LOCUS       NM_001309459            2074 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus actin related protein 8 (Actr8), mRNA.
ACCESSION   NM_001309459 XM_008771033 XM_008771251
VERSION     NM_001309459.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2074)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   2  (bases 1 to 2074)
  AUTHORS   Chen,L., Cai,Y., Jin,J., Florens,L., Swanson,S.K., Washburn,M.P.,
            Conaway,J.W. and Conaway,R.C.
  TITLE     Subunit organization of the human INO80 chromatin remodeling
            complex: an evolutionarily conserved core complex catalyzes
            ATP-dependent nucleosome remodeling
  JOURNAL   J Biol Chem 286 (13), 11283-11289 (2011)
   PUBMED   21303910
REFERENCE   3  (bases 1 to 2074)
  AUTHORS   Watanabe,S. and Peterson,C.L.
  TITLE     The INO80 family of chromatin-remodeling enzymes: regulators of
            histone variant dynamics
  JOURNAL   Cold Spring Harb Symp Quant Biol 75, 35-42 (2010)
   PUBMED   21502417
  REMARK    Review article
REFERENCE   4  (bases 1 to 2074)
  AUTHORS   Wu,S., Shi,Y., Mulligan,P., Gay,F., Landry,J., Liu,H., Lu,J.,
            Qi,H.H., Wang,W., Nickoloff,J.A., Wu,C. and Shi,Y.
  TITLE     A YY1-INO80 complex regulates genomic stability through homologous
            recombination-based repair
  JOURNAL   Nat Struct Mol Biol 14 (12), 1165-1172 (2007)
   PUBMED   18026119
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1, FM064750.1, FM104470.1 and FN802323.1.
            
            On or before Jun 5, 2015 this sequence version replaced
            XM_008771033.1, XM_008771251.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.73397.1,
                                           SRR26360172.278124.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-63                JAXUCZ010000016.1  5170695-5170757
            64-697              FM064750.1         1-634
            698-1063            FM104470.1         113-478
            1064-1602           FN802323.1         91-629
            1603-1649           JAXUCZ010000016.1  5182606-5182652
            1650-1813           JAXUCZ010000016.1  5183277-5183440
            1814-2074           JAXUCZ010000016.1  5185001-5185261
FEATURES             Location/Qualifiers
     source          1..2074
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p16"
     gene            1..2074
                     /gene="Actr8"
                     /note="actin related protein 8"
                     /db_xref="GeneID:361107"
                     /db_xref="RGD:1311878"
     exon            1..205
                     /gene="Actr8"
                     /inference="alignment:Splign:2.1.0"
     CDS             83..1957
                     /gene="Actr8"
                     /note="ARP8 actin-related protein 8 homolog"
                     /codon_start=1
                     /product="actin-related protein 8"
                     /protein_id="NP_001296388.1"
                     /db_xref="GeneID:361107"
                     /db_xref="RGD:1311878"
                     /translation="MTQAEKGDAENGKEKGGEKEKEQRGVKRPIVPALVPESLQEQIQ
                     SNFIVVVHPGSTTLRIGRATDTLPASIPHVIARRHKQQGQPLYKDNWLLREGLNKPES
                     NEQRQNGLKMVDQAIWSKKMSNGTRRIPVSPEQTRSYNKQMRPAILDHCSGNKWTNTS
                     HQPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAVLADIEVIWSHAIQK
                     YLEIPLKDLKYYRCILLIPDIYNKQHVKELVHMILMKMGFAGIVVHQESVCATFGSGL
                     SSTCVVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQL
                     ANKMDCLLLQHLKETFCHLDQDISGLQDHEFQIRHPDSPALLYQFRLGDEKLQAPMAL
                     FYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLATQSKQEQSAKATADRKSASKPIG
                     FEGDLRGQSSDLPERLHSQEVDLASSQGDCLMAGNESEEALTALMSRKTAISLFEGKA
                     LGLDKAILHSVDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRI
                     IENVDVITRPKDMDPRLISWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAAFVW
                     "
     exon            206..376
                     /gene="Actr8"
                     /inference="alignment:Splign:2.1.0"
     exon            377..487
                     /gene="Actr8"
                     /inference="alignment:Splign:2.1.0"
     exon            488..592
                     /gene="Actr8"
                     /inference="alignment:Splign:2.1.0"
     exon            593..766
                     /gene="Actr8"
                     /inference="alignment:Splign:2.1.0"
     exon            767..860
                     /gene="Actr8"
                     /inference="alignment:Splign:2.1.0"
     exon            861..993
                     /gene="Actr8"
                     /inference="alignment:Splign:2.1.0"
     exon            994..1147
                     /gene="Actr8"
                     /inference="alignment:Splign:2.1.0"
     exon            1148..1243
                     /gene="Actr8"
                     /inference="alignment:Splign:2.1.0"
     exon            1244..1384
                     /gene="Actr8"
                     /inference="alignment:Splign:2.1.0"
     exon            1385..1649
                     /gene="Actr8"
                     /inference="alignment:Splign:2.1.0"
     exon            1650..1813
                     /gene="Actr8"
                     /inference="alignment:Splign:2.1.0"
     exon            1814..2074
                     /gene="Actr8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcctgcgcga tggttctcca ctgcctactg tggcgtcggt gttcctgagc cccggggttg
       61 ttggtggtcg gtggtggcag agatgaccca agccgaaaag ggggacgcgg agaacgggaa
      121 ggagaagggc ggggagaagg agaaggagca gcgcggcgtg aagcggccca tcgtgcccgc
      181 actggtcccc gagtcgctgc aggagcaaat ccagagcaac tttattgtcg tcgtacaccc
      241 aggctcaaca acgttaagaa tcggccgagc cacagacacg ctcccagcca gcattcctca
      301 cgtcattgct cggagacaca aacagcaagg gcagcccctg tacaaggaca actggctcct
      361 aagggaagga ctaaataaac ctgaaagtaa tgaacaaaga caaaatggcc ttaaaatggt
      421 ggaccaggca atatggtcta aaaaaatgtc aaacggtaca aggcggatcc ctgtgtcacc
      481 agaacagaca cgctcctaca acaagcagat gcgacctgcc attctagatc actgttctgg
      541 aaacaaatgg acaaacacgt ctcaccagcc tgagtatttg gtaggagagg aggctttgta
      601 cgtcaacccc ctggactgtt acaacattca ctggcctatc agaaggggtc agttgaatat
      661 ccacccgggt cctggaggct ccctaacagc tgttctggcg gatattgaag tgatatggtc
      721 tcacgcgata cagaagtatt tggaaatccc actgaaagat ttaaagtatt acaggtgcat
      781 cttgttaatc ccagacatct ataacaaaca gcacgttaaa gagctggtcc acatgatact
      841 gatgaagatg ggcttcgcag ggatcgtggt ccatcaggag tcagtgtgcg ccacgtttgg
      901 gagtggctta agcagcacct gtgttgtaga cgtcggggac cagaaaacaa gtgtgtgctg
      961 tgtagaagat ggggtgtctc atcggaacac acggctttgc ctggcctacg ggggctccga
     1021 cgtgtccagg tgtttttact ggctcatgca gagagcagga ttcccttaca gagagtgcca
     1081 gttagcaaat aaaatggact gcctcctctt gcagcacctt aaggagacct tttgtcattt
     1141 agatcaggac atctccgggc ttcaggacca tgagtttcag attcggcacc cggactcacc
     1201 tgccctgctt taccagtttc gattgggaga tgaaaagctc caggctccaa tggcgctgtt
     1261 ttacccagca acctttggaa tcgtcggaca gaaaatgaca actttgcagc acaggtccca
     1321 gggagatcct gaggatcctc atgatgagca ttacctgctg gccacacaga gcaagcaaga
     1381 acagtctgca aaagctactg ctgaccgcaa gtctgcatcc aaacccattg gatttgaagg
     1441 ggatctccgt ggccagtcct ctgatcttcc agagagactc cattcccagg aggtggactt
     1501 ggcttcttca cagggagact gtttgatggc cggcaatgag tctgaagaag ccctcactgc
     1561 actgatgtcc aggaaaactg ccatctcact gtttgaggga aaagccctag gccttgataa
     1621 ggccatcctc cacagcgtgg actgttgctc atccgacgat actaaaaaga agatgtatag
     1681 ctctatcctg gtggtgggag gcggtttgat gtttcataaa gctcaagagt ttctccagca
     1741 cagaattctc aacaaaatgc caccttcatt caggcgaatt attgaaaatg tggatgtgat
     1801 cacaaggccc aaggacatgg atccccggct gatttcgtgg aaggggggtg cagtgttggc
     1861 gtgtttggac accactcagg aactgtggat ttaccagcga gagtggcaac gctttggtgt
     1921 ccgaatgcta cgggaacgag ctgcctttgt gtggtgaaaa ccacaaccat gtctctggac
     1981 ataaagactt aaagagtgta tgtattttaa gttattgagc ttgaagcttg attttcctag
     2041 aattaaatta attcaatttt atgtgaaagt atga
//
