LOCUS       NM_001039033            1754 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus actin-like 6A (Actl6a), mRNA.
ACCESSION   NM_001039033 XM_342225
VERSION     NM_001039033.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1754)
  AUTHORS   Alpsoy A and Dykhuizen EC.
  TITLE     Glioma tumor suppressor candidate region gene 1 (GLTSCR1) and its
            paralog GLTSCR1-like form SWI/SNF chromatin remodeling subcomplexes
  JOURNAL   J Biol Chem 293 (11), 3892-3903 (2018)
   PUBMED   29374058
REFERENCE   2  (bases 1 to 1754)
  AUTHORS   Cui W, Dai X, Marcho C, Han Z, Zhang K, Tremblay KD and Mager J.
  TITLE     Towards Functional Annotation of the Preimplantation Transcriptome:
            An RNAi Screen in Mammalian Embryos
  JOURNAL   Sci Rep 6, 37396 (2016)
   PUBMED   27869233
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1754)
  AUTHORS   Ivatt RM, Sanchez-Martinez A, Godena VK, Brown S, Ziviani E and
            Whitworth AJ.
  TITLE     Genome-wide RNAi screen identifies the Parkinson disease GWAS risk
            locus SREBF1 as a regulator of mitophagy
  JOURNAL   Proc Natl Acad Sci U S A 111 (23), 8494-8499 (2014)
   PUBMED   24912190
REFERENCE   4  (bases 1 to 1754)
  AUTHORS   Singh AP and Archer TK.
  TITLE     Analysis of the SWI/SNF chromatin-remodeling complex during early
            heart development and BAF250a repression cardiac gene transcription
            during P19 cell differentiation
  JOURNAL   Nucleic Acids Res 42 (5), 2958-2975 (2014)
   PUBMED   24335282
REFERENCE   5  (bases 1 to 1754)
  AUTHORS   Staahl BT, Tang J, Wu W, Sun A, Gitler AD, Yoo AS and Crabtree GR.
  TITLE     Kinetic analysis of npBAF to nBAF switching reveals exchange of
            SS18 with CREST and integration with neural developmental pathways
  JOURNAL   J Neurosci 33 (25), 10348-10361 (2013)
   PUBMED   23785148
REFERENCE   6  (bases 1 to 1754)
  AUTHORS   Otsuki T, Furukawa Y, Ikeda K, Endo H, Yamashita T, Shinohara A,
            Iwamatsu A, Ozawa K and Liu JM.
  TITLE     Fanconi anemia protein, FANCA, associates with BRG1, a component of
            the human SWI/SNF complex
  JOURNAL   Hum Mol Genet 10 (23), 2651-2660 (2001)
   PUBMED   11726552
REFERENCE   7  (bases 1 to 1754)
  AUTHORS   Xue Y, Canman JC, Lee CS, Nie Z, Yang D, Moreno GT, Young MK,
            Salmon ED and Wang W.
  TITLE     The human SWI/SNF-B chromatin-remodeling complex is related to
            yeast rsc and localizes at kinetochores of mitotic chromosomes
  JOURNAL   Proc Natl Acad Sci U S A 97 (24), 13015-13020 (2000)
   PUBMED   11078522
REFERENCE   8  (bases 1 to 1754)
  AUTHORS   Ikura T, Ogryzko VV, Grigoriev M, Groisman R, Wang J, Horikoshi M,
            Scully R, Qin J and Nakatani Y.
  TITLE     Involvement of the TIP60 histone acetylase complex in DNA repair
            and apoptosis
  JOURNAL   Cell 102 (4), 463-473 (2000)
   PUBMED   10966108
REFERENCE   9  (bases 1 to 1754)
  AUTHORS   Zhao K, Wang W, Rando OJ, Xue Y, Swiderek K, Kuo A and Crabtree GR.
  TITLE     Rapid and phosphoinositol-dependent binding of the SWI/SNF-like BAF
            complex to chromatin after T lymphocyte receptor signaling
  JOURNAL   Cell 95 (5), 625-636 (1998)
   PUBMED   9845365
REFERENCE   10 (bases 1 to 1754)
  AUTHORS   Wang W, Xue Y, Zhou S, Kuo A, Cairns BR and Crabtree GR.
  TITLE     Diversity and specialization of mammalian SWI/SNF complexes
  JOURNAL   Genes Dev 10 (17), 2117-2130 (1996)
   PUBMED   8804307
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC098698.1.
            
            On Jan 12, 2006 this sequence version replaced XM_342225.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098698.1, SRR8487230.58758.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1754
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q24"
     gene            1..1754
                     /gene="Actl6a"
                     /gene_synonym="RGD1307747"
                     /note="actin-like 6A"
                     /db_xref="GeneID:361925"
                     /db_xref="RGD:1307747"
     exon            1..99
                     /gene="Actl6a"
                     /gene_synonym="RGD1307747"
                     /inference="alignment:Splign:2.1.0"
     CDS             75..1364
                     /gene="Actl6a"
                     /gene_synonym="RGD1307747"
                     /codon_start=1
                     /product="actin-like protein 6A"
                     /protein_id="NP_001034122.1"
                     /db_xref="GeneID:361925"
                     /db_xref="RGD:1307747"
                     /translation="MSGGVYGGDEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIGVV
                     LERDDGSTMMEIDGDKGKQGGPTYYIDTNALRVPRESMEAISPLKNGMVEDWDSFQAI
                     LDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYSIPAFFLCKTAVLTAF
                     ANGRSTGLILDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFITMQCRELFQEMNIELI
                     PPYMIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSDSTYDE
                     QVAAQMPTVHYEFPNGYNCDFGAERLKIPEGLFDPSNVKGLSGNTMLGVSHVVTTSVG
                     MCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFS
                     SWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKCP"
     exon            100..176
                     /gene="Actl6a"
                     /gene_synonym="RGD1307747"
                     /inference="alignment:Splign:2.1.0"
     exon            177..351
                     /gene="Actl6a"
                     /gene_synonym="RGD1307747"
                     /inference="alignment:Splign:2.1.0"
     exon            352..452
                     /gene="Actl6a"
                     /gene_synonym="RGD1307747"
                     /inference="alignment:Splign:2.1.0"
     exon            453..550
                     /gene="Actl6a"
                     /gene_synonym="RGD1307747"
                     /inference="alignment:Splign:2.1.0"
     exon            551..645
                     /gene="Actl6a"
                     /gene_synonym="RGD1307747"
                     /inference="alignment:Splign:2.1.0"
     exon            646..752
                     /gene="Actl6a"
                     /gene_synonym="RGD1307747"
                     /inference="alignment:Splign:2.1.0"
     exon            753..842
                     /gene="Actl6a"
                     /gene_synonym="RGD1307747"
                     /inference="alignment:Splign:2.1.0"
     exon            843..904
                     /gene="Actl6a"
                     /gene_synonym="RGD1307747"
                     /inference="alignment:Splign:2.1.0"
     exon            905..1019
                     /gene="Actl6a"
                     /gene_synonym="RGD1307747"
                     /inference="alignment:Splign:2.1.0"
     exon            1020..1100
                     /gene="Actl6a"
                     /gene_synonym="RGD1307747"
                     /inference="alignment:Splign:2.1.0"
     exon            1101..1196
                     /gene="Actl6a"
                     /gene_synonym="RGD1307747"
                     /inference="alignment:Splign:2.1.0"
     exon            1197..1283
                     /gene="Actl6a"
                     /gene_synonym="RGD1307747"
                     /inference="alignment:Splign:2.1.0"
     exon            1284..1731
                     /gene="Actl6a"
                     /gene_synonym="RGD1307747"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcttggggag tcgagtcgcg ccgctgttat ctttcgccca gtagtcttcg gccagtcccc
       61 gcccaacagt agctatgagc ggcggcgtgt acggcggaga tgaagttggc gctcttgttt
      121 ttgacattgg atcatataca gtgagggctg gctatgctgg tgaggactgc cctaaggttg
      181 atttccccac ggctatcggg gtggtgctgg agagagatga tggaagcacg atgatggaga
      241 tcgatggtga caaaggcaag cagggcgggc ccacctacta catagacacc aatgccctcc
      301 gagtgcccag ggagagcatg gaagccatct caccgctcaa gaatggcatg gttgaagact
      361 gggatagttt ccaggccatt ttggatcata catacaagat gcatgtcaaa tctgaagcca
      421 gtctgcatcc tgttctcatg tcggaagcac cgtggaacac cagggcaaag agagagaaac
      481 tgacagagtt gatgtttgag cactacagca tccctgcatt cttcctttgc aaaactgcag
      541 ttttgacggc atttgctaat ggtcgttcta ctgggctgat attggacagt ggagctaccc
      601 acaccactgc gattccagtc catgatggct acgtccttca acaaggcatt gtgaaatccc
      661 ctcttgctgg agacttcatt accatgcagt gcagagaact cttccaggaa atgaacatag
      721 aactcatccc tccttatatg attgcatcaa aagaggctgt tcgagaaggc tctccagcca
      781 actggaaaag gaaagagaaa ctgccccagg ttacaaggtc ttggcataat tacatgtgca
      841 actgcgtcat ccaagatttt caagcttccg tccttcaagt gtcagactcc acctatgacg
      901 aacaagtggc tgcacagatg cccactgttc actatgaatt ccctaatggc tacaactgcg
      961 attttggtgc agagcggctg aaaattcctg aaggattatt tgacccttcc aacgtaaagg
     1021 gactatctgg gaacacaatg ctgggagtca gtcacgttgt cacaacaagt gttggaatgt
     1081 gtgacattga catcagacca ggtctctatg gcagtgtgat cgtagcagga ggaaacacct
     1141 taatacagag tttcacggat aggttaaata gagagctttc tcagaaaact ccgccgagta
     1201 tgcggttgaa actgattgca aacaacacga cggtggagcg gaggttcagc tcgtggatcg
     1261 gcggctccat cctagcatct ttgggtacct ttcaacagat gtggatttcc aaacaggaat
     1321 atgaagaagg agggaagcag tgtgtagaaa gaaaatgccc ttgagggctc caccctgcct
     1381 gcccatcacc tcacgtctgt agctttagga cactcaggaa aagatgacca tcttttgtag
     1441 aatgtttata catgtttgca tatttcaatt tccacttaaa ttttttaagg ctttaactgg
     1501 ctctataaat taaatgagtt tgtgctttcc ttgagatgca cttattctta ttacaggcat
     1561 tttataattt tgtatgaatg tctattttct ctaaatattt tgctttcagt aagtactttc
     1621 cagctctcct gtgggttggt ggaattactc tttattgact agtaaaagtt actgcctatg
     1681 ctttttacct taggcttaca aaattaaata aaaatcacta ctgtcctaaa aaaaaaaaaa
     1741 aaaaaaaaaa aaaa
//
