LOCUS       XM_039080069            5789 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ankyrin repeat and BTB domain
            containing 3 (Abtb3), transcript variant X1, mRNA.
ACCESSION   XM_039080069
VERSION     XM_039080069.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080069.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5789
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5789
                     /gene="Abtb3"
                     /note="ankyrin repeat and BTB domain containing 3; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 20 ESTs, 6 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     48 samples with support for all annotated introns"
                     /db_xref="GeneID:314675"
                     /db_xref="RGD:1308647"
     CDS             516..3857
                     /gene="Abtb3"
                     /codon_start=1
                     /product="ankyrin repeat and BTB/POZ domain-containing
                     protein 3 isoform X1"
                     /protein_id="XP_038935997.1"
                     /db_xref="GeneID:314675"
                     /db_xref="RGD:1308647"
                     /translation="MARRGKKPVVRTLEDLTLDSGYGGAADSVRSSNLSLCCSDSHPA
                     SPYGGSCWPPLADSMHSRHNSFDTVNTALVEDSEGLDCAGQHCSRLLPDLDEVPWTLQ
                     ELELLLLRSRDPRAGPAAPGSLPKDALAKLSMLVSRALVRIAKEAQRLSLRFAKCTKY
                     EVQSAMEIVLSWGLAARCTAAALAALSLYNMSSAGGDRLGRGKSARCGLTFSVGRVYR
                     WMVDSRVALRIHEHAAIYLTACMESLFRDIYTRVLASGLPRSCSGPGPGSSSSSGPGP
                     GSGPGAPTADKERETPGGGAASGGPCSAASSASGGSSCCAPPATAATAVPPATATAAA
                     PTAANHHHHHHHHTLHEAPKFTVETLEHTVNNDSEIWGLLQPYQHLICGKNASGVLSL
                     PESLNLHRDPQRPSKPGELPMFSQSELRTIEQSLLATRVGSIAELSDLVSRAMHHLQP
                     LNVKHHGNGTPLHHKQGALYWEPEALYTLCYFMHCPQMEWENPNVEPSKVNLQVERPF
                     LVLPPLMEWIRVAVAHAGHRRSFSMDSDDVRQAARLLLPGVDCEPRQLKADDCFCASR
                     KLDAVAIEAKFKQDLGFRMLNCGRTDLVKQAVSLLGPDGINTMSEQGMTPLMYACVRG
                     DEAMVQMLLDAGADLNVEVVSSPHKYPSVHPETRHWTALTFAVLHGHIPVVQLLLDAG
                     AKVEGSVEHGEENYSETPLQLAAAVGNFELVSLLLERGADPLIGTMYRNGISTTPQGD
                     MNSFSQAAAHGHRNVFRKLLAQPEKEKSDILSLEEILAEGTDLAETAPPPLCASRNSK
                     AKLRALREAMYHSAEHGYVDVTIDIRSIGVPWTLHTWLESLRIAFQQHRRPLIQCLLK
                     EFKTIQEEEYTEELVTQGLPLMFEILKASKNEVISQQLCVIFTHCYGPYPIPKLTEIK
                     RKQTSRLDPHFLNNKEMSDVTFLVEGRPFYAHKVLLFTASPRFKALLSSKPTNDSTCV
                     EIGYVKYPIFQLVMQYLYYGGPESLLIKNNEIMELLSAAKFFQLEALQRHCEIICAKS
                     VNTDNCVDIYSHAKFLGVTELSAYCEGYFLKNMMVLIENEAFKQLLYDKNGEGTGQDV
                     LQDLQRTLAIRIQSIHLSSSKGSVV"
ORIGIN      
        1 ggctcagcag ggttttgcag ccgcctggct acagcgcttt agtgcggggc gggagctcag
       61 agaaccgcgg cccggatccg ggagccgggg ggagcccgct gccggccgag ctgcggcggc
      121 cgtatctggg gcgatccagg tcctatcgac actgtggccg gcgctcggag gcttcagcat
      181 ccgtctggtc ccagggagga gaggaccaga cacttttatt ttggatgaaa ggcgcgggtc
      241 ctggcgggag cttccttccc ggcctggctc gccgctcagt gagccctagc tctggcccgg
      301 actccagaag atgatttcag gttccgccgt gtgtcttcca gcggtgacgg ctcagggagg
      361 caggcgaaag tagtgacact tgctggcaac gccaggtggg aaagtgaacc taggcgacga
      421 ggagccccac tgtccccgag gaccccggtg tccagagttc cttgtctctc cttcccctcg
      481 gctccacggc ggctgcagca tgaagtggcg cagcgatggc caggagaggt aagaagccgg
      541 tggtgcgaac gctggaagat ctgacgctgg actcgggtta tggtggcgcg gcggactctg
      601 tgcgctcctc caacttgtct ctgtgctgtt ctgactcgca cccggcgtcc ccgtatggcg
      661 ggagctgctg gccgcctcta gctgactcca tgcacagccg gcacaacagc tttgataccg
      721 tcaacactgc cctggtggaa gactccgagg ggctggactg cgccggtcag cactgctcgc
      781 ggttgctgcc ggacctcgac gaggtcccct ggaccctcca ggaactggag ttgctgctgc
      841 tgcgctcgcg ggatcctcgg gcaggcccag cagcccccgg cagcctgccc aaggacgcgc
      901 tggccaagct ctcgatgctg gtaagccggg ctctggtgcg catcgctaaa gaggcgcagc
      961 gcctgagcct gcgcttcgcc aagtgcacca agtacgaggt ccagagtgct atggagatcg
     1021 tcctgtcctg gggcctggcg gctcgttgca ccgctgccgc gctggccgcg ctgtctctct
     1081 ataacatgag cagtgctggc ggcgaccgct tgggccgtgg caagtcggct cgctgcggcc
     1141 tcaccttctc cgtgggccgc gtgtaccgct ggatggtgga cagccgcgtg gcgctgcgca
     1201 tccacgagca tgccgccatc tacctgaccg cctgtatgga gagtctcttt cgggacatct
     1261 acacacgggt gttggcctcc gggctacctc gtagctgtag cggtcccggc cctggctcca
     1321 gctccagttc tggcccaggc cccggctcag gcccgggtgc ccctacagcg gataaggagc
     1381 gcgagacgcc gggaggggga gcggcgagcg gtggcccttg cagcgcagcc agcagcgcca
     1441 gcgggggcag tagttgttgc gccccgccag ccacagcggc gaccgcagtc ccgccagcca
     1501 cagccaccgc cgccgcccct accgccgcca accaccacca ccaccaccac caccacacgc
     1561 ttcacgaagc gcccaaattc accgtggaga ccctggagca cacggtcaac aacgattcag
     1621 aaatctgggg gctcttgcag ccctaccagc acctcatctg tgggaagaac gccagcggtg
     1681 tgctgagcct tccagagagc ttgaacctgc accgagaccc acagcgcccc agcaagccgg
     1741 gagagctacc catgttcagc cagtcggagc tgaggactat cgagcagtcc ctgctggcca
     1801 cacgggtggg cagcatcgcc gagctcagtg atcttgtgtc ccgggcgatg caccatctac
     1861 agcccctcaa tgtgaaacac catggcaatg gtactcccct gcaccacaag cagggggcgc
     1921 tctactggga gccggaggcc ctgtacacgc tctgctactt catgcactgc ccgcaaatgg
     1981 agtgggaaaa tcccaacgtg gaaccttcca aggtcaacct ccaggtggaa aggcccttcc
     2041 tcgtgctgcc ccctctgatg gagtggatcc gagtggccgt ggcgcacgct ggccaccgcc
     2101 gcagcttttc tatggacagc gacgatgtcc gccaagccgc caggcttctg ttgcctggag
     2161 tggactgcga gccgcgccag ctcaaggcgg acgactgctt ttgcgcttct cggaagctgg
     2221 acgcagtggc catcgaagcc aagttcaagc aggacttggg cttccggatg ctgaactgtg
     2281 gacggaccga cctggtgaag caggcagtgt ctttgctggg gccggatgga atcaacacca
     2341 tgagcgaaca gggcatgacc cccttgatgt acgcctgcgt ccgtggggac gaggcgatgg
     2401 tgcagatgct gctggatgcc ggagctgacc tgaatgtgga ggttgtcagt tctcctcata
     2461 aatatccatc cgtccacccc gagacccgcc attggacggc tctgactttt gctgtgttac
     2521 atggacatat tcctgtagtt cagctcctcc tggacgctgg ggccaaggtg gaaggctcgg
     2581 tggaacatgg cgaggagaac tattcagaaa ctcctctcca actcgcagcg gctgttggaa
     2641 attttgagct ggttagcttg ctgttggagc gtggtgcgga tcccctgata ggaaccatgt
     2701 acaggaatgg aatttccaca accccccagg gtgatatgaa ctctttcagc caggccgcag
     2761 cccatggaca caggaatgtg ttccgcaaac tcctcgctca gccagagaag gagaagagtg
     2821 atatcctgtc cctggaggag attctggctg aggggactga cctggcagaa acagccccgc
     2881 cccccttgtg tgccagccgc aacagcaagg ccaaactgag ggccctgagg gaggccatgt
     2941 atcacagcgc tgagcacggc tacgtggatg tcacaattga tatcaggagt ataggtgtcc
     3001 cctggactct gcacacgtgg ctggagtcac tccggattgc tttccagcag caccgcaggc
     3061 ccctcatcca gtgtttgctc aaggagttca agactattca agaagaggag tacacagagg
     3121 agctcgtcac ccaaggcctg cccctgatgt tcgagatctt aaaagcaagc aagaatgaag
     3181 tgatcagcca gcagctgtgc gtcatcttca cacactgtta tggtccctac cccattccca
     3241 agctcacaga gatcaagagg aagcagacgt cacgcctgga ccctcatttt ctgaacaata
     3301 aagagatgtc tgacgtgacc tttctggtag aggggaggcc tttctacgct cacaaagtgc
     3361 tgttgtttac agcctctccc aggttcaagg ccctcctctc cagcaagcca acgaacgaca
     3421 gcacctgcgt agagattggc tacgtgaagt accccatttt ccagctggtc atgcagtatc
     3481 tctactacgg tggcccagag tcacttctca ttaaaaacaa tgagatcatg gagcttctgt
     3541 ctgccgctaa gtttttccag ctggaggctc tgcagcgaca ctgtgagatt atctgtgcaa
     3601 aaagcgtcaa tactgacaac tgtgtggata tctacagcca tgccaagttc cttggggtga
     3661 cggagctctc agcatactgt gaaggctact ttcttaaaaa tatgatggtc ctcattgaaa
     3721 atgaagcatt caagcagctc ctgtatgaca aaaatggcga agggaccggc caggatgtgc
     3781 ttcaggactt acagaggacg ttggccatta ggattcagtc catccacctg tcgtcttcca
     3841 agggttctgt ggtatgaaac cgccccatgt ggcaacgctt cccaggagca aggtttctgg
     3901 ttccctcccg cattggcacc acaaaaacat acaaattgtt cctggtgtct gtctgtactg
     3961 ggccaaggag ctgcctccac tgcctcagct actctcaggt cagtgaactt ggcttccgtg
     4021 tgctcctgag tgaagaacct tccacgagtc tgcaggtgag attgtagcag aggccagaac
     4081 ccgcaggcca actcacagca gccaagccac ctccagtgcc caggagccat ggacacctgc
     4141 tgccgaggac catgatcgaa cagatggacc aaggcttaaa gatccctctg cttcctggtt
     4201 gactgatgaa aaactgaaag tatgaccttg aaaagcatca cgtcacacac gaatgacctt
     4261 ggaggctgta cttgttcatg catcagccgt ggtggctagt tgttgatgct gttgcccggc
     4321 atgaggaaat cacatgacca gtttttaggg gtgggaactt tttaaaaatg ttcatgtata
     4381 gcaaacacag agcagtctcg tagtttcgaa tatatttcta aaagcttaac agttcatttt
     4441 caaccgaatt gtgtttaggg aatctgtgtt tggggttctt ttcattttgt agacagtgag
     4501 ttgcaggtcc atgccgtgta aacttgcatc cgacaaattc ctgctgatac tatacaaggt
     4561 cacatattcc tgccttagtg atttgatcat ggttccacaa aagaggtgca ctgccagtta
     4621 tctctgatta tctcgaatcc agtagttgac aataacctgc atgctgatcg tggttgtggg
     4681 gtgagactag ggcaccccca cataacagaa catgcatttg catggaccaa acctgtacaa
     4741 catcatgtct gtgcttgggt ttcttttgcc aaagtaagat atgttctctc gcttctgcta
     4801 aaagcccatt tggtgaaaca aacatatctg tttcttttcc tgatcatgaa tggctctggg
     4861 gatagttttt gcagaaacat gttcatttct gataccgaag ggggggtggg ggagcacgtc
     4921 agagaatcta ctattaatct cagagcttta tctgtattct cagaagatgt tcatagtttg
     4981 ttactagcca aagagtatga ctatgttaga ttatttttaa agaggaaaag tgtaagatag
     5041 gtctgacact ttctggatcc tgagagtgtg cagtctacaa ttatctatga tgaaagttta
     5101 tattgacagg gttatgttta ctctgccata taatatatat acatatatgt atatatatgc
     5161 aaaacattgg taaagtgcca caatactcca aataattctt gagttgcggc cttttttttt
     5221 cctccttttt tatttttaat cctagataca ttaaggtaaa agccaggaga atggcttttg
     5281 tcttttggga tggccaagtt tcgttgataa acccatttcc tagcatgatt tttgggaagt
     5341 tgcgccaaac cctagagtct aaaggaactt gtatcctttg cctgttgtcc tacttcctca
     5401 acacctgtca aggacccatg tcaagtcttg tttcacgggt gtggtgtgca aggtacccag
     5461 ctcgagtctg tctggggcgt caactccttt gtgatgcaag tccctggggc ctctctcctc
     5521 catgtagtca tccatgagcc gacccagccc taccatcaag tgaggatgtg aacagctgct
     5581 tgaggtgaca accaagtcac agacacacaa gggtgacaca ctgttgcttg ccttcaggga
     5641 tactgctctc taacctagct ggttctctgt ggatgtctca ccgtctctgg acctccaggt
     5701 gttgatctgt acattggtaa ctcccgccta gacttctgtt cagtttggtg tgctttctct
     5761 gccattaaaa aaaaaaatta tttcccaca
//
