LOCUS       NM_001106508            5508 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus acyl-CoA oxidase-like (Acoxl), transcript variant
            2, mRNA.
ACCESSION   NM_001106508 XM_001078760 XM_230581
VERSION     NM_001106508.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5508)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Dec 22, 2022 this sequence version replaced NM_001106508.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: SRR26643298.18434.1 [ECO:0000331]
            RNAseq introns       :: partial sample support SAMN11044071,
                                    SAMN16676784 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-196               JAXUCZ010000003.1  135514340-135514535
            197-293             JAXUCZ010000003.1  135534656-135534752
            294-670             JAXUCZ010000003.1  135541281-135541657
            671-754             JAXUCZ010000003.1  135555301-135555384
            755-841             JAXUCZ010000003.1  135559515-135559601
            842-940             JAXUCZ010000003.1  135560384-135560482
            941-1055            JAXUCZ010000003.1  135565900-135566014
            1056-1142           JAXUCZ010000003.1  135566726-135566812
            1143-1215           JAXUCZ010000003.1  135568448-135568520
            1216-1348           JAXUCZ010000003.1  135572025-135572157
            1349-1383           JAXUCZ010000003.1  135594489-135594523
            1384-1500           JAXUCZ010000003.1  135660512-135660628
            1501-1654           JAXUCZ010000003.1  135668428-135668581
            1655-1744           JAXUCZ010000003.1  135696158-135696247
            1745-1854           JAXUCZ010000003.1  135721873-135721982
            1855-1966           JAXUCZ010000003.1  135732308-135732419
            1967-2054           JAXUCZ010000003.1  135756259-135756346
            2055-2125           JAXUCZ010000003.1  135768900-135768970
            2126-2227           JAXUCZ010000003.1  135790090-135790191
            2228-5508           JAXUCZ010000003.1  135817011-135820291
FEATURES             Location/Qualifiers
     source          1..5508
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..5508
                     /gene="Acoxl"
                     /note="acyl-CoA oxidase-like"
                     /db_xref="GeneID:296138"
                     /db_xref="RGD:1306814"
     exon            1..196
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            197..293
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            294..670
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     CDS             518..2416
                     /gene="Acoxl"
                     /note="isoform 2 is encoded by transcript variant 2;
                     acyl-coenzyme A oxidase-like protein"
                     /codon_start=1
                     /product="acyl-coenzyme A oxidase-like protein isoform 2"
                     /protein_id="NP_001099978.1"
                     /db_xref="GeneID:296138"
                     /db_xref="RGD:1306814"
                     /translation="MTGWSGLFIEVPLYRLAFEVCCHLQGPQGFLQRACQGVSCLPRD
                     SRAAGIMEEKRNNFISQSFVLGEVLCMVDVSMSIKCGVIFLLFGGAVNNLGSPEHVIK
                     WFRPLKEQKYTGMFAMTEKGHGSNIRGIQTEATFDCDSQEFVIDMPCENAQKMYIGNA
                     MHGNYAAVFAQLIIEGKSQGPHCFIVPIRDENGNLYPGVTAIDMMYKEGLNGVDNGIL
                     IFDKVRIPRENMLDKLGSVTPDGQYHSPIQSKSARFNAMLAILTPSRLAVTFQAMGAM
                     KLGLMIAIRYSHSRRQFGPKGKEEVKIIEHQMQALRLMSHLATALALTFTSRHAGHIL
                     DEDILQGRELINRRSLQALMAGLKAYSTWETVRCLQDCRECTGGMGYMMENRLSGLKC
                     DTDVFVTFEGDNVVMLQVVARELLAQYSKQHKKNPFLGMIQNWTETAMDKLRTSFLVF
                     NTDTVGHLAFLLKAVNFRERVLQRSLVSRIYYKVVTEKGDFFRAWNSCMHHVISLSLA
                     HVHRVALEQFTLAVRQCPNREDQALLMKFCLLYGTKLLFQERGWYLEHKYLTPAASMR
                     IRAQLLNLCESVKDDSLKVISAFNIPHTTIHAPTAGTPNTGAAEAFSPAPTQPLVQNG
                     TRSRLAKL"
     exon            671..754
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            755..841
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            842..940
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1055
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1056..1142
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1143..1215
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1216..1348
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1349..1383
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1384..1500
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1501..1654
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1655..1744
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1745..1854
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1855..1966
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            1967..2054
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            2055..2125
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            2126..2227
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
     exon            2228..5508
                     /gene="Acoxl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtgaacggc ccagaagcca gaagatctga ggaggtttac tgaacagttt gtagcctcaa
       61 gtacacagat ggagcagact ccggagggcc tgggtcttgg ggactcatcg ctgcaccgct
      121 acctggacgg ggaattctgg agcctcaaga atgagcttcg cagagccctg gagagctctc
      181 ctctcttcca gcccaggtat gatttaagtt tggatgaaat gagagatttg acaaatcagc
      241 gagtgaagtt tgtcttgagt ctccctctgt taaagcgtgt actccaggat cagatctttc
      301 ctttttgggc ttgggccttc tggcttctgt ttgtcctgga accttggctt ttccgagcag
      361 gctgtgacag gctgccctgg atcttggtct gtgtgctgct tttggcagga gtctttgtcc
      421 cagtctaccc ccatggactt ggatgctggc cacctggcca gtactctggt taggccagcc
      481 ctggccccat gggatcctgt ggaagagttg aacagagatg acaggatgga gtggactgtt
      541 tatagaagtc cctctgtata gattggcatt cgaagtgtgc tgtcatctgc agggaccaca
      601 gggatttctt cagagagcct gccagggagt gagttgtctg ccaagggact ccagagcagc
      661 tggaatcatg gaagaaaaaa ggaataactt catcagccaa agctttgtcc tgggagaagt
      721 gctctgcatg gtagatgtgt ccatgtctat aaagtgtgga gtcatttttc tgttatttgg
      781 cggtgcagtc aacaatcttg gaagtcctga acatgttatc aagtggtttc gcccactcaa
      841 ggagcagaag tatacaggga tgtttgcgat gaccgagaag ggccatggga gcaacatcag
      901 agggatccag actgaggcta cctttgactg tgacagtcag gagtttgtga ttgacatgcc
      961 atgtgaaaac gcccagaaga tgtacattgg caacgccatg catgggaact atgctgctgt
     1021 cttcgcccag ctcatcatcg agggaaagtc tcaagggccc cattgtttca ttgttcctat
     1081 cagggatgaa aatggaaact tgtaccctgg agtgacagct attgacatga tgtacaaaga
     1141 aggtctgaat ggtgtggata atggaatttt gatatttgac aaggttcgga ttccaagaga
     1201 gaacatgctg gataagttag gttctgtgac tccagatgga caataccact cacctattca
     1261 aagcaagagt gcaagattca atgcaatgct ggccatactg accccttcaa gactggcagt
     1321 gactttccaa gcgatgggtg ccatgaagct tggactgatg atagccatcc gctatagcca
     1381 cagccgaagg cagtttggac ccaagggcaa agaagaggtg aagatcattg agcaccaaat
     1441 gcaggcactg aggctgatgt ctcacctggc cacagccctg gccctgacct tcaccagcag
     1501 gcatgcaggc cacatcttgg atgaagacat cctccaggga agggagctca tcaacagacg
     1561 ctcgctacag gcactgatgg ctgggctgaa agcctacagc acttgggaga ctgtccgctg
     1621 cctacaggac tgtcgtgaat gcactggagg catgggttac atgatggaaa accgactctc
     1681 aggcctgaaa tgtgacacag atgtgtttgt aacctttgaa ggtgacaatg tggtcatgct
     1741 tcaggttgtg gcccgggaac tgctggccca gtacagcaag cagcataaga aaaacccatt
     1801 cttgggtatg atccagaact ggactgaaac tgccatggac aagctgagaa ccagtttcct
     1861 ggtgtttaac actgacacag taggacatct tgcctttctg ctgaaagcag tgaattttcg
     1921 agaaagagtt cttcagcgaa gtttggtgtc cagaatttac tataaggtgg tgaccgagaa
     1981 gggggacttc ttcagggcct ggaactcctg tatgcaccat gtcatctcgt tgtctctggc
     2041 acacgttcac agagttgcac tagaacagtt cacgctggca gtgaggcagt gtcccaacag
     2101 ggaggaccag gctttgctaa tgaagttttg tctgttgtat ggaacgaagc tgctgttcca
     2161 ggagcggggc tggtacttag aacataagta cctgactcct gcggccagca tgcggatcag
     2221 ggctcagttg ctgaatttgt gcgagtccgt gaaggatgac tccctgaagg tgatctctgc
     2281 cttcaatatt ccacacacca ccatccacgc accaacagcg ggaaccccca acaccggggc
     2341 tgcggaggcc ttctccccgg cgcccacgca gccactggtg cagaatggga cgcggtctcg
     2401 actggccaag ctgtgagcca ggcgagaaat ttagtgtccc atcttccgaa tatttggcta
     2461 gaaccggagc agagggcaaa gtggcagatg cagggcaacc accttgggga atttcatcag
     2521 gcagaggagg aggtccggct aaggctggca aggagcacga caagttgtcc gggagaggga
     2581 gccctagatg gacgccccag tagcatagtg acttatccag gtctagtaac ctccctggcc
     2641 cttgccttga cttctcccag ccatggccat ggatccccag acaatcgtct cgcccaccgc
     2701 acggtgccac caaagatctc taccgtcagc ggtgactcag attcacagag acttcgaaag
     2761 acattggggc tgggtgaaaa aaaaatcaaa acataaaaat caaacaccct taggcaaaag
     2821 gggtggagga aagctccacc ctctccaagc tcgggcaaaa gttcaacaag ggatgattag
     2881 tgaatcagac ttgctccaac tctgtgagga aatgcgctgt cgagagcgga gagcttaagc
     2941 ccggagtcgc cctagtctta ccaggtaggc gatctccgga ccgcaggatc atgcgcaaca
     3001 agtttctcct cgctaaactg ttacctagcc ttcagaaaag cgtacgtgtg aaaagtttaa
     3061 tatattaaac ggtagaaagg tgctccggcg acttggaaag gtagggatgg cgggtctggg
     3121 gaatagttgg aataaagtgt ttttggaatt tggagagatt acacaggcgg aaatgaattt
     3181 ctcatttgtg ttctgacttg gcgttgccca gtttcgttct catctctagc catcgtctcg
     3241 attcccttcc tccacatcgt tggcagcctc gggaaggcac cggtgatcca ctggcccttc
     3301 ccaccttgct cttccccgcc gtcaactccg atcccaggag ttctcccgac ccaaccctag
     3361 aaactgcaag ggcccaaatg cccgcggcta ccttacttga ggcacttggt ggaagctccc
     3421 ctgactgcct tgttcgcggg tgatgcaaga gcctccgcct ccagcccggc ttcctaattc
     3481 agccctaaat aagagcacat agcccagtcc gttgctttcc ccagtgcctg taaattttct
     3541 tttagtgtgt ccagggttgc aaaatcggaa gactccagag caacctgctc ctacgaagaa
     3601 acaccggagc tttccccacc cccaaccccc ccatccctgt gtggttcttc tctagtctaa
     3661 ggctgaggcg cctggctgcc cgctgagggc gtggagcagg cagacttgtt actggttttg
     3721 gactcccgga gtagcagcag cagattgggc tgcatgggtg ggatgccgag tggtcggtca
     3781 aggcacagta ctggttcaca gccttggtca agacagacct gcatccatgc ccttgccctg
     3841 tgctctctta tagcgatcgt ccctcacctc cagcaaggct ttgtcctgag ccccccagtt
     3901 tccctgggaa ccaataactt cttaaccaat aactcgctca ggattcacct aagagccaag
     3961 atttagcctg gggctttgct gtgtcaccgt gacgttaggt ccgcttataa acatcaaaat
     4021 gaccaagatg gtccaacggt gggacgacag gccacctgac acttgttcct catgaaaagg
     4081 ccatgtccct cttgctgcca gcctggatgc aggttgggta gcccttaaat cgagtttctt
     4141 taatcctcac gtgtggggac gatccatttc cagaccagct actctcggcc gccgctgtga
     4201 gagaagaggt tgggggtggg gacgcacatg gcaccattga cttcgagact tcggttaggg
     4261 tcacgaaggc ctcaggaggg tcaggggatt tttcaacccc cttctggctt tcctagcttg
     4321 ccctgaattc cgctgttccg cggccgccag cttcagcggg ccgatgggta gacagttcca
     4381 ggcggtactc tgtgagccca ataaattttg aggatcccag tacagctcat ggcgcaacag
     4441 tctttatttg gtagcccacc tccttttcct tgtttattct tttcgagtta actttctcat
     4501 tcccctattt tatctgcttt atcgtgcacg cccatcgctc cccgaagcct ccctggtctc
     4561 tcaactgtcc ttcccaccac cagctctgca ctggggaaac aaacatatag aacacaaaaa
     4621 caacaacaac aaaacaaaac aacacacaca cacacacaca cacacacaca cacacaaaac
     4681 cagggagagc ctaaatgagg acagaaggcg gcggtgatga agagtcccgc ttgtggcata
     4741 gccgaggaag ggcaagcatc tttctgatct gggtccccgg aggccaggaa ttcttggaaa
     4801 ggacagtacc catccttgca ccaatctagt ccctttggtt tggggctgag aagctccgca
     4861 aaccaaggga gcaggggcgc ctcctgaggc ttccaactgg cggccgcggc caggctggac
     4921 acagagcagc gtgccctgag cgccccctaa gttccgctct gcgaggtggc cgccacgggc
     4981 ggaccgggag gggcgggtac attctgagtg gaggatgggc gtgcatgcag ctgcccacag
     5041 gccaagtcac tagggtaaac acgccggggt gggcggcgca cgcaaactgc aggacagccg
     5101 gtggggccac cctccccact acctgtcgca gcctgcacgc gccagcggcc tgggggccgt
     5161 ggggggtggg acttaccttc cggcttgccc gggccggact gagcgggggg cggagcccgc
     5221 ggtgattggg cgccggagcg ggggctcagt aagagcagag tggctggggc aggctgcttt
     5281 cacttcgctc cccgcaggca ctgggtcaac agcttgttgg agctctgcgg tccttgccgc
     5341 cgccgccgtt gtcgttgcag tcaccggatt cctgcagccg ctccgcgagc tgtgttccac
     5401 ttggattcac accacctccg ctgcccccgc cgccaccgcc tcggcgccct tcccctggcc
     5461 ctcgtccacc caatgtctga ctctgattct cggactgaga aacgcaag
//
