tttaacgagt ttggctcctg ggagccaaga ctcttgctga ttggacagtg
      961 cgtcccagtg catcccacca cagcgcaccc ctgtacatgc caccgcgtcc cagaaaatct
     1021 tgccgcgcta caccccaaac tcccgcctgc ctcaggtgcc ttcgccggct actggaacgt
     1081 gactttgatc cccgagggcg ccaggcacat ccgcgtaaca cagcgcagcc acaaccacct
     1141 ggcgctggtg acccgcgacg ggcactacgt gctcaacggt gatggtgtgc tcagcctgcc
     1201 tggcacctat gaggccgcgg gcacccgcgt ggtttacacc cgcagtgcgg gtccggagga
     1261 gactctgcag gctaccgggc ccacctccca ggagctgttg ttgcaggtgc tgctgcggga
     1321 gcccaacccg ggcgtgcact tcgagttctg gctgccccga gagcgctatg gctccttcca
     1381 ggctcaggtg cacgctctgg gctggcccct gcgacagcct cagcctcggg aggtggagcc
     1441 gcagcctgca gagaccactg tggtccccga ggccatccct gcccgtgttg catccctggc
     1501 accagacccc tgcgggccat gccctgacag ccgtggtcgc gcacaccggc ttcttcacta
     1561 ctgtggcagc gactttgtgt tccaggcccg tgtgctgggc cgccaccgcc tggcccagga
     1621 gacccgctac gaggtgcggg tcctgctcat ctacaaaaac cgctcgcctc tgcgatctcg
     1681 agagtatgtg tgggcaccag gccactgccc atgcccacca ctggccccac atcgagaata
     1741 cctgttggct accaggcgac acgtcagccc tgatggcaca caggaccggc tactgctgcc
     1801 tcaggctggc tatgctcggc tttggagtcc tgcggaggac agccgagttc gactagctgc
     1861 ccggcgttgt ccagtgtaaa cccccacctc cggcggtcgg ggtcagcggg ttcctgttct
     1921 ggtgtcctat gactcaggaa agtctcccac ttggaagctc gtatatttta attcgggtct
     1981 ccctgtgcgc acaaccctgg ctggcctgga gctctctatg tagaccaggc tggccttgaa
     2041 gtcacagaga tccacctgcc tctgtctccc tagtgaattc tgggattaaa ggtgcactcc
     2101 atatctgaga actttaagga gcttcaagat cctgggctac ctttccttta aacaacttct
     2161 gtttgtctct tttcaaatta ctatttaagt tttacaaaaa catggaaaca aagaatgctg
     2221 ccttccccct cacgtgttga gctataggga ctccaagaca ctctaggagt ggcaggcact
     2281 gtgcagacat aagcccattc ccatcttttt ctgatctggc ccaacaccca acgcagtgcg
     2341 ctcattatga gaccaacaca agaagtctgg gaagttgggg tgcacaggaa ccgctggacc
     2401 tccattcctc tatgcaatgg gttcatttgc gcctttgtct atcatgggtg tctgtcctat
     2461 agccacacag caagctatcc ccagtggggt gtcctttaag gctatcccct ctgggttctg
     2521 aatctgtcac gtggtctaac cagttgcctc gcccctctgc ctcagttctc atctctgcct
     2581 gtggacactt agttctccaa tgaacagcta ttgagcaccg actgtatgtg aaagacccgg
     2641 cggtccaggg aggtgcagtg ctgtgccagg ataagcaggg gtcactttgt ctaacagggc
     2701 tttctatggt gcccaagagc tccccccaaa ccccacagtg tagctccaca gggacctgtg
     2761 gagtccttgc gccccctggt ggctggccgt ggattcccag gttgggagat ggtctgcagc
     2821 aggcttcagg gacttcactc agctataatg gcggccaatg tgacactaga gaccaggaca
     2881 gggtcatccc tgacagggtt cctgtgctga gcctcataaa caaggtggaa gttaagaggt
     2941 ggtggcacat gactttaccc cagcaccagg gaggcagagg cagatagatt tctgtgagtt
     3001 cgaagccagc ctggtctaca gagtgaatta caggacagtc agtgccatac agaaaaacct
     3061 ggcctttaaa aaaacaaaat caaaacaaaa
//
