LOCUS       XM_039092496            3933 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus acyl-CoA oxidase 3, pristanoyl
            (Acox3), transcript variant X2, mRNA.
ACCESSION   XM_039092496
VERSION     XM_039092496.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092496.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3933
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3933
                     /gene="Acox3"
                     /note="acyl-CoA oxidase 3, pristanoyl; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 31 ESTs, 1 long SRA read, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 79 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:83522"
                     /db_xref="RGD:69245"
     CDS             146..2248
                     /gene="Acox3"
                     /codon_start=1
                     /product="peroxisomal acyl-coenzyme A oxidase 3 isoform
                     X1"
                     /protein_id="XP_038948424.1"
                     /db_xref="GeneID:83522"
                     /db_xref="RGD:69245"
                     /translation="MGSSSERRDSVLWSDIPKGPLSAYRARASFNSKELMLFWDGQDV
                     LDFKKTIFSTLENDPLFARPFGADLPLEKERELNFLRCKRVFEYGFFNAEDMLKNPLK
                     ILVLMNCLGMYDWSLANKCVLHMLVFGSTIIGSGSEHHFKYLEKIYNLEIFGCFALTE
                     LSHGSNTKAMRTTAHYDPATQEFILHSPDFEAAKFWVGNLGKTATHAVVFAQLYTPDG
                     QCRGLHSFLVQIRDPKTLLPMPGVMVGDMGKKLGQNGLDNGFAMFHKVRIPRQNLLDR
                     TGNVTSEGTYNTPFKDVRQRLGASLGSLSSGRISIISISVVNLKLAVIIAIRFSATRR
                     QFGPTDKEEIPVLEYPLQQWRLLPYLAAAYALDHFSKTIFLDLIELQRGRQSGDHSDR
                     QAELGREIHALASAGKPLASWTAQRGIQECREACGGHGYLAMNRFGELRNDNDPNCTY
                     EGDNNVLLQQTSNYLLSLLEHPLQDGAHFTSPLKTVNFLEAYPGILGQKFMASSKADW
                     LDSEAPLAAYRWLVCYLLRESHQRYCQEKKSRGSDFEARNNSQVYGCRPLALAFMELT
                     VMQRFHEHTHSSSVPPSLRTVLGRLSMLYGLWCLSQHTALLYRGGYISGEQTGKAMED
                     AILMLCVQLKDDAVALVDAIAPSDFVLGSPIGRADGELYKNLWAAVLQQSGVLERAAW
                     WPEFTANKSVANRLKSQL"
ORIGIN      
        1 gcctgatttg agtcccagga acgttcgtgg cagacaatgc ccggtatccc agttgtagtt
       61 gcttctgaga aacggggtgg caaagcaaag tccaccagat tggtaaactg tattattgag
      121 agaccggagc aaaggtgaca gtaccatggg atcctcatcg gaaagaagag acagtgtttt
      181 atggtcagac atccccaagg gcccccttag tgcctaccga gcaagagcct ccttcaattc
      241 caaggagctg atgctcttct gggacggcca ggatgtactc gacttcaaga aaaccatctt
      301 ctcaactttg gagaatgacc ctctcttcgc ccgcccattc ggggctgatc tgcctctgga
      361 gaaggaacga gaactgaact tccttcgctg caagagggtc tttgagtatg gcttcttcaa
      421 cgcagaggac atgctaaaga accccctgaa gattctagta ttgatgaact gcctgggcat
      481 gtacgactgg tccctggcca acaaatgtgt cctccacatg ttggtttttg gatctacaat
      541 tatcggttct ggttctgagc accatttcaa gtaccttgag aagatatata acctggagat
      601 ttttggctgt tttgctctca ccgaactgag tcatgggagt aataccaagg ccatgagaac
      661 aacagctcac tatgatcctg ctacccagga attcatctta cattctccag atttcgaggc
      721 tgccaaattt tgggtgggca acctgggcaa gaccgcaact catgcggtgg tgtttgccca
      781 gctgtacacg ccagatggcc agtgccgagg gctgcattcc ttcctggtgc agattcggga
      841 cccgaagacc ctgcttccca tgccaggggt gatggtcggt gacatgggga agaagttggg
      901 acagaatggc ctggataatg gattcgccat gttccacaaa gttcgaattc ctcgccagaa
      961 cctgctggac cggaccggga atgtcacctc tgagggcact tacaacaccc cctttaagga
     1021 tgtccggcag cgtttggggg catcattggg cagcctgtcc tcgggacgca tctccatcat
     1081 tagcatttct gtggtcaacc tgaagctggc tgtgatcata gctatccgat tctcagccac
     1141 gcggcgtcag tttggaccca cagataagga agagatccct gtcctcgagt atccactgca
     1201 gcaatggcgc ctacttccat acctggcagc tgcctatgcc ttggaccact tctccaagac
     1261 aatcttcttg gacctgatag agctacagcg tggccggcaa agtggggacc acagtgacag
     1321 gcaggcagag ctcggacggg agatccacgc actagcatca gcgggcaagc ccctagcctc
     1381 atggacagcc cagcggggaa ttcaggagtg ccgtgaggcg tgtgggggac acggctatct
     1441 agccatgaac cggtttggcg aactcagaaa tgacaacgat ccaaactgta cctatgaagg
     1501 tgacaacaat gtcctgctgc agcagaccag caactacctg ctcagcctcc tggagcatcc
     1561 tctccaagac ggagctcact tcacaagccc tctcaagaca gtgaacttcc tggaagccta
     1621 ccctggaatc ttgggccaga agttcatggc ctccagcaag gctgactggt tggactcaga
     1681 agcccccctg gcagcctacc gttggcttgt ttgctacctg ctccgagaga gtcatcagag
     1741 atactgtcaa gagaaaaagt ccagaggcag tgactttgaa gcaaggaaca acagccaggt
     1801 gtatggctgc cggcccctgg ccctggcctt catggagctc actgtgatgc agcgcttcca
     1861 cgagcataca cacagctcta gcgtgcctcc atctctgcgg actgtgcttg gacggctcag
     1921 catgctctac ggcctgtggt gcctgagcca acacacggcc ctgctctacc gaggtggcta
     1981 catctctggg gagcaaacag gaaaagcgat ggaggatgcc atcctgatgc tgtgtgtgca
     2041 gctgaaagac gatgcggtgg ccttggtgga cgcgattgcc ccttctgact ttgtcctggg
     2101 ctccccaatt ggcagagctg atggcgagct ctataaaaac ctgtgggcag ctgtcctgca
     2161 gcagagcggt gtgctggagc gtgcggcctg gtggcctgag ttcactgcca acaaatctgt
     2221 ggccaacagg ctgaagtccc agctgtagac acagttggag gggtgtctga gcaggagcag
     2281 ccgatccaga ggcctggacc cagacaatca gacacccacg ctggaagaca cactaaatcc
     2341 tctccttgac tctcgtcagc ctgccgtacc catccccaat ggggtatttg caaggagttt
     2401 gcacagtgtg tctccccgag ggccttggaa tttaacaaag gattttgtaa tgctatctcg
     2461 ggggcccaga taggaatgta aagttctgct caggtaaact ttgggatccg tggaagattt
     2521 tcaagatgct ctcttctctc tgctgctatc tgcttcttta accctgctgt ggggtaacca
     2581 tacgtctgtt tacctgccac ttgccactct gtaccatgga ctgtcagaat gtaatttgaa
     2641 gattttttat atgaaaaaaa atgttttatt aagtccttcg gtggcaccag aagtttccac
     2701 tgaggaaagt gctcccacaa aagacatgca ccagtttgct caccacagac acccccattg
     2761 tgtcagtaac tgcttagctg tggctttagt ccttttgttc ctaaaacagg aggaatgccc
     2821 agtgccatct gttcccgtca agtgtatctc agcaaattca cacacggcac gaccctgcca
     2881 cactggccgt agccagatct tgtgatcctg aaaggcacgt gatgccatcc cttcctgccg
     2941 tagggaggag cccatactgt tagcatttct gacaaactgt tccgagcccc aggtgcttgc
     3001 agagcctgag agcctctctc ttcgacatct gctctcggtc agccactaca ccctcccctg
     3061 ggtcggcccc ttcccagagt cccaccccag ctgaatgggg gcctgccatc ttgagtctct
     3121 gtggaacctg agggtcatgt gttcacagat gatgccctcc accggaatct atggcttttc
     3181 ccaacagtga ccactaggtc ctcccagctc ttgggctcct tgccctccaa tcctgccagg
     3241 caacaatcac ctcagccacc tgttcgcctc accatacttt tgtgtgggag cttggttatc
     3301 gtcctgtctg attggaggct gactagcatg tcacagaagt gcccatggtt agaagagtgc
     3361 tgcattaaga taagtcacat gattcccagg gtcaggcagt ctgactgcag agcgccccct
     3421 ggtggccgag gtgccaacag ataacaaatt attgaaaatg gctcattagc tagctatagc
     3481 ttctgagggg aaggagagtc agttttctct caggagtagc cactggcagg ttgatcgggc
     3541 tccattgcat gcccacacac ccaagagcat atgtgcggca cagagtggac ttgatggctt
     3601 ttgttgttgt tttgttatgt gtgcacatct atgttttcat atctaccggt tgggtatgcc
     3661 tttgtccctg ggtagggact ggctctctgg acaagtagat gtcctgttag cctgcagaca
     3721 tcacatgact cccaagaacg aatcgtgtat cctggtccct gctcctgtgc atgcacattc
     3781 ccctcctctg tcccgaggca gaggcaagtg gtgtgtgagg cctatgggca gaggccacat
     3841 tgtgaagaca aacttgtaaa ggtcccataa aaatgaaaca tttgtaaaca gtgggaaaga
     3901 cttgaataat tgcaataaag tgttaaaatt gaa
//
