LOCUS       NM_001305285            1578 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus acyl-CoA thioesterase 6 (Acot6), mRNA.
ACCESSION   NM_001305285 XM_002726768 XM_234402
VERSION     NM_001305285.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1578)
  AUTHORS   Hunt,M.C., Rautanen,A., Westin,M.A., Svensson,L.T. and Alexson,S.E.
  TITLE     Analysis of the mouse and human acyl-CoA thioesterase (ACOT) gene
            clusters shows that convergent, functional evolution results in a
            reduced number of human peroxisomal ACOTs
  JOURNAL   FASEB J 20 (11), 1855-1864 (2006)
   PUBMED   16940157
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On or before Mar 7, 2015 this sequence version replaced
            XM_234402.7, XM_002726768.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.25979.1,
                                           SRR26643298.36401.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-708               JAXUCZ010000006.1  109463513-109464220
            709-911             JAXUCZ010000006.1  109467417-109467619
            912-1578            JAXUCZ010000006.1  109471921-109472587
FEATURES             Location/Qualifiers
     source          1..1578
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q31"
     gene            1..1578
                     /gene="Acot6"
                     /gene_synonym="RGD1309669"
                     /note="acyl-CoA thioesterase 6"
                     /db_xref="GeneID:299193"
                     /db_xref="RGD:1309669"
     exon            1..708
                     /gene="Acot6"
                     /gene_synonym="RGD1309669"
                     /inference="alignment:Splign:2.1.0"
     CDS             252..1520
                     /gene="Acot6"
                     /gene_synonym="RGD1309669"
                     /EC_number="3.1.2.2"
                     /codon_start=1
                     /product="acyl-coenzyme A thioesterase 6"
                     /protein_id="NP_001292214.1"
                     /db_xref="GeneID:299193"
                     /db_xref="RGD:1309669"
                     /translation="MAATLTLEPAGRSCWDEPLSIVLSGLAPEQSVTLCSALRDEKGV
                     LFRAHALYRADVQGELNLALAPALGGSFTGLEPMGLIWAMEPERPFWRLIKRDVQTPL
                     VVELEVLDGHEPDGGQRLAQAVHERHFMAPGVRRVPVREGRVRATLFLPPGEGQFSGI
                     IDLYGSIGGLREYRASLLAGHGFAVLALAYFQFEDLPEYLSQVHLEYFEEAVTFMLHH
                     PQVKGPNIGLLGISKGGDLCLSMAAFLKDKITATVLINACVANTLAPLYYKDMFIPNL
                     GYDPTKHKILESGLLDLGDIWNNPLEEPNHQSLISLEKAQGPFLFIVGMDDHSWKSDV
                     YARIASRRLQAHGKDRPQIIYYPKSGHCIDPPYFPPPIAFVPTAVSGPILSGGEPRAQ
                     SRAQLDAWQRIQTFFRKYLNGEKPARHSKM"
     exon            709..911
                     /gene="Acot6"
                     /gene_synonym="RGD1309669"
                     /inference="alignment:Splign:2.1.0"
     exon            912..1578
                     /gene="Acot6"
                     /gene_synonym="RGD1309669"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcctcaacac tatgtggaca gaatcctctg tggtggagag tgccactgct gctactctga
       61 cctacatcct tcctgtatat agtcagcctg ttttctgtcc ctgtcttgtc tgaggcacgt
      121 gagccaggga tagggaactc tcagagacgg cactaggttt cctctacagc aggtcaggct
      181 ctcctccaca gcaggccagg ctccgctccg aactcaactc gcgtggcact acacgaggtt
      241 tccagctccc tatggcggcg acgcttactc tggagcccgc cggccgcagt tgctgggacg
      301 agccgctgag catcgtcctg agcggcctgg ccccggagca gtctgtcaca ctatgctcgg
      361 ccctgcgcga cgagaagggt gtgctcttcc gagcccacgc gctctaccgc gctgatgtcc
      421 aaggagagct gaacctggcg ctcgctcccg cgctgggcgg cagcttcacg gggctcgagc
      481 ccatggggct gatatgggcc atggagcccg aacggccttt ctggcgtttg atcaagcgcg
      541 acgtgcagac gcccttagtg gtggagctgg aggtgctgga cggacacgag cccgacggcg
      601 gtcagcggct tgcacaggcg gtgcacgagc gtcacttcat ggctcccggg gtgcggcgcg
      661 tgcccgtgcg cgagggcagg gtgcgcgcca cgctcttcct gcccccaggc gagggccagt
      721 tctctgggat tattgacttg tatggaagta ttggtggctt acgtgagtac agagccagcc
      781 tcctggctgg gcatggtttt gctgtgcttg ctctggctta tttccaattt gaagacctcc
      841 ctgaatattt gagccaagtg catctggagt actttgaaga agctgtgacc ttcatgctgc
      901 accatccaca ggtgaaaggt ccaaatattg ggcttcttgg gatctccaaa ggcggtgacc
      961 tgtgcctctc gatggctgct ttcctgaagg acaaaatcac agccactgtc cttataaatg
     1021 cctgtgtggc caacacctta gcccctctgt attacaagga tatgtttatt cctaatcttg
     1081 ggtatgaccc aacaaaacat aagatcttgg agtcaggcct tttggatttg ggggatattt
     1141 ggaacaaccc actggaggaa cccaaccacc aaagtcttat ttcattggag aaggcccagg
     1201 gacccttctt gtttattgtg ggcatggatg atcatagctg gaaaagtgac gtctatgctc
     1261 gtatagccag tagacgtcta caagcccacg gaaaagacag accccagata atctactatc
     1321 caaaaagtgg tcactgtatt gacccaccct attttcctcc tcccatagcc tttgtaccta
     1381 cggcagtgag tggaccgata ctctctggag gtgagccaag ggctcagtca agggcacagt
     1441 tggatgcctg gcaacgcatt caaactttct tccgaaagta tctcaatggt gaaaaacctg
     1501 ccaggcatag caaaatgtaa cattgtgatt ctagagaaag ttctaatgat gccatgcaga
     1561 ttcttttgaa tttccgga
//
