LOCUS       NM_001415677            5131 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus acyl-CoA oxidase-like (Acoxl), transcript variant
            1, mRNA.
ACCESSION   NM_001415677 XM_017591581
VERSION     NM_001415677.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5131)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Dec 22, 2022 this sequence version replaced XM_017591581.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.15335.1,
                                           SRR26643294.15098.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676784, SAMN16676785
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-196               JAXUCZ010000003.1  135514340-135514535
            197-293             JAXUCZ010000003.1  135534656-135534752
            294-377             JAXUCZ010000003.1  135555301-135555384
            378-464             JAXUCZ010000003.1  135559515-135559601
            465-563             JAXUCZ010000003.1  135560384-135560482
            564-678             JAXUCZ010000003.1  135565900-135566014
            679-765             JAXUCZ010000003.1  135566726-135566812
            766-838             JAXUCZ010000003.1  135568448-135568520
            839-971             JAXUCZ010000003.1  135572025-135572157
            972-1006            JAXUCZ010000003.1  135594489-135594523
            1007-1123           JAXUCZ010000003.1  135660512-135660628
            1124-1277           JAXUCZ010000003.1  135668428-135668581
            1278-1367           JAXUCZ010000003.1  135696158-135696247
            1368-1477           JAXUCZ010000003.1  135721873-135721982
            1478-1589           JAXUCZ010000003.1  135732308-135732419
            1590-1677           JAXUCZ010000003.1  135756259-135756346
            1678-1748           JAXUCZ010000003.1  135768900-135768970
            1749-1850           JAXUCZ010000003.1  135790090-135790191
            1851-5131           JAXUCZ010000003.1  135817011-135820291
FEATURES             Location/Qualifiers
     source          1..5131
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..5131
                     /gene="Acoxl"
                     /note="acyl-CoA oxidase-like"
                     /db_xref="GeneID:296138"
                     /db_xref="RGD:1306814"
     exon            1..196
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..2039
                     /gene="Acoxl"
                     /note="isoform 1 is encoded by transcript variant 1;
                     acyl-coenzyme A oxidase-like protein"
                     /codon_start=1
                     /product="acyl-coenzyme A oxidase-like protein isoform 1"
                     /protein_id="NP_001402606.1"
                     /db_xref="GeneID:296138"
                     /db_xref="RGD:1306814"
                     /translation="MEQTPEGLGLGDSSLHRYLDGEFWSLKNELRRALESSPLFQPRY
                     DLSLDEMRDLTNQRVKFVLSLPLLKRVLQDQEEKRNNFISQSFVLGEVLCMVDVSMSI
                     KCGVIFLLFGGAVNNLGSPEHVIKWFRPLKEQKYTGMFAMTEKGHGSNIRGIQTEATF
                     DCDSQEFVIDMPCENAQKMYIGNAMHGNYAAVFAQLIIEGKSQGPHCFIVPIRDENGN
                     LYPGVTAIDMMYKEGLNGVDNGILIFDKVRIPRENMLDKLGSVTPDGQYHSPIQSKSA
                     RFNAMLAILTPSRLAVTFQAMGAMKLGLMIAIRYSHSRRQFGPKGKEEVKIIEHQMQA
                     LRLMSHLATALALTFTSRHAGHILDEDILQGRELINRRSLQALMAGLKAYSTWETVRC
                     LQDCRECTGGMGYMMENRLSGLKCDTDVFVTFEGDNVVMLQVVARELLAQYSKQHKKN
                     PFLGMIQNWTETAMDKLRTSFLVFNTDTVGHLAFLLKAVNFRERVLQRSLVSRIYYKV
                     VTEKGDFFRAWNSCMHHVISLSLAHVHRVALEQFTLAVRQCPNREDQALLMKFCLLYG
                     TKLLFQERGWYLEHKYLTPAASMRIRAQLLNLCESVKDDSLKVISAFNIPHTTIHAPT
                     AGTPNTGAAEAFSPAPTQPLVQNGTRSRLAKL"
     exon            197..293
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            294..377
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            378..464
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            465..563
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            564..678
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            679..765
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            766..838
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            839..971
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            972..1006
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1007..1123
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1124..1277
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1278..1367
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1368..1477
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1478..1589
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1590..1677
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1678..1748
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1749..1850
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1851..5131
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtgaacggc ccagaagcca gaagatctga ggaggtttac tgaacagttt gtagcctcaa
       61 gtacacagat ggagcagact ccggagggcc tgggtcttgg ggactcatcg ctgcaccgct
      121 acctggacgg ggaattctgg agcctcaaga atgagcttcg cagagccctg gagagctctc
      181 ctctcttcca gcccaggtat gatttaagtt tggatgaaat gagagatttg acaaatcagc
      241 gagtgaagtt tgtcttgagt ctccctctgt taaagcgtgt actccaggat caggaagaaa
      301 aaaggaataa cttcatcagc caaagctttg tcctgggaga agtgctctgc atggtagatg
      361 tgtccatgtc tataaagtgt ggagtcattt ttctgttatt tggcggtgca gtcaacaatc
      421 ttggaagtcc tgaacatgtt atcaagtggt ttcgcccact caaggagcag aagtatacag
      481 ggatgtttgc gatgaccgag aagggccatg ggagcaacat cagagggatc cagactgagg
      541 ctacctttga ctgtgacagt caggagtttg tgattgacat gccatgtgaa aacgcccaga
      601 agatgtacat tggcaacgcc atgcatggga actatgctgc tgtcttcgcc cagctcatca
      661 tcgagggaaa gtctcaaggg ccccattgtt tcattgttcc tatcagggat gaaaatggaa
      721 acttgtaccc tggagtgaca gctattgaca tgatgtacaa agaaggtctg aatggtgtgg
      781 ataatggaat tttgatattt gacaaggttc ggattccaag agagaacatg ctggataagt
      841 taggttctgt gactccagat ggacaatacc actcacctat tcaaagcaag agtgcaagat
      901 tcaatgcaat gctggccata ctgacccctt caagactggc agtgactttc caagcgatgg
      961 gtgccatgaa gcttggactg atgatagcca tccgctatag ccacagccga aggcagtttg
     1021 gacccaaggg caaagaagag gtgaagatca ttgagcacca aatgcaggca ctgaggctga
     1081 tgtctcacct ggccacagcc ctggccctga ccttcaccag caggcatgca ggccacatct
     1141 tggatgaaga catcctccag ggaagggagc tcatcaacag acgctcgcta caggcactga
     1201 tggctgggct gaaagcctac agcacttggg agactgtccg ctgcctacag gactgtcgtg
     1261 aatgcactgg aggcatgggt tacatgatgg aaaaccgact ctcaggcctg aaatgtgaca
     1321 cagatgtgtt tgtaaccttt gaaggtgaca atgtggtcat gcttcaggtt gtggcccggg
     1381 aactgctggc ccagtacagc aagcagcata agaaaaaccc attcttgggt atgatccaga
     1441 actggactga aactgccatg gacaagctga gaaccagttt cctggtgttt aacactgaca
     1501 cagtaggaca tcttgccttt ctgctgaaag cagtgaattt tcgagaaaga gttcttcagc
     1561 gaagtttggt gtccagaatt tactataagg tggtgaccga gaagggggac ttcttcaggg
     1621 cctggaactc ctgtatgcac catgtcatct cgttgtctct ggcacacgtt cacagagttg
     1681 cactagaaca gttcacgctg gcagtgaggc agtgtcccaa cagggaggac caggctttgc
     1741 taatgaagtt ttgtctgttg tatggaacga agctgctgtt ccaggagcgg ggctggtact
     1801 tagaacataa gtacctgact cctgcggcca gcatgcggat cagggctcag ttgctgaatt
     1861 tgtgcgagtc cgtgaaggat gactccctga aggtgatctc tgccttcaat attccacaca
     1921 ccaccatcca cgcaccaaca gcgggaaccc ccaacaccgg ggctgcggag gccttctccc
     1981 cggcgcccac gcagccactg gtgcagaatg ggacgcggtc tcgactggcc aagctgtgag
     2041 ccaggcgaga aatttagtgt cccatcttcc gaatatttgg ctagaaccgg agcagagggc
     2101 aaagtggcag atgcagggca accaccttgg ggaatttcat caggcagagg aggaggtccg
     2161 gctaaggctg gcaaggagca cgacaagttg tccgggagag ggagccctag atggacgccc
     2221 cagtagcata gtgacttatc caggtctagt aacctccctg gcccttgcct tgacttctcc
     2281 cagccatggc catggatccc cagacaatcg tctcgcccac cgcacggtgc caccaaagat
     2341 ctctaccgtc agcggtgact cagattcaca gagacttcga aagacattgg ggctgggtga
     2401 aaaaaaaatc aaaacataaa aatcaaacac ccttaggcaa aaggggtgga ggaaagctcc
     2461 accctctcca agctcgggca aaagttcaac aagggatgat tagtgaatca gacttgctcc
     2521 aactctgtga ggaaatgcgc tgtcgagagc ggagagctta agcccggagt cgccctagtc
     2581 ttaccaggta ggcgatctcc ggaccgcagg atcatgcgca acaagtttct cctcgctaaa
     2641 ctgttaccta gccttcagaa aagcgtacgt gtgaaaagtt taatatatta aacggtagaa
     2701 aggtgctccg gcgacttgga aaggtaggga tggcgggtct ggggaatagt tggaataaag
     2761 tgtttttgga atttggagag attacacagg cggaaatgaa tttctcattt gtgttctgac
     2821 ttggcgttgc ccagtttcgt tctcatctct agccatcgtc tcgattccct tcctccacat
     2881 cgttggcagc ctcgggaagg caccggtgat ccactggccc ttcccacctt gctcttcccc
     2941 gccgtcaact ccgatcccag gagttctccc gacccaaccc tagaaactgc aagggcccaa
     3001 atgcccgcgg ctaccttact tgaggcactt ggtggaagct cccctgactg ccttgttcgc
     3061 gggtgatgca agagcctccg cctccagccc ggcttcctaa ttcagcccta aataagagca
     3121 catagcccag tccgttgctt tccccagtgc ctgtaaattt tcttttagtg tgtccagggt
     3181 tgcaaaatcg gaagactcca gagcaacctg ctcctacgaa gaaacaccgg agctttcccc
     3241 acccccaacc cccccatccc tgtgtggttc ttctctagtc taaggctgag gcgcctggct
     3301 gcccgctgag ggcgtggagc aggcagactt gttactggtt ttggactccc ggagtagcag
     3361 cagcagattg ggctgcatgg gtgggatgcc gagtggtcgg tcaaggcaca gtactggttc
     3421 acagccttgg tcaagacaga cctgcatcca tgcccttgcc ctgtgctctc ttatagcgat
     3481 cgtccctcac ctccagcaag gctttgtcct gagcccccca gtttccctgg gaaccaataa
     3541 cttcttaacc aataactcgc tcaggattca cctaagagcc aagatttagc ctggggcttt
     3601 gctgtgtcac cgtgacgtta ggtccgctta taaacatcaa aatgaccaag atggtccaac
     3661 ggtgggacga caggccacct gacacttgtt cctcatgaaa aggccatgtc cctcttgctg
     3721 ccagcctgga tgcaggttgg gtagccctta aatcgagttt ctttaatcct cacgtgtggg
     3781 gacgatccat ttccagacca gctactctcg gccgccgctg tgagagaaga ggttgggggt
     3841 ggggacgcac atggcaccat tgacttcgag acttcggtta gggtcacgaa ggcctcagga
     3901 gggtcagggg atttttcaac ccccttctgg ctttcctagc ttgccctgaa ttccgctgtt
     3961 ccgcggccgc cagcttcagc gggccgatgg gtagacagtt ccaggcggta ctctgtgagc
     4021 ccaataaatt ttgaggatcc cagtacagct catggcgcaa cagtctttat ttggtagccc
     4081 acctcctttt ccttgtttat tcttttcgag ttaactttct cattccccta ttttatctgc
     4141 tttatcgtgc acgcccatcg ctccccgaag cctccctggt ctctcaactg tccttcccac
     4201 caccagctct gcactgggga aacaaacata tagaacacaa aaacaacaac aacaaaacaa
     4261 aacaacacac acacacacac acacacacac acacacacaa aaccagggag agcctaaatg
     4321 aggacagaag gcggcggtga tgaagagtcc cgcttgtggc atagccgagg aagggcaagc
     4381 atctttctga tctgggtccc cggaggccag gaattcttgg aaaggacagt acccatcctt
     4441 gcaccaatct agtccctttg gtttggggct gagaagctcc gcaaaccaag ggagcagggg
     4501 cgcctcctga ggcttccaac tggcggccgc ggccaggctg gacacagagc agcgtgccct
     4561 gagcgccccc taagttccgc tctgcgaggt ggccgccacg ggcggaccgg gaggggcggg
     4621 tacattctga gtggaggatg ggcgtgcatg cagctgccca caggccaagt cactagggta
     4681 aacacgccgg ggtgggcggc gcacgcaaac tgcaggacag ccggtggggc caccctcccc
     4741 actacctgtc gcagcctgca cgcgccagcg gcctgggggc cgtggggggt gggacttacc
     4801 ttccggcttg cccgggccgg actgagcggg gggcggagcc cgcggtgatt gggcgccgga
     4861 gcgggggctc agtaagagca gagtggctgg ggcaggctgc tttcacttcg ctccccgcag
     4921 gcactgggtc aacagcttgt tggagctctg cggtccttgc cgccgccgcc gttgtcgttg
     4981 cagtcaccgg attcctgcag ccgctccgcg agctgtgttc cacttggatt cacaccacct
     5041 ccgctgcccc cgccgccacc gcctcggcgc ccttcccctg gccctcgtcc acccaatgtc
     5101 tgactctgat tctcggactg agaaacgcaa g
//
