LOCUS       XM_039078989            3332 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus ADAMTS-like 5 (Adamtsl5), transcript
            variant X4, mRNA.
ACCESSION   XM_039078989
VERSION     XM_039078989.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086025) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3332
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3332
                     /gene="Adamtsl5"
                     /gene_synonym="Thsd6"
                     /note="ADAMTS-like 5; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 7 ESTs, 12 long SRA
                     reads"
                     /db_xref="GeneID:314626"
                     /db_xref="RGD:1305607"
     CDS             142..2121
                     /gene="Adamtsl5"
                     /gene_synonym="Thsd6"
                     /codon_start=1
                     /product="ADAMTS-like protein 5 isoform X3"
                     /protein_id="XP_038934917.1"
                     /db_xref="GeneID:314626"
                     /db_xref="RGD:1305607"
                     /translation="MRNLRPGKTEWSVPGHPGSKHRRSWRDLWVQDVTLLFKRTHDWF
                     QAPMPCCEQLELSLAQRESVHLASCRAALRAQTRGPREVWLPSKTTQSARAEMAVHSD
                     SADHCLLGTQCSLRPRLFPPLLFLLWILLSCDLRGAAQGPGEWTLWGSWSRCSSSCGR
                     GVSVRRRHCVRLPEEELCWGDSHEYRVCQLPFYPSTFMLTQDCPPGAIPFRDLQCSLY
                     NGHPVLGTQKTYQWVPFHGAPNLCDLNCLAEGHAFYHSFGRVLDGTPCTPGTQGLCVA
                     GRCLSAGCDGLLGSGTLEDRCGLCGGANDSCLFVQRVFRDAGDCPIPPHGLHLRSMVD
                     RGPFNEFGSWEPRLLLIGQCVPVHPTTAHPCTCHRVPENLAALHPKLPPASGAFAGYW
                     NVTLIPEGARHIRVTQRSHNHLALVTRDGHYVLNGDGVLSLPGTYEAAGTRVVYTRSA
                     GPEETLQATGPTSQELLLQVLLREPNPGVHFEFWLPRERYGSFQAQVHALGWPLRQPQ
                     PREVEPQPAETTVVPEAIPARVASLAPDPCGPCPDSRGRAHRLLHYCGSDFVFQARVL
                     GRHRLAQETRYEVRVLLIYKNRSPLRSREYVWAPGHCPCPPLAPHREYLLATRRHVSP
                     DGTQDRLLLPQAGYARLWSPAEDSRVRLAARRCPV"
     polyA_site      3332
                     /gene="Adamtsl5"
                     /gene_synonym="Thsd6"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ttggccttcc ttaccccttc ctcggaccct ctgggcaccg cagcccgcac tcctggctga
       61 tgagaccatg acgcacatgt tggcaggagg ccagggtctc ggagactcac ggaccgagtt
      121 ccgcgagttt tcactgcaca gatgaggaac ctgaggcctg gaaaaacgga atggtcggtt
      181 cctggccacc caggaagtaa acacaggagg agctggagag atctctgggt tcaagatgtc
      241 accttgctct ttaagagaac ccacgactgg ttccaagcac ccatgccgtg ttgtgagcaa
      301 ctggaactca gcttagctca aagggagtca gtgcacctgg catcttgtcg cgctgcccta
      361 cgcgcacaga caagaggacc cagagaggtt tggctaccat cgaagaccac acagtcagcc
      421 agggctgaga tggcagttca ctccgattct gctgatcact gcctcttggg aacccagtgc
      481 tccctcagac cccgcctctt cccgcctctt ctgttcttgc tgtggattct cctgagctgt
      541 gatttgaggg gtgctgctca gggtccggga gagtggacgc tctgggggtc ttggagccgg
      601 tgttccagct cgtgtggtcg gggcgtctca gtgcgcagac gccactgcgt ccgacttcct
      661 gaggaggaac tttgctgggg ggacagtcat gaataccggg tgtgccagct gccgttttac
      721 ccatccacct ttatgctcac ccaggactgc cccccagggg ccataccatt ccgagacctg
      781 cagtgttctc tctacaatgg ccaccccgtc ctgggcaccc agaaaaccta tcaatgggtg
      841 cccttccacg gggcgcccaa tctgtgtgac ctcaactgcc tggctgaagg ccacgccttc
      901 taccacagct ttggccgcgt gctggatggc accccctgca ccccggggac ccagggtctc
      961 tgcgtggcag gccgctgtct gagcgcaggc tgtgacggac tactgggctc cggcaccctc
     1021 gaggaccgct gcggcctctg tggtggtgct aacgactctt gcctgttcgt gcagcgcgtg
     1081 ttccgcgacg ccggtgactg ccccatcccg cctcacggcc tgcacttgag gagcatggtg
     1141 gacaggggtc cctttaacga gtttggctcc tgggagccaa gactcttgct gattggacag
     1201 tgcgtcccag tgcatcccac cacagcgcac ccctgtacat gccaccgcgt cccagaaaat
     1261 cttgccgcgc tacaccccaa actcccgcct gcctcaggtg ccttcgccgg ctactggaac
     1321 gtgactttga tccccgaggg cgccaggcac atccgcgtaa cacagcgcag ccacaaccac
     1381 ctggcgctgg tgacccgcga cgggcactac gtgctcaacg gtgatggtgt gctcagcctg
     1441 cctggcacct atgaggccgc gggcacccgc gtggtttaca cccgcagtgc gggtccggag
     1501 gagactctgc aggctaccgg gcccacctcc caggagctgt tgttgcaggt gctgctgcgg
     1561 gagcccaacc cgggcgtgca cttcgagttc tggctgcccc gagagcgcta tggctccttc
     1621 caggctcagg tgcacgctct gggctggccc ctgcgacagc ctcagcctcg ggaggtggag
     1681 ccgcagcctg cagagaccac tgtggtcccc gaggccatcc ctgcccgtgt tgcatccctg
     1741 gcaccagacc cctgcgggcc atgccctgac agccgtggtc gcgcacaccg gcttcttcac
     1801 tactgtggca gcgactttgt gttccaggcc cgtgtgctgg gccgccaccg cctggcccag
     1861 gagacccgct acgaggtgcg ggtcctgctc atctacaaaa accgctcgcc tctgcgatct
     1921 cgagagtatg tgtgggcacc aggccactgc ccatgcccac cactggcccc acatcgagaa
     1981 tacctgttgg ctaccaggcg acacgtcagc cctgatggca cacaggaccg gctactgctg
     2041 cctcaggctg gctatgctcg gctttggagt cctgcggagg acagccgagt tcgactagct
     2101 gcccggcgtt gtccagtgta aacccccacc tccggcggtc ggggtcagcg ggttcctgtt
     2161 ctggtgtcct atgactcagg aaagtctccc acttggaagc tcgtatattt taattcgggt
     2221 ctccctgtgc gcacaaccct ggctggcctg gagctctcta tgtagaccag gctggccttg
     2281 aagtcacaga gatccacctg cctctgtctc cctagtgaat tctgggatta aaggtgcact
     2341 ccatatctga gaactttaag gagcttcaag atcctgggct acctttcctt taaacaactt
     2401 ctgtttgtct cttttcaaat tactatttaa gttttacaaa aacatggaaa caaagaatgc
     2461 tgccttcccc ctcacgtgtt gagctatagg gactccaaga cactctagga gtggcaggca
     2521 ctgtgcagac ataagcccat tcccatcttt ttctgatctg gcccaacacc caacgcagtg
     2581 cgctcattat gagaccaaca caagaagtct gggaagttgg ggtgcacagg aaccgctgga
     2641 cctccattcc tctatgcaat gggttcattt gcgcctttgt ctatcatggg tgtctgtcct
     2701 atagccacac agcaagctat ccccagtggg gtgtccttta aggctatccc ctctgggttc
     2761 tgaatctgtc acgtggtcta accagttgcc tcgcccctct gcctcagttc tcatctctgc
     2821 ctgtggacac ttagttctcc aatgaacagc tattgagcac cgactgtatg tgaaagaccc
     2881 ggcggtccag ggaggtgcag tgctgtgcca ggataagcag gggtcacttt gtctaacagg
     2941 gctttctatg gtgcccaaga gctcccccca aaccccacag tgtagctcca cagggacctg
     3001 tggagtcctt gcgccccctg gtggctggcc gtggattccc aggttgggag atggtctgca
     3061 gcaggcttca gggacttcac tcagctataa tggcggccaa tgtgacacta gagaccagga
     3121 cagggtcatc cctgacaggg ttcctgtgct gagcctcata aacaaggtgg aagttaagag
     3181 gtggtggcac atgactttac cccagcacca gggaggcaga ggcagataga tttctgtgag
     3241 ttcgaagcca gcctggtcta cagagtgaat tacaggacag tcagtgccat acagaaaaac
     3301 ctggccttta aaaaaacaaa atcaaaacaa aa
//
