LOCUS       XM_039102364            3803 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ADAMTS-like 4 (Adamtsl4), transcript
            variant X7, mRNA.
ACCESSION   XM_039102364
VERSION     XM_039102364.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039102364.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3803
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3803
                     /gene="Adamtsl4"
                     /gene_synonym="Tsrc1"
                     /note="ADAMTS-like 4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 23 ESTs, 2 long SRA
                     reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:310670"
                     /db_xref="RGD:1561012"
     CDS             135..3242
                     /gene="Adamtsl4"
                     /gene_synonym="Tsrc1"
                     /codon_start=1
                     /product="ADAMTS-like protein 4 isoform X1"
                     /protein_id="XP_038958292.1"
                     /db_xref="GeneID:310670"
                     /db_xref="RGD:1561012"
                     /translation="MELWLGRLWLYVMLLLLLLQLCQDQEVSPGQLLGPSLQTPSEED
                     QVPEGLWGPWGRWASCSQPCGVGVQRRSRTCELHPALSLPPRPPRHPEAPQPRGQGSR
                     PQTPRDPQSLYRPQPRGRGGPLRGPASQVGREETQEPRGAQRFRVRDPIKPGMFGYGR
                     VPFALPLHRSRRLAHKPGQPKDSSTAEETLPSQPPSTEPASEKHSPHMQPPELRAQSR
                     SPSAETPRSGTAQTEVPSRTSSAPSDMGIPAPTSSFRDSRSFQGSPEPRMPTSQGAER
                     QPHPFSPVTRSQLSRRHWRPPGSPHRSPDGWLPLTRDSSPHWSLFAPSSPTPECSGES
                     EQMRACSQEPCPPEQPDPRALQCAAFDSQEFMGQLYQWEPFTEVQGSQRCELNCRPRG
                     FRFYVRHTEKVQDGTLCQPGSLDICVAGHCLSPGCDGILGSGRRPDGCGVCGGDGSTC
                     RLVSGNLTDRGGPLGYQKILWIPAGASHLRISQFRPSSNYLALRGPGGRSIINGNWAV
                     DPPGSYAAVGTVFQYNRPPREEGKGETLSAEGPTTQPVDVYMIFQEDNPGVFYQYVTS
                     AAPESPSTMPPALQLQPEMLRGEPLLPSAPRPVRAPGTLQRQARIPQVPPPTHVRTAM
                     GSSAGYWKQVGHSECSASCGKGVWRPIFLCVSRESGEELDEQSCAVGARPPASPESCH
                     RPPCPPYWEAGEWTSCSRSCGPGTQHRQLLCRQEFGGGGSSVPPERCGHLPRPNITQS
                     CQLRLCGHWEISSPWSQCSVRCGRGQRSRQVRCVGSNGHEVGKQECASGPPPPPSREA
                     CDMGPCTTAWFYSDWSSKCSAECGTGIQRRAVVCLRSGETLQGDPEAGSTEQGCPLRS
                     RPPDMRACSLGPCEKTWRWYTGPWSECSSECGSGTQHRDIICVSKLGTKFNVTSPSNC
                     SHLPRPPALQPCQGQACEDQWFSTLWSPCSQSCQGGVQTREVQCLSSNHTLSSRCPPH
                     LRPSRKRPCNSQPCNQRPDDQCKDSSPHCPLVVQARLCVYPYYTATCCRSCAHVLEQS
                     QLEPA"
ORIGIN      
        1 gggggagaag agaggagcag agggaggtgg agaggggacc cgcatcggac aagagacaga
       61 gcaccctcca tccctgatgc cagagtagct accctgtccc ttctccccag cccaggggca
      121 gtcacaggaa gagcatggag ctttggctgg gcaggctctg gctgtatgtc atgctgctct
      181 tgcttctcct tcagctctgc caggatcagg aggtgagccc aggacaactg ttgggtcctt
      241 ctcttcagac accatcagag gaggaccagg tccctgaggg tctctgggga ccttggggcc
      301 gatgggcctc ctgctcccag ccctgtgggg tgggggtgca gcgccggagc cgaacatgtg
      361 aactgcaccc agccctgtcc ctccctcccc gacccccaag acatccagaa gccccccagc
      421 cccggggcca gggttccaga ccccagactc cacgggatcc ccagtccctg tataggccac
      481 agcctcgggg aaggggtggc cctcttcgag gtcctgcttc tcaagtgggg agagaggaga
      541 cccaggagcc tcggggggcc cagaggttcc gtgttcgaga ccctatcaag ccagggatgt
      601 tcggttacgg gcgagtgccc tttgctttgc ccctgcaccg gagccgcagg cttgctcaca
      661 aacctggaca gcccaaggac tcctctacag cggaagagac acttccatcc cagcctccaa
      721 gcacagaacc agcctctgaa aagcacagcc cccacatgca gccccctgaa ctgcgtgccc
      781 aatcccgttc cccctcagct gaaactccaa ggtctggaac tgctcagaca gaagtgccct
      841 ccagaaccag ttctgctccc tccgacatgg gtatccctgc acccacttcc tcctttagag
      901 acagtaggtc tttccaggga tcccctgagc cacgaatgcc aacttcccag ggagcagagc
      961 gacagccaca tcctttctct cctgtcaccc ggagccagct gagccggagg cactggagac
     1021 ctccggggag tcctcacagg tccccagatg gctggctgcc tctgacaagg gactccagcc
     1081 cacactggag cctctttgct cccagtagcc ccactccaga atgttctggg gaaagtgaac
     1141 agatgagagc ctgcagccaa gagccttgcc cccctgagca gccagacccc agggccctgc
     1201 agtgtgccgc ctttgactcc caggaattca tgggccagct gtaccagtgg gagcccttca
     1261 ccgaagttca aggctcccag cgctgtgaac tgaactgccg cccccgtggc ttccgatttt
     1321 atgtccgtca cactgaaaag gtgcaggatg ggaccctgtg tcagcctgga tccctagaca
     1381 tttgtgtggc tggacactgc ctgagccccg gctgtgatgg gatccttggc tctggcaggc
     1441 gtccggatgg ctgtggagtc tgtgggggtg acggctctac ctgccgtctc gtttcgggga
     1501 atctcactga ccgagggggc cccttgggct atcagaagat cctgtggatt cctgcgggag
     1561 cctcccatct tcgcatttcc cagttccgac ccagttccaa ttaccttgca cttcgagggc
     1621 ctggtggccg ctccattatc aatgggaact gggctgtaga tcctccagga tcctacgcgg
     1681 ccgtcgggac cgtcttccag tataaccgtc ctcctcggga ggagggcaag ggggagactc
     1741 tgtcagcaga aggccctacc acccagcctg tggatgtcta tatgatcttt caagaggaca
     1801 acccaggtgt cttctatcag tatgtcacct ctgcagcccc agagagccct tccacaatgc
     1861 ctccagccct tcagcttcag cctgagatgc tgagggggga gcccttactc ccttcagccc
     1921 cccgcccagt tcgggcacca ggcaccctcc agcgtcaggc acggattccc caagtgcctc
     1981 ctccgactca tgtcaggacg gccatgggat cttcggctgg gtactggaag caggtggggc
     2041 actctgaatg ttcagcatcc tgtggcaaag gtgtttggcg ccccatcttc ctctgcgttt
     2101 cccgtgagtc aggagaagag ttggatgaac agagctgtgc cgtgggggcc agacccccag
     2161 cttcccctga atcctgccat agaccaccgt gtcccccata ctgggaggct ggcgagtgga
     2221 cgtcctgcag ccgctcctgt ggccctggca cccagcatcg ccagctgctc tgcagacagg
     2281 aattcggagg cggtggctcc tcagtgcctc cagagcgttg cggacatctc ccccggccca
     2341 acatcaccca gtcctgtcag ctgcgccttt gtggccactg ggagattagc tccccctgga
     2401 gccagtgctc tgtgcgctgt ggtcgtggtc agaggagccg gcaagtgcgg tgtgttggaa
     2461 gtaatggcca tgaggtgggc aagcaggagt gtgcttccgg gcccccgcca cctcccagca
     2521 gagaggcctg tgacatgggc ccctgtacca cagcctggtt ctacagtgac tggagttcca
     2581 agtgctcagc cgagtgtggg acaggcatcc agagacgcgc tgtggtctgc cttaggagtg
     2641 gggagaccct tcagggggac ccagaagcag gaagcactga gcagggttgc cctctcagaa
     2701 gccgccctcc tgacatgcgt gcttgcagtt tagggccctg tgaaaagaca tggcgctggt
     2761 acaccgggcc ctggagtgag tgctcctctg agtgtgggtc tggcacacag cacagagaca
     2821 ttatctgtgt atccaaactg gggaccaaat tcaatgtgac ttctcccagc aactgctccc
     2881 acctacccag gcctcctgcc ctgcagccct gtcagggcca ggcctgtgag gaccaatggt
     2941 tctctactct ctggagtccg tgttctcaat cctgtcaagg aggtgtgcag acgagggaag
     3001 tccagtgcct gagtagcaac cacactctca gctcccgatg tcctccgcac ctgcgacctt
     3061 ctaggaagcg gccctgtaac agccaaccct gcaaccagcg accagatgac caatgcaagg
     3121 acagttctcc acattgcccc ctggtggtac aggcacggct ctgcgtctac ccctactaca
     3181 cagctacctg ctgccgctcc tgtgcccatg tcctggagca gtcccaactg gagcctgctt
     3241 gaaatgggtc caagagaccc ctctcttatg gttttctcgc gccacccatt gagatagccc
     3301 aaggagtgta cctgtccgac ctgggtgttt gccccctgtg aacgtttatc acttcctcag
     3361 aagcaccctg agaaagaatt aggaagtgga cagggctggc ttctctcatg cttttctggg
     3421 ctggggagaa agcaaggtta tatttccaca ctaatctgag atacatggag agtgtgtgtc
     3481 cccagaagtt ccagttctgt gccccaatcc tcacaaccac gtcaggcggc acatctaact
     3541 tatcttgttc ctatccctgc ctcatctagt ctctgtattc ctaccaccca gattagcagg
     3601 ggtgggggtc agccactgct accctacctt acccgaccga gaaggaccac acctctccag
     3661 tgtagcgatc agttgtgtcg tgggtggaaa tgagaaacat cagcataaga caccctagcc
     3721 ccagccctca cttcacactg aaaatgatgc ccaccccaga agtaatttat tttttattaa
     3781 agttgattgt gacaaataag aaa
//
