LOCUS       XM_039081019            6785 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus ADAM metallopeptidase with
            thrombospondin type 1 motif, 15 (Adamts15), transcript variant X2,
            mRNA.
ACCESSION   XM_039081019
VERSION     XM_039081019.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086026) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6785
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..6785
                     /gene="Adamts15"
                     /note="ADAM metallopeptidase with thrombospondin type 1
                     motif, 15; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 23 long SRA reads, 1 Protein"
                     /db_xref="GeneID:300474"
                     /db_xref="RGD:1309770"
     CDS             2035..3894
                     /gene="Adamts15"
                     /codon_start=1
                     /product="A disintegrin and metalloproteinase with
                     thrombospondin motifs 15 isoform X1"
                     /protein_id="XP_038936947.1"
                     /db_xref="GeneID:300474"
                     /db_xref="RGD:1309770"
                     /translation="MADVGTMCDPKRSCSVIEDDGLPSAFTTAHELGHVFNMPHDNVK
                     VCEEVFGKLRANHMMSPTLIQIDRANPWSACSAAIITDFLDSGHGDCLLDQPSKPITL
                     PEDLPGTSYSLSQQCELAFGVGSKPCPYMQYCTKLWCTGKAKGQMVCQTRHFPWADGT
                     SCGEGKFCLKGACVERHNPNKYRVDGSWAKWEPYGPCSRTCGGGVQLARRQCSNPTPA
                     NGGKYCEGVRVKYRSCNLEPCPSSASGKSFREEQCEAFNGYNHSTNRLTLAVAWVPKY
                     SGVSPRDKCKLICRANGTGYFYVLAPKVVDGTLCTPDSTSVCVQGKCIKAGCDGNLGS
                     KKKFDKCGVCGGDNKSCKRVTGLFTKPMHGYNFVVAIPAGASSIDIRQRGYKGLIGDD
                     NYLALKNSQGKYLLNGHFVVSAVERDLVVKGSVLRYSGTGTAVESLQASRPILEPLTV
                     EVLSVGKMTPPRVRYSFYLPKEPREDKSSRPKDPRGPPVLRNSVLSLSNQVEQPDNRP
                     PARWVAGNWGPCSVSCGSGLQKRAVDCRDSPGQQGISACDVDHRPVEKRACGEPCPTW
                     ELGNWSPCSKSCGRGFKRRPLKCVGHGGRLLARDQCDLRRKPQELDFCVLRPC"
     polyA_site      6785
                     /gene="Adamts15"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gactgggaat cctggattga gatggagggg atcatggcaa tagtttgtga gttgctgtga
       61 aaggccagac ttgagtatac gctccaccgc cgcttttccc tacatccttt tctgttgggc
      121 cttgtccata ggattcctag cgcgcagtct cggaaggcca cctgttggaa ctggagccat
      181 ttcacttgga gcttcactta gaattgagct ggggaaactg cctttcagtt ttctctgatc
      241 cttgttagta gatggtgacc tgttcaccta gctgtgttct aagcagtaga gcaggtaaga
      301 gtgcttacgc tttagtccga agaccctccg tcgagggcag gacttctgct ctgcccttgt
      361 gcaaggtggt gtgagcctag tcgagagtat ttggacagtc cagctgcagg cttgggaaga
      421 tgggactaga gacagatcta gatgtgggaa gagagccctg ccttcctagc gtctttagca
      481 gatcttctat ctcaagaagc tattaacctg tgaacattta gatccctaaa tgttcaccta
      541 aaagttgggt gctgtgaaga tctggattcc tgaaattctt tagacgctgg agaagagtca
      601 tccaaatgcc ctgctttctc tgattttgga gctgtgattt gaatccctgc agcatccttg
      661 tttttattta ttttttatca tcagaaccac ggcattctgg ccaccgtaca gggttctttg
      721 ttacctccat ggctctcagt ctccttgttt ctaaacggcc acttagagtt ggtctggcgc
      781 ccacgagctg gagccggagt cttccacagt aacccatttg gcacggctag tcctttcttg
      841 cgctggaact tcctcctttc ccagcctctt ctcctcccac cacctggttt ctctagggag
      901 gtctttggcc cgagccttgt ttccttgtgc tcattcttcc aactgaggtc tgttgagcgg
      961 ccgcagcccc agccctagaa gccctgcttg agtcacgggg aaactgcgga agaggcttca
     1021 gcttctgcac ccaggttgct gggagaaaaa gcaaaggcca aggacaggat atcttaatga
     1081 gtgaagcagc tgctgtccct tccgctacct gagatgaccc tgtggaggtc actccctggc
     1141 tctagagtat cagagctcag tccagttaag gctgactttt ggagcccacc ccgagaagag
     1201 cccccgctgg gaaagtaggc cgctccatca gaagaggtgg tctttctgaa gaagcaatca
     1261 aacagcatgg cagcttctgt ttctcagtgg tggtccccca gtgggccatg tcatctgagc
     1321 atagtgggta aaagcagcac ggccacttgg gtcaggagcg gtgatgtgtg gatgtgagtg
     1381 tgagaagctg gttttctctt aggtatttag agggtaaagc tagagggtca tcaaggttcc
     1441 agtgtcaagc ttggataaac agctcctccc ccacctcctc accagctcgg attttggggc
     1501 ctgccgtgct ctcagagtcc taggaacatc tcattcctga ggcacaaccc ctcctcccac
     1561 aaatctcccc ggggaaggta cagtattgga tgagaacacg ggcaaacagc tgttctttct
     1621 agaccaagac aaatgtggtc tccaggaacc ttagctgtcc ggaagagaga atacattgat
     1681 catacagcaa gtgttttgac aattggaaga gtttctgtaa ggattcagaa taagctcgtg
     1741 gacaaagaga gcacatctga ttttgcaaag cagccagcat ccaggctcct aacagcaggg
     1801 tgaggtcagc ccaggaacag atcgagccag agtccttctc atttatgtct gcgaagagtg
     1861 cgacttctct ggcttctcct tgcatggggg ctgcagatgc caggtaccat tctggctgga
     1921 gctgttcatt ctaagaaggt gtggcccaag ccctcgtagg aactgtcagt gtgaccaaga
     1981 gctgtcaatc acagcataga cctatgcggg gctaccacct gtgacacctt gggcatggct
     2041 gatgtgggca ccatgtgtga tcccaagaga agctgctctg tcatcgagga cgatgggctt
     2101 ccgtcggcct tcaccactgc ccatgagctg ggccatgtgt tcaacatgcc ccatgacaac
     2161 gtgaaggtgt gtgaggaggt gtttgggaag ctcagagcca accacatgat gtctccgaca
     2221 ctcatccaga tcgaccgtgc caacccctgg tcagcctgca gtgctgccat tatcaccgac
     2281 ttcctggaca gcgggcacgg tgactgcctc ctggaccagc ccagcaagcc catcaccctg
     2341 cctgaggacc tgccaggcac aagctacagt ttgagccaac agtgcgagct ggcctttggg
     2401 gtgggctcta agccctgccc atatatgcag tactgtacaa agctgtggtg caccggcaag
     2461 gccaaggggc agatggtgtg ccagactcgc cacttcccct gggcagatgg caccagctgt
     2521 ggtgagggca agttctgcct caagggagcc tgcgtggaga gacacaaccc aaacaagtac
     2581 cgggtggacg gctcttgggc caagtgggag ccttatggtc cctgctcgcg cacctgcggt
     2641 gggggcgtgc agctggcccg gaggcagtgc agcaacccta cccctgccaa cggcgggaag
     2701 tactgcgagg gagtgagagt gaaataccga tcttgcaact tggagccctg ccccagctca
     2761 gcctctggca agagcttccg ggaagagcag tgtgaggctt tcaatggcta caaccacagt
     2821 accaacaggc tcactttagc tgtggcatgg gtacccaagt actccggcgt gtcaccacgt
     2881 gacaagtgta agctcatctg ccgagccaat ggtactggct acttctatgt gctagcacct
     2941 aaggtggtgg atggtacgct gtgtactccc gactccacct cggtctgtgt ccaaggcaag
     3001 tgcatcaagg ctggctgtga tgggaacctg ggctccaaga agaaatttga caaatgtggc
     3061 gtgtgtggtg gagacaataa gagctgcaag agggtgacag gactcttcac caagcctatg
     3121 cacggctaca attttgtagt ggccatccct gcaggcgcct ccagcattga catccgccag
     3181 cgtggttaca aggggctcat tggggatgac aactatctgg ccctgaagaa cagccaaggc
     3241 aaatacctgc tcaatgggca ctttgtggta tctgctgtag agagggacct ggtggtaaag
     3301 ggcagtgtgc tacgctatag tggcactggc actgcggtgg agagcctgca ggcgtctcga
     3361 cccatcctgg agccactaac cgtggaggtc ctgtccgtgg ggaagatgac accgccccgt
     3421 gtacgttatt ccttctatct gcccaaagag cctcgggagg acaaatcctc tcgccccaag
     3481 gaccctcggg gtcccccagt gttgcgcaac agtgttctca gcctttccaa ccaagtagag
     3541 cagccagaca acaggcctcc tgcgcgctgg gtggcaggca actgggggcc ttgctcggtg
     3601 agctgtggca gtggcctaca gaagcgagca gtggactgcc gggactcccc agggcagcaa
     3661 ggaatctctg cttgtgatgt agaccatcgg ccagtggaga agcgagcctg tggtgagccc
     3721 tgcccaacct gggagctcgg caactggtcg ccctgttcta agagctgtgg ccgtggattt
     3781 aagaggcgtc cgctcaagtg tgtgggccat ggaggcaggc tgctggctcg ggaccagtgt
     3841 gacctacgcc gcaagcccca ggaattagac ttctgtgtct tgagaccctg ctgaggggta
     3901 ctgtttcttc tactcctcta ttctaaaccc gctgctgtgc tggtgctgtg gtcagctgga
     3961 gcagaggaca gcggccagtg gtctgtgtca cagtgtcact cacatccaga atgaggacca
     4021 tgggtctggg cgagaggttc cttcctcctt ggactcggca gggggaagct aactaatgca
     4081 cagtctacct catgccctgc tcctcgggcc cagttgtggg gagaggcttc aagagatggg
     4141 tgctgggcag aaggtgctga aggccagctt ccaaggaacc tggaagttgg gtgccttcca
     4201 ggcagaactt cagggacctt ggcccccata atggaggtca caggctgctg gaagagccat
     4261 ggcctgcagc ttggcaccct caggtgatcc caggagctct gagcagtccc tgaacaaggc
     4321 aggggtctgg tggtgatttc caccttcttt gttttttgac tgatgtggac ctaacagtaa
     4381 aactgttcag gggttactag aagccaaagg gacaatgaga ttgggttcat ttgggcgcaa
     4441 ctttcctgtt tgctcatctt cagtcttgat cctccttgga agatcagcac tttgtaatct
     4501 ggatggccag ggcattagac cagctgggga agcctcgttg tggcccctga tgctttgaag
     4561 gcagcccgag aaactacagg gaccatttgt tggtcaagag agagcaacta tgtcaaacag
     4621 atacttgtca tgtcaaaggg gaaatgattt ggtggctgaa gcaaggaaca aaaaagctta
     4681 gagggctctt ctctcagtag ggttagaggg tggaggtgtt gaccttcaag aatgtcatcc
     4741 tgggatagcg aaaaggagtt ctgacacttt tgtcatctag cgaggaacat gtaaggaggc
     4801 tgatgatgcc ctagtgacct tccaaagtga ccatagccct gtacccactg agggggagtg
     4861 gtggtgcctg ggagtgtgag gtgctgagtg tccacgtgct ggcaggtcag cattccgctc
     4921 gctcgggcgg ctcctgctgt ctcctgtggg catgctacat tacatctccc agccttcatc
     4981 tctctggtag gtaaacgggg ctcattgttt gctacctcag atcacgctct ctaggacaga
     5041 agaaacctgg tgcttctacc agtctcagct ggatgtgccc aaccataaag atgggtttgt
     5101 gtgtggcttt cctgcttccc acagcctggc tatcatctgg ggccctaaat acgaagacag
     5161 gagtcaggta gagtgtcttt ttccctcagg ttccttggga tcaggtctta ggaaacgcta
     5221 agagtcaata ccctgacctt gagacactcg gaagccaccg gttgggacta ctggagaccc
     5281 atctgtcatc cttgtagaca tgacagtgaa atagaaatcc aggcatttct tatagcaggg
     5341 tatttttttt gaagacctgg aagctccagt gtatacaggg catcttcaaa gaatcagcag
     5401 tgcatccagg acctcagtgg agggttagat ggagacgaga ccaaaaccct tgtcttcaca
     5461 tggaggatag cagtctttgt caatcctttt acatgtttcc agggagtcaa aatccacaca
     5521 gcagccagtg ggcctgtttt gcccctagag cagtagttct caacctccta atgttgcaac
     5581 ctttaataca gttcctcatg ttgtggtgac cctcaaccat aaaagtattt tcattgttac
     5641 ttcataactc attttgctac tgttatgaat cttaacgtaa atttctgtgt tttccgatgg
     5701 tcttagtcaa cccctgtgaa aaggttgatt gtcctccaaa ggggccgcat gacccacagg
     5761 ttgagaacta ctactctaga ctgttattct aaccctgctc tgtctctggg ctggagacct
     5821 aggacagagc tcctacagtg ggcgaagggc atgtgaccct ttgaggctgg gctgtgaagg
     5881 acagcattgg ggtgggtggg ggtggggtgg gaggaatgag tacttcagag ctgtagagac
     5941 aaaaggtccc caaggcctga ggctaaaggg gagccttgct agctgaggag agcatggtac
     6001 ccagtgcttg gtgcattctt tccctgtgag gagaggtagt gctgggctgg gtagaagagg
     6061 tagaggtaca ggcaggtggg cagtgaggtg ccctcaccga ggtgactggc ctctaacaga
     6121 gtagcattgc tgtcagctgt tttacaagtc atttcaagga gggttggcca ctcttgttcc
     6181 tgatacatgc caggtgttca cactcttttt ctgtcacaat agttttaatt ttttttttat
     6241 tttttaaact tcttcttttt aagagaagta tgacgaagac agctttgtaa gttcgtcttg
     6301 cctttgtaca tcttctgtca accccttgct gagcagagat ggggcgaggg cacaggtttc
     6361 taatgatgga ataaaaagtc aaagtgatgt ctcacaacta taggggagga cgttctgggg
     6421 ggctccagga acgtcttcat caggttatgg accagtaaga ctttggtttg ggatccccta
     6481 gtctcttctg cctattgtgt gcactgattg gaggatttag acccaaatac cctcctttta
     6541 tggaccatgt catgttgggg agggggctga aaggagccca gtttggaagt cggctcctgg
     6601 agactctaga caccaatgct agaggctctt cccctatggg ttaactactt ttgcattttg
     6661 tgtactgcag aaggatgaga gggtctgggg actggctgag cgtgtatact gtgtatacat
     6721 gggagctggc tgctgaggtg acagcaacct actcctaata aagttggatg tctttaaaac
     6781 ttgca
//
