LOCUS       XM_039111956            1695 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus acid phosphatase 4 (Acp4), transcript
            variant X11, mRNA.
ACCESSION   XM_039111956
VERSION     XM_039111956.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111956.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1695
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1695
                     /gene="Acp4"
                     /gene_synonym="Acpt"
                     /note="acid phosphatase 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:308569"
                     /db_xref="RGD:1308270"
     CDS             33..1214
                     /gene="Acp4"
                     /gene_synonym="Acpt"
                     /codon_start=1
                     /product="testicular acid phosphatase isoform X5"
                     /protein_id="XP_038967884.1"
                     /db_xref="GeneID:308569"
                     /db_xref="RGD:1308270"
                     /translation="MAEPRSQGHTVGPLLLLLLLLLPPQALPEGPLLFVALVFRHGDR
                     APLASYPTDPHKEAASTLWPRGLGQLTKEGIRQQLELGRFLRRRYKAFLSPEYRREEV
                     YIRSTDFDRTLESAQANLAGLFPEAAPGSPEADWKPIPVHTVPVSEDKLLRFPMRSCP
                     RYHELLRESTEAADYQEALEGWTDFLTRLGNFTGLSLVGEPLRRAWKVLDTLICQRAH
                     GLALPSWASPDVLRTLSQISALDIRAHVGPPRAAEKAQLTGGILLDAILSNFSRAQRL
                     GLPLKMVMYSAHDSTLLALQGALGLYDGNTPPYAACMAFEFRGSSREPEEEDGENVTV
                     SLIYRNDTSRPPLPLRVPGCPAPCPLGRFQQLTAPARPPAHGAPCHGSYEPASPPGGN
                     L"
ORIGIN      
        1 gaggctgagc tcagcgtctg ctctctgtgg aaatggctga gccccggtct caaggccaca
       61 ccgtcggacc cttgctgctg ctgctgctgt tgctgctgcc accccaggcc ctgccggagg
      121 ggcccctgct atttgtggct ctggtgttcc gacatggcga ccgggcccca ctggcctcct
      181 accccacaga tccacacaag gaagctgcct ccaccttgtg gccccgaggt ttgggccaac
      241 tgactaagga gggcatccgc cagcagctgg aactgggccg atttctgagg aggcgttaca
      301 aggccttcct gagccctgag tacaggcgcg aagaggtgta catccgcagc acagactttg
      361 accggacatt ggagagtgca caggccaacc tggctgggct cttccccgag gctgcccctg
      421 gaagtcctga ggctgactgg aagcccattc cagtgcacac agtgcctgtg tctgaggaca
      481 agttgctgag gttccccatg cgcagctgcc ctcgatacca tgagctgttg cgggagtcca
      541 cagaggcagc tgactaccag gaggccctgg agggctggac agacttcttg acccgcctgg
      601 gcaacttcac tgggctgtcc ctggttggag agccactccg cagagcatgg aaagttctgg
      661 ataccttgat ctgtcagcgc gcccatggtc ttgctcttcc ctcctgggcc tccccagatg
      721 tcttgaggac tctgtcacag atttccgctc tggatatcag ggcacatgtg ggcccacccc
      781 gagcagcaga aaaggcccag ctgacagggg ggattctgct ggatgccatc ctcagcaact
      841 tctctcgggc tcagcgcctg gggctgcccc tcaagatggt catgtactca gctcatgaca
      901 gcaccctgct ggccctccag ggggctctgg gcctctacga tgggaacacc ccaccttatg
      961 ctgcctgcat ggcctttgaa ttccggggga gctccaggga acctgaggag gaagatggag
     1021 agaatgtcac tgtctctctc atctaccgca atgacacctc tcgcccaccc ctgccactca
     1081 gggtccctgg gtgcccagct ccctgtccac ttgggcgctt ccagcagctg actgctccag
     1141 cccggcctcc agctcacggg gccccctgcc atggttctta tgagcctgcc agccccccag
     1201 gtgggaacct gtagcctgag agcacacagg actgaactgc cttaagcaac tctaccccgg
     1261 cattacttcc tactggtagc agagcagatg gaggtagggg ctctcccagg gcaccaaggt
     1321 aaccagtacc ttctgtaagc tccactacct caagccctcc ctgaagtgga gggtttaacc
     1381 cctgctgacc agcagccacc tagccattgc catcacctgg agccccatgc ccattgtctt
     1441 gtgtccacat tattctccag agcccccagc caacactggg aaagccaata ggtgacccct
     1501 gtcttgggag gtttcctatc tgggggaggt acatcaaaac ctgagatccc aaggaagcta
     1561 aggggcatac cttggaatcc taggacagcc tcaaccagaa ggtctgattc acaagaacca
     1621 aagcaaactc gaatcaaatg caggctgagg taggggatga ggccagccag tggctatgac
     1681 tggcccctac cagcc
//
