LOCUS       NM_001395604            2410 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus actin related protein 5 (Actr5), mRNA.
ACCESSION   NM_001395604 XM_006235422
VERSION     NM_001395604.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2410)
  AUTHORS   Chen,L., Cai,Y., Jin,J., Florens,L., Swanson,S.K., Washburn,M.P.,
            Conaway,J.W. and Conaway,R.C.
  TITLE     Subunit organization of the human INO80 chromatin remodeling
            complex: an evolutionarily conserved core complex catalyzes
            ATP-dependent nucleosome remodeling
  JOURNAL   J Biol Chem 286 (13), 11283-11289 (2011)
   PUBMED   21303910
REFERENCE   2  (bases 1 to 2410)
  AUTHORS   Jiang,Y., Wang,X., Bao,S., Guo,R., Johnson,D.G., Shen,X. and Li,L.
  TITLE     INO80 chromatin remodeling complex promotes the removal of UV
            lesions by the nucleotide excision repair pathway
  JOURNAL   Proc Natl Acad Sci U S A 107 (40), 17274-17279 (2010)
   PUBMED   20855601
REFERENCE   3  (bases 1 to 2410)
  AUTHORS   Watanabe,S. and Peterson,C.L.
  TITLE     The INO80 family of chromatin-remodeling enzymes: regulators of
            histone variant dynamics
  JOURNAL   Cold Spring Harb Symp Quant Biol 75, 35-42 (2010)
   PUBMED   21502417
  REMARK    Review article
REFERENCE   4  (bases 1 to 2410)
  AUTHORS   Kitayama,K., Kamo,M., Oma,Y., Matsuda,R., Uchida,T., Ikura,T.,
            Tashiro,S., Ohyama,T., Winsor,B. and Harata,M.
  TITLE     The human actin-related protein hArp5: nucleo-cytoplasmic shuttling
            and involvement in DNA repair
  JOURNAL   Exp Cell Res 315 (2), 206-217 (2009)
   PUBMED   19014934
REFERENCE   5  (bases 1 to 2410)
  AUTHORS   Wu,S., Shi,Y., Mulligan,P., Gay,F., Landry,J., Liu,H., Lu,J.,
            Qi,H.H., Wang,W., Nickoloff,J.A., Wu,C. and Shi,Y.
  TITLE     A YY1-INO80 complex regulates genomic stability through homologous
            recombination-based repair
  JOURNAL   Nat Struct Mol Biol 14 (12), 1165-1172 (2007)
   PUBMED   18026119
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jul 21, 2021 this sequence version replaced XM_006235422.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22399481.2020609.1,
                                           SRR26643296.11932.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-614               JAXUCZ010000003.1  167702492-167703105
            615-844             JAXUCZ010000003.1  167704009-167704238
            845-1014            JAXUCZ010000003.1  167705935-167706104
            1015-1232           JAXUCZ010000003.1  167709570-167709787
            1233-1415           JAXUCZ010000003.1  167710394-167710576
            1416-1538           JAXUCZ010000003.1  167711799-167711921
            1539-1678           JAXUCZ010000003.1  167712539-167712678
            1679-1811           JAXUCZ010000003.1  167713246-167713378
            1812-2410           JAXUCZ010000003.1  167715138-167715736
FEATURES             Location/Qualifiers
     source          1..2410
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..2410
                     /gene="Actr5"
                     /note="actin related protein 5"
                     /db_xref="GeneID:362258"
                     /db_xref="RGD:1307958"
     exon            1..614
                     /gene="Actr5"
                     /inference="alignment:Splign:2.1.0"
     CDS             240..2069
                     /gene="Actr5"
                     /note="ARP5 actin-related protein 5 homolog"
                     /codon_start=1
                     /product="actin-related protein 5"
                     /protein_id="NP_001382533.1"
                     /db_xref="GeneID:362258"
                     /db_xref="RGD:1307958"
                     /translation="MEANVFRFRDARSAPDPVLEAGPVAFGSQPVPLVLDNGSFQARA
                     GWACPGPDPGPEPRLQFRAVCARGRGGARGGLGPQVGNALGSLEPLRWMLRSPFDRNV
                     PVNLELQELLLDYSFQHLGVSSQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYRIPK
                     VAYGIDSLFSFYHNMPKNALSSGLVISSGYQCTHILPVLEGRLDAKNCKRINLGGSQA
                     AGYLQRLLQLKYPGHLAAITLSRMEEILQEHSYIAEDYAAELQKWRCPDYYENNVHKM
                     QLPFSSKLLGSTLTAEEKQERRQQQLRRLQELNARRREEKLQLDQERLERLLYVQELL
                     EDGQMDQFHKALIELNMDSPEELQSYIQKLTLAVEQAKQKILQAEANLEVDVVDSKPE
                     TPDLEPLEPSLEDVENINDFEPLFSEETPEVEKPQVTTTVQPVFNLAAYHQLFVGTER
                     IRAPEIIFQPSLIGEEQAGIAETLHYVLDRYPKAVQDTLVQNVFLTGGNVMYPGMKAR
                     VEKELLEMRPFQSSFQVQLASNPVLDAWYGARDWALDHLEDSGAWVTRKDYEEKGGEY
                     LKEHCASNTYVPIRLPKQASRASETQTSGRGSGASGSGAGDQA"
     exon            615..844
                     /gene="Actr5"
                     /inference="alignment:Splign:2.1.0"
     exon            845..1014
                     /gene="Actr5"
                     /inference="alignment:Splign:2.1.0"
     exon            1015..1232
                     /gene="Actr5"
                     /inference="alignment:Splign:2.1.0"
     exon            1233..1415
                     /gene="Actr5"
                     /inference="alignment:Splign:2.1.0"
     exon            1416..1538
                     /gene="Actr5"
                     /inference="alignment:Splign:2.1.0"
     exon            1539..1678
                     /gene="Actr5"
                     /inference="alignment:Splign:2.1.0"
     exon            1679..1811
                     /gene="Actr5"
                     /inference="alignment:Splign:2.1.0"
     exon            1812..2410
                     /gene="Actr5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgtggtca caaggaggct gttgaggaca ggctagagct accattggcc ttgaggcctg
       61 gatcagcggg gaatagaaac ccacagaagg ttctggagaa ccaggggcga atcaggtaca
      121 gaaaccaacg agtcctcctt acaggaggag gtgtccggac gcttccgggc cctgagactc
      181 agtcggggcc ggggcttcgt gacgcactcg gcgtcggggc gggaccggct ctagccaaga
      241 tggaggcgaa cgtgttccgg ttccgagatg cccgctctgc tccggatccg gtactggaag
      301 ccgggccagt ggccttcggc tcgcagccgg tgcctctggt gctggacaac ggatcgttcc
      361 aggctcgggc cgggtgggcg tgccccgggc cggacccggg tcccgagccg cgcctgcagt
      421 tccgcgccgt gtgcgcgcgc ggccgtggcg gggcgcgcgg cgggctagga ccgcaggtgg
      481 gcaacgcgct gggaagcctc gagcctctgc gctggatgct gcgctctccc ttcgaccgca
      541 atgtgcctgt caacctggaa ctgcaggaac tgctgctgga ctacagcttc cagcacctcg
      601 gcgtctcctc gcagggctgc gttgaccatc ccatagttct gacagaggcc gtgtgtaacc
      661 cactctactc ccgccaaatg atgtcggagc tcctcttcga atgctacagg atcccgaagg
      721 ttgcctatgg gatagacagc ctcttcagtt tctaccacaa catgcccaaa aacgcccttt
      781 ccagtggcct tgtcatctcc tctggctacc agtgcacgca cattttacca gtcctggaag
      841 gaaggcttga tgccaaaaac tgcaaacgta tcaatctcgg aggaagtcag gccgctggct
      901 acctgcagcg gctcctccag ctgaagtatc cgggccacct ggccgccatc acgctcagcc
      961 gcatggagga gatcctgcag gaacacagct acattgccga ggactacgca gcagaattgc
     1021 agaagtggcg atgtcctgat tattatgaga acaatgtcca caagatgcag ctcccgttct
     1081 ccagcaagct cctgggcagc acactgacgg ccgaggagaa gcaggagcgg cggcagcagc
     1141 agctgcgacg gctgcaagag ctcaacgccc ggcggcggga ggagaagctg cagctagatc
     1201 aggagcggct ggagcggctg ttgtatgtgc aggagctcct agaggatggc cagatggacc
     1261 agtttcacaa agctctgata gagctgaaca tggactcccc agaagaactg cagtcctaca
     1321 tacaaaagct caccttggca gtggagcagg ccaaacagaa aatcctgcag gcggaagcca
     1381 acttggaggt ggatgtggtg gacagcaagc cagagacccc tgacttggaa ccgctggagc
     1441 cctcccttga agatgtggag aacatcaatg attttgaacc cttgttctca gaggaaacgc
     1501 cagaagtgga gaagccgcag gtcaccacca cagtccagcc cgtgtttaac ttggcagcgt
     1561 atcatcagct gtttgttggg acagaaagga ttcgtgctcc agagattatt ttccagccgt
     1621 ccctcatagg agaagagcag gcggggattg cagagaccct ccattacgtc ctggacaggt
     1681 acccaaaggc tgttcaggat accctggtcc agaatgtttt cctcactggg gggaacgtga
     1741 tgtacccagg catgaaggcc cgagtggaga aggagctgct ggagatgagg cccttccagt
     1801 cctccttcca ggttcagctt gcctcgaacc ctgtgctgga tgcgtggtat ggtgcccgtg
     1861 actgggcctt ggatcaccta gaagacagtg gagcctgggt caccagaaag gactatgaag
     1921 aaaagggggg cgagtacctc aaggagcatt gtgcttccaa cacgtacgtc cccatccggc
     1981 tgcctaagca ggcctcacga gcctcagaga cccagacttc cgggagaggc tcaggggcca
     2041 gtgggagtgg agctggtgat caagcctagc agagaggact ccaagatgtc ctagtgcttc
     2101 atccttgcca tataggcagt atttgggaca aggacagtgc tccgggttgc actagtgcag
     2161 ccttgtttgc ctagtgactg gatttctcct gggagcccag cagaggacag caggtgatct
     2221 acctcagtga aggacacagt ggcctctgcc accgagaacc acagacaagc tgtggtactg
     2281 ctctcctcag cagtgagaga aacgggtgga gacaagaatc gggcagtgtt tctctttaca
     2341 ctgaaaacct ttgttcttgg tggtttttct ggttttgttg tttttgtttt taaagctcta
     2401 aagttatcca
//
