LOCUS       NM_001399254            3670 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus acyl-CoA binding domain containing 5 (Acbd5),
            transcript variant 2, mRNA.
ACCESSION   NM_001399254 XM_006254344
VERSION     NM_001399254.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3670)
  AUTHORS   Nazarko,T.Y., Ozeki,K., Till,A., Ramakrishnan,G., Lotfi,P., Yan,M.
            and Subramani,S.
  TITLE     Peroxisomal Atg37 binds Atg30 or palmitoyl-CoA to regulate
            phagophore formation during pexophagy
  JOURNAL   J Cell Biol 204 (4), 541-557 (2014)
   PUBMED   24535825
REFERENCE   2  (bases 1 to 3670)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Jan 5, 2022 this sequence version replaced XM_006254344.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.61732.1,
                                           SRR26643295.55343.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-213               JAXUCZ010000017.1  90115152-90115364
            214-382             JAXUCZ010000017.1  90115514-90115682
            383-503             JAXUCZ010000017.1  90122023-90122143
            504-576             JAXUCZ010000017.1  90124695-90124767
            577-691             JAXUCZ010000017.1  90126484-90126598
            692-826             JAXUCZ010000017.1  90130651-90130785
            827-1018            JAXUCZ010000017.1  90133567-90133758
            1019-1125           JAXUCZ010000017.1  90134433-90134539
            1126-1354           JAXUCZ010000017.1  90138522-90138750
            1355-1557           JAXUCZ010000017.1  90143032-90143234
            1558-1599           JAXUCZ010000017.1  90147103-90147144
            1600-1709           JAXUCZ010000017.1  90147490-90147599
            1710-3670           JAXUCZ010000017.1  90154326-90156286
FEATURES             Location/Qualifiers
     source          1..3670
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17q12.3"
     gene            1..3670
                     /gene="Acbd5"
                     /note="acyl-CoA binding domain containing 5"
                     /db_xref="GeneID:307170"
                     /db_xref="RGD:1309411"
     exon            1..213
                     /gene="Acbd5"
                     /inference="alignment:Splign:2.1.0"
     CDS             199..1722
                     /gene="Acbd5"
                     /note="isoform 2 is encoded by transcript variant 2;
                     acyl-CoA-binding domain-containing protein 5;
                     acyl-Coenzyme A binding domain containing 5"
                     /codon_start=1
                     /product="acyl-CoA-binding domain-containing protein 5
                     isoform 2"
                     /protein_id="NP_001386183.1"
                     /db_xref="GeneID:307170"
                     /db_xref="RGD:1309411"
                     /translation="MLFLSFYAGSWESWICCCCVIPVDRPWDRGRRWQLEMADTRSVY
                     ETRFEAAVKVIQSLPKNGSFQPTNEMMLRFYSFYKQATEGPCKLSRPGFWDPIGRYKW
                     DAWSSLGDMTKEEAMIAYVEEMKKIIETMPMTEKVEELLHVIGPFYEIVEDKKNSKSS
                     DLTSDLGNVLTSSNAKAVNGKAESSDSGAESEEEEAQEELKGAEQSGSDDKKMMTKST
                     DKNLEIIVTNGYKDSFAQDSDIHTDSSRSARRSEDKKPTDQSSQQTGNTVLCVHQDTN
                     EDPGEDASGVHHLTSDSDSEVYCDSMEQFGQEEYYLGGDPAQHLEGSGFCEDAQLSPG
                     NGSIGKMQMRAVKGKGEVKHGGEDGRSSSGTPHREKRGGESEDISGVRRGRVGHRMPH
                     LSEGTKGRQVGSGGDGERWGSDRGSRGSLNEQIALVLIRLQEDMQNVLQRLHKLETLT
                     ASQAKLSWQTSNQPSSQRPSWWPFEMSPGALAFAIIWPFIAQWLVHLYYQRRRRKLN"
     exon            214..382
                     /gene="Acbd5"
                     /inference="alignment:Splign:2.1.0"
     exon            383..503
                     /gene="Acbd5"
                     /inference="alignment:Splign:2.1.0"
     exon            504..576
                     /gene="Acbd5"
                     /inference="alignment:Splign:2.1.0"
     exon            577..691
                     /gene="Acbd5"
                     /inference="alignment:Splign:2.1.0"
     exon            692..826
                     /gene="Acbd5"
                     /inference="alignment:Splign:2.1.0"
     exon            827..1018
                     /gene="Acbd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1019..1125
                     /gene="Acbd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1126..1354
                     /gene="Acbd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1355..1557
                     /gene="Acbd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1558..1599
                     /gene="Acbd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1600..1709
                     /gene="Acbd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1710..3670
                     /gene="Acbd5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggggtttgct gcacggcggc ggcagcggtg gaggctagtg ggtcctccgg tgactctggg
       61 gcggggctgt ggggagggtg cccaccgact gcaggacttc tcaggaatgg ggggtgtggc
      121 tggtcgacca gcatcttccg ggtgggagaa agggtccgct attaccggcg gcgcaacctc
      181 caaggcctgc tgctagagat gctcttcctc tcgttttatg caggctcttg ggaaagctgg
      241 atctgctgct gctgtgtgat tcccgtggac agaccttggg accggggccg gcgctggcag
      301 ctggagatgg cggacacacg atcagtgtat gaaaccaggt ttgaggcggc cgtgaaggtg
      361 atccaaagtt tgccgaaaaa tggatcattc cagccaacga atgaaatgat gctcaggttc
      421 tacagcttct acaagcaggc aactgaagga ccctgtaaac tctcaaggcc cgggttctgg
      481 gatcctattg gaagatataa atgggatgct tggagttccc tgggtgatat gactaaagaa
      541 gaagccatga ttgcatatgt tgaagaaatg aaaaagatta ttgaaactat gcccatgact
      601 gagaaagtag aagagttgct acatgttata ggtccattct atgagattgt agaagacaaa
      661 aagaacagca agagttctga cttgacctca gatcttggta atgttctgac ctcttcaaat
      721 gccaaagctg ttaatggtaa agcagagagc agtgatagtg gggctgagtc tgaggaagaa
      781 gaggcccaag aagagttaaa aggagcagaa cagagtggca gtgatgataa gaaaatgatg
      841 acaaaatcaa cagataagaa tttggaaatc attgttacca atggctataa agatagcttt
      901 gctcaggaca gtgacattca tactgattct tcccggagtg ccagacgaag tgaagacaaa
      961 aagcctacag accagagctc tcagcagaca ggaaacactg tcctctgcgt tcaccaagat
     1021 acaaacgaag accccggtga agacgcttca ggagtacatc atctgacaag tgactcagat
     1081 agtgaagtat actgtgattc tatggagcaa tttggacaag aggagtatta cttaggtggt
     1141 gatcctgctc agcacttgga aggttctggt ttttgtgaag atgctcaact ctctcctggg
     1201 aatggcagca ttgggaaaat gcagatgaga gcagtcaagg gaaaaggtga agtgaagcac
     1261 ggaggagaag atggcagaag tagcagtgga acgccgcacc gtgagaagag aggcggagag
     1321 agtgaggaca tctccggtgt caggagaggg agagtagggc atagaatgcc acatttgagt
     1381 gaaggaacca agggtcggca agtaggaagt ggaggtgatg gagaacgctg gggctcagac
     1441 cgagggtcca gaggcagcct caatgagcag atcgctcttg tgctcattag attgcaggag
     1501 gacatgcaga atgttcttca gagacttcat aaactggaaa cactaactgc ttcgcaggcg
     1561 aaattatcat ggcagacaag taatcagccc tcctcacaga gaccatcttg gtggcccttt
     1621 gagatgtccc ctggtgcatt agcttttgct attatatggc cttttattgc tcagtggttg
     1681 gtgcatttgt attatcaaag aaggagaaga aaactaaatt gaagacatgg ccttttactc
     1741 aagaagactg ctgggcctgg atgacctaag agatggattg gaaatgaagt ggaattcaca
     1801 agaaaatctc agtttgtgat gattacattt ctttttttgt ccagtagttt ggtttatata
     1861 cataaatatt ctttgcacta cacaagatga taacaattta aagactaata ttgctgatac
     1921 ttgaaaaatc aatctcaact agattttaag tagcatccat agacttactc tttttgagct
     1981 tgaaggactt taaattatta attattgttc agtaacaatc acctgatttt ctcccataag
     2041 aattataagc tgcatttcta aggcatagct acaattatga gatagaattt ataattttta
     2101 cttttctaaa ttaaacacaa gaaagaatac aaaaacaagc atggctttta aatgaggcta
     2161 aatcaattgt ttcagtcact gaagtgtcag ccatgtagca gaaaactgac ggaagaatcc
     2221 tttacattct ttgtggtctg tacagaagac tgggctctat ttagtggctt gatttccctg
     2281 gcttgctcag gggaactcag aaaatcaccg cccttgtact gtgcttactg tttacaaacg
     2341 atccggtgaa cagactggaa gatggagatg gtgaagaata ggcctcatgc cagctctaca
     2401 gatggttaat cagattttat ccagccacac ccacttcatc ctctggaacc attttttctt
     2461 taagtgagga tatctactgt ctgcttcata gggtgctttg caataaaatg aaaacttatt
     2521 tatactgttt ttactaaggt aacaatcgca tgaaaatcct tttttctcca agtggtaaat
     2581 gacagtctgg attcctaacc tcttagtgcc tcagttttcc ggggtatact tcacaaggta
     2641 tcagaagtac cttcagtcca caggtctcta cgtccacgtg attaaggaat gcctaactaa
     2701 tggaaactta cgttccttct agccattaga acaaaaggaa gattaattta gatcctggga
     2761 gactatattt gaaaaataat cttccttgtg tacttaccca aacctgtgct aggaaatata
     2821 ctttatgctt tgaagattta acttaagaac tttatagcaa acccttttct gcttttcctt
     2881 tggagatagt gttggtagct catgccaacc cccggttcac tgtgtagtta aagaggacct
     2941 tgaacacctg atggtcctgt ctctactgct tttcagtttc tgggccacag gcatgtacca
     3001 gggtagccag cttggatagt aaaacatttt aatttgttct tgtttttaac gatgctaaat
     3061 gatgctgggg gcattagcat tgggtactga attattttca gtaagaggga aagaatccat
     3121 ctccagaata tagaattttt cttaaaaaaa aaaaaagtat gagaacttaa tttgctttac
     3181 aagaaaaatt tttaaaactg taacttcatt ttaaaattgt gtatcacaac ttggtttatc
     3241 tgcctaaaat gatctactag ctgttgctta tgattaaaaa aaaaagcaag taactgaatt
     3301 attatggaaa actttagacc tgtggagtgg ttttaaatta caaaagaagt tggtatgata
     3361 aagtgatggc tttttttctt acataaataa aatgcaaatc aaagatgtaa ccagttgtga
     3421 ttcattgcaa gtagtcaagt gtcactaact cctaaggaca accatttgta tcttataaat
     3481 cagaattact tatagtttga aagcactttg cacacaattc ttgtatataa aggatgtaat
     3541 tacaggatat agtggtaatg ctttaaaaca tgaaccccat tttaaaaatt gacagctatg
     3601 gtattttttt aatgatcagc tttttttgtt tattgtaaac ctaagttaaa aataaaaggt
     3661 taatgagaaa
//
