LOCUS       NM_001031645            1336 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus acid phosphatase 6, lysophosphatidic (Acp6),
            mRNA.
ACCESSION   NM_001031645 XM_215655
VERSION     NM_001031645.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1336)
  AUTHORS   Nagamachi A, Matsui H, Asou H, Ozaki Y, Aki D, Kanai A, Takubo K,
            Suda T, Nakamura T, Wolff L, Honda H and Inaba T.
  TITLE     Haploinsufficiency of SAMD9L, an endosome fusion facilitator,
            causes myeloid malignancies in mice mimicking human diseases with
            monosomy 7
  JOURNAL   Cancer Cell 24 (3), 305-317 (2013)
   PUBMED   24029230
REFERENCE   2  (bases 1 to 1336)
  AUTHORS   Li J, Dong Y, Lu X, Wang L, Peng W, Zhang XC and Rao Z.
  TITLE     Crystal structures and biochemical studies of human
            lysophosphatidic acid phosphatase type 6
  JOURNAL   Protein Cell 4 (7), 548-561 (2013)
   PUBMED   23807634
REFERENCE   3  (bases 1 to 1336)
  AUTHORS   Mootha VK, Bunkenborg J, Olsen JV, Hjerrild M, Wisniewski JR, Stahl
            E, Bolouri MS, Ray HN, Sihag S, Kamal M, Patterson N, Lander ES and
            Mann M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
REFERENCE   4  (bases 1 to 1336)
  AUTHORS   Takayama I, Daigo Y, Ward SM, Sanders KM, Walker RL, Horowitz B,
            Yamanaka T and Fujino MA.
  TITLE     Novel human and mouse genes encoding an acid phosphatase family
            member and its downregulation in W/W(V) mouse jejunum
  JOURNAL   Gut 50 (6), 790-796 (2002)
   PUBMED   12010880
REFERENCE   5  (bases 1 to 1336)
  AUTHORS   Hiroyama M and Takenawa T.
  TITLE     Isolation of a cDNA encoding human lysophosphatidic acid
            phosphatase that is involved in the regulation of mitochondrial
            lipid biosynthesis
  JOURNAL   J Biol Chem 274 (41), 29172-29180 (1999)
   PUBMED   10506173
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC099131.1.
            
            On Aug 12, 2005 this sequence version replaced XM_215655.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC099131.1, SRR8487231.36823.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1336
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..1336
                     /gene="Acp6"
                     /note="acid phosphatase 6, lysophosphatidic"
                     /db_xref="GeneID:295305"
                     /db_xref="RGD:1306336"
     exon            1..201
                     /gene="Acp6"
                     /inference="alignment:Splign:2.1.0"
     CDS             19..1260
                     /gene="Acp6"
                     /EC_number="3.1.3.2"
                     /codon_start=1
                     /product="lysophosphatidic acid phosphatase type 6"
                     /protein_id="NP_001026815.1"
                     /db_xref="GeneID:295305"
                     /db_xref="RGD:1306336"
                     /translation="MRVWAPVGVLASLAYCFHQRRVALAEQRAPVDRNLLELKMVQVV
                     FRHGARSPLKPLPLEDQVEWNPKLLEIPPQTRFEYTVANLAGGPKPHSHYDTEYHRTV
                     LRGGMFAGQLTKVGMQQMFALGERLRKNYVEDIPFLSPIYNPQEVFVRSTNMFRNLES
                     TRCLLAGLFQRQKESVIIHTDEAISEVLYPNYQSCWSLREKTRGRKKAAISQPGILED
                     LEKVKAGVGIADSDNVDFFILLDNMVAEEAHSLLSSPALKRFAQLIEQRAVDMALYML
                     QQEDRESIQMAVGPFLYILEGNLLKAVDPSTPPSKTRKMYLYATHDVTLLPMLLALGI
                     FDNKWPPFAVDLTVELYQHQESKEWFVRLSYNGQEQVPRGCPDKLCPLDKFLNTMSAY
                     SVSPEKYRRLCSQTRIMELGE"
     exon            202..330
                     /gene="Acp6"
                     /inference="alignment:Splign:2.1.0"
     exon            331..461
                     /gene="Acp6"
                     /inference="alignment:Splign:2.1.0"
     exon            462..538
                     /gene="Acp6"
                     /inference="alignment:Splign:2.1.0"
     exon            539..626
                     /gene="Acp6"
                     /inference="alignment:Splign:2.1.0"
     exon            627..759
                     /gene="Acp6"
                     /inference="alignment:Splign:2.1.0"
     exon            760..860
                     /gene="Acp6"
                     /inference="alignment:Splign:2.1.0"
     exon            861..956
                     /gene="Acp6"
                     /inference="alignment:Splign:2.1.0"
     exon            957..1122
                     /gene="Acp6"
                     /inference="alignment:Splign:2.1.0"
     exon            1123..1312
                     /gene="Acp6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcttccacag cctccagcat gcgcgtgtgg gcccccgtgg gtgtcctggc ttctctggct
       61 tactgcttcc accagcggag ggtggctctg gccgagcagc gggcgccggt ggaccgcaac
      121 ttactggagc tgaaaatggt gcaggtggtg tttcgacacg gggcacggag tccgctcaag
      181 ccgctcccgc tggaggacca ggtggagtgg aaccccaagc ttttagagat ccctcctcaa
      241 actcggtttg agtacactgt cgccaatcta gctgggggcc cgaaacctca ttctcattac
      301 gacactgaat accacaggac cgtcttgagg ggtggcatgt ttgctgggca gctgaccaag
      361 gtgggcatgc agcagatgtt tgcccttgga gagagactga ggaagaatta cgtggaagat
      421 atccccttcc tttcgccaat ctacaaccca caagaggtct tcgttcgctc caccaacatg
      481 tttcggaatc tggaatctac tcggtgcttg ctggctgggc ttttccaacg tcagaaagaa
      541 tctgtcatca tccataccga tgaggcaatc tctgaagtcc tgtaccccaa ctatcagagc
      601 tgctggagcc tgagagagaa gaccaggggc cggaagaagg ctgccatttc tcagccaggc
      661 atcttggagg atttggaaaa ggtgaaggct ggggtgggca tcgccgacag tgacaacgtg
      721 gacttcttca ttctcctgga caacatggtt gctgaagagg cacacagcct tctaagctcc
      781 ccggcactga agagatttgc ccagctgatt gagcagagag ctgtggacat ggccttgtac
      841 atgctgcaac aggaagacag ggaaagtatc cagatggccg tgggcccatt cctctacatc
      901 ctggagggaa acctgctcaa agctgtggac ccttccaccc cacccagcaa gaccaggaag
      961 atgtacctct atgcaacgca cgatgtaacc ctcctgccta tgctgttggc cttggggatt
     1021 tttgacaaca agtggccccc gtttgctgtt gacctgaccg tggaactcta ccagcaccaa
     1081 gaatctaagg agtggtttgt gcggctctcc tacaacgggc aggagcaagt accaagaggc
     1141 tgccccgaca agctctgtcc actggacaag ttcttgaaca ccatgtcagc ttactctgtg
     1201 agcccagaaa aataccgaag actgtgctcc caaacacgga taatggaact tggagagtga
     1261 cttctttaca cagacaagtt gatttttaaa taaagtgcct ttatataaaa gaaaaaaaaa
     1321 aaaaaaaaaa aaaaaa
//
