LOCUS       XM_006235321            3232 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus acyl-CoA synthetase short-chain family
            member 2 (Acss2), transcript variant X1, mRNA.
ACCESSION   XM_006235321
VERSION     XM_006235321.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006235321.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006235321.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3232
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3232
                     /gene="Acss2"
                     /gene_synonym="Acas2"
                     /note="acyl-CoA synthetase short-chain family member 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 133 ESTs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 169 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:311569"
                     /db_xref="RGD:1305489"
     CDS             261..2537
                     /gene="Acss2"
                     /gene_synonym="Acas2"
                     /codon_start=1
                     /product="acetyl-coenzyme A synthetase, cytoplasmic
                     isoform X1"
                     /protein_id="XP_006235383.3"
                     /db_xref="GeneID:311569"
                     /db_xref="RGD:1305489"
                     /translation="MPRARPLASGSALTRGPASRVDLFSPPRHPQRPQRRPRCSELDV
                     MGLPEERRKSGSGSRAREETGAEGRVRGWSPPPEVRRSAHVPSLQRYRELHRRSVEEP
                     REFWGNIAKEFYWKTPCPGPFLQYNFDVTKGKIFTEWMKGATTNICYNVLDRNVHEKK
                     LGDKVAFYWEGNEPGETTKITYRELLVQVCQFSNVLRKQGVQKGDRVAIYMPMILELV
                     VAMLACARLGALHSIVFAGFSAESLCERILDSSCCLLITTDAFYRGEKLVNLKELADE
                     SLEKCREKGFPVRCCIVVKHLGRAELGMNDSPSQSPPVKRPCPDVQGKLKEKSKCIRP
                     QISWNEGVDLWWHELMQQAGDEFEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYML
                     YVATTFKYVFDFHPEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDEGR
                     LWSIVDKYKVTKFYTAPTAIRMLMKFGDDPVTKHSRASLQVLGTVGEPINPEAWLWYH
                     RVVGSQRCPIVDTFWQTETGGHMLTPLPGATPMKPGSASFPFFGVAPAILNESGEELE
                     GEAEGYLVFKQPWPGIMRTVYGNHTRFETTYFKKFPGYYVTGDGCRRDQDGYYWITGR
                     IDDMLNVSGHLLSTAEVESALVEHEAVAEAAVVGHPHPVKGECLYCFVTLCDGHTFSP
                     TLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSGKIMRRVLRKIAQNDHDLGDTSTV
                     ADPSVINHLFSHRCLTTQ"
ORIGIN      
        1 cctgcctcct ctcctgtcac atccagccgg gctacacccc atcactccac gggcccgcct
       61 tctcgcctgt cacctctggc cccgccccta ctctgtcatt ccaaggctcc acccctctcc
      121 tgtcatttcc cgaccattcc ttcagctttg actacggctc caccccttcc ggcaagtcag
      181 ccccgccctt acccccctgg ttttcctaaa gcggtttttg ctgaccccgc cccttcacac
      241 atggccctac ccactattgg atgcctagag ctcggccttt agcctcaggc tccgccctca
      301 cccgaggccc cgcctctagg gtcgacctgt tttccccgcc ccggcacccg cagcgaccgc
      361 aacggcggcc aaggtgctca gaacttgacg tgatggggct tcccgaggag cggcgcaaga
      421 gcggcagcgg gagccgggct cgcgaggaga ccggcgccga gggccgggtg cggggttggt
      481 ccccgccgcc ggaggtcaga cgctcggcgc acgtcccctc tctgcagcgc taccgcgagc
      541 tgcaccggcg ttctgtggag gagccacggg agttttgggg aaacattgcc aaggaatttt
      601 actggaaaac cccatgccct ggcccattcc tccagtacaa ctttgatgtg actaaaggga
      661 aaatattcac tgagtggatg aaaggagcaa ccacaaacat ctgctacaat gtgctggata
      721 gaaatgtcca tgagaaaaaa cttggcgaca aagttgcttt ttactgggag ggcaatgagc
      781 caggggagac caccaagatc acataccgtg aactcctggt ccaggtgtgt cagttcagca
      841 atgttctccg taaacagggt gttcagaagg gtgaccgagt ggccatctac atgcctatga
      901 tcttggagct tgtggtggct atgctggcat gtgctcgcct tggagctttg cactccattg
      961 tgtttgcagg cttctctgca gagtctctct gtgaacggat cttggattcc agctgctgcc
     1021 tgctcattac tacagatgcc ttctacaggg gggaaaaact tgtgaacctg aaggagctgg
     1081 ctgatgagtc cttggagaag tgccgagaga agggtttccc agtgagatgc tgcattgtgg
     1141 tcaaacatct ggggcgggca gagctgggca tgaatgactc ccccagccag tccccacccg
     1201 ttaagaggcc atgtccagat gtccagggta agctgaaaga gaaatccaag tgcatccgac
     1261 cccagatctc ctggaatgaa ggggttgact tgtggtggca tgaactcatg cagcaggcag
     1321 gagatgagtt tgagcctgag tggtgtgatg ccgaggaccc tctcttcatc ttgtatacca
     1381 gtggctccac aggcaaaccc aagggtgtgg tgcacacagt tggaggctac atgctctatg
     1441 tggctacaac tttcaagtat gtgtttgatt tccatccgga ggatgtattc tggtgcacag
     1501 cagacattgg ctggatcact ggtcattcct atgtcaccta tgggccgctg gcgaatggtg
     1561 ccaccagtgt tttgtttgag gggatcccca catacccaga tgaaggccgc ttgtggagca
     1621 ttgtggacaa atacaaggtg accaagttct acacggcacc aacagcaatc cggatgctca
     1681 tgaagtttgg agatgatcct gtcaccaagc atagccgggc atccttgcag gtgctgggca
     1741 cagtaggtga acccatcaac cctgaagcct ggctatggta ccatcgggta gtaggttccc
     1801 agcgttgccc cattgtagac accttctggc aaacagaaac aggtggccat atgctgaccc
     1861 ctctccctgg tgccacaccc atgaaaccag gttctgcttc tttcccgttc tttggtgttg
     1921 cgcctgcaat cctgaacgag tcgggggaag aactggaagg ggaagctgaa ggttatctgg
     1981 tgttcaagca gccctggcca gggatcatgc gcacagttta tgggaaccac acacgtttcg
     2041 agaccaccta ctttaagaag ttccctggct actacgtgac tggagatggc tgccgacggg
     2101 atcaggacgg ctattactgg atcactggca ggattgatga catgctcaat gtgtctggac
     2161 atcttctgag tacagcagag gtggaatcag cacttgtgga acatgaggct gttgcagagg
     2221 cagctgtggt gggccaccct catcctgtga agggtgaatg cctctactgc tttgttacct
     2281 tgtgtgacgg ccataccttc agccccaccc tcactgagga actcaagaag cagattagag
     2341 aaaagattgg ccccattgcc acaccagact acatccagaa tgcacccggc ttgcctaaaa
     2401 cacgctcagg aaaaatcatg aggagagtac tccggaagat tgctcagaat gaccacgacc
     2461 tgggggatac ctctacagtg gctgacccat ctgtcatcaa ccatctcttc agtcaccgct
     2521 gcctgaccac acagtgaaca agactcttat ccaggatttc cctgtgcttg gctctccaaa
     2581 tttctgccca tctatcctgt ccctcaccca agagtaccaa gggccagtgc tagttgacat
     2641 ttaggttgaa actagggaga cagttactta gactgccagg tcgaagggaa cagggctcag
     2701 gtcaaccatg cactgatact ctcctaggct acagagatct ccaagcccag aacagagact
     2761 tgaacaccat gtccttaacc agagttagct atgcagagtg taagtgaggg cctacctaga
     2821 agcaggcggc acctctaatc ctttttcagc tttctcagaa agcaccagtt cttaccttgg
     2881 gcctgcacta gcctttataa gtgacagtta gcaagtctat gaataattat tttttaaaat
     2941 actttgttgt ctctgttctg agtctgaatt ccttgtcaaa tgatagcagt gtctgttcat
     3001 ttgctcaaga gactaggcaa gtggcttcag tctccagagg acttccatat catctgcttc
     3061 gttgaaagat taagatatgc tggtcctaga accaagggag ttaacattcc tagtctgcac
     3121 caggaacaga accctgccca tgagaggcac ttgtaggcga aactctcttt tcttgtactt
     3181 tttgtgctaa agacccactg ttgtaggaat aaagtttatg aactcaagaa ca
//
