LOCUS       XM_039091665             821 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus abraxas 1, BRCA1 A complex subunit
            (Abraxas1), transcript variant X3, mRNA.
ACCESSION   XM_039091665
VERSION     XM_039091665.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091665.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..821
                     /gene="Abraxas1"
                     /gene_synonym="Ccdc98; Fam175a; RGD1305287"
                     /note="abraxas 1, BRCA1 A complex subunit; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 19 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:289468"
                     /db_xref="RGD:1305287"
     CDS             52..432
                     /gene="Abraxas1"
                     /gene_synonym="Ccdc98; Fam175a; RGD1305287"
                     /codon_start=1
                     /product="BRCA1-A complex subunit Abraxas 1 isoform X3"
                     /protein_id="XP_038947593.1"
                     /db_xref="GeneID:289468"
                     /db_xref="RGD:1305287"
                     /translation="MEGESTLGVLSGFVLGALTFQHLNTDSDTEGLLLGEMKGEAKNS
                     ITDSQMDSVKVVYTIDIQKYIPCYRLFSFYNSLGEVNEHALKKILSNVKKESREMPML
                     LLLIVGSRSRNHTQVCVSTQFVKC"
ORIGIN      
        1 cccgtcgggc gccgcgatag tggctgtggc ggtagcgact gaggcggcag tatggagggc
       61 gagagcacgt tgggggtgtt gtctggcttc gtgcttggcg cgctcacctt ccagcatctc
      121 aacactgact cagatacgga gggtcttctc ctcggtgaaa tgaaaggtga agccaagaat
      181 agcatcactg actcacagat ggacagcgtt aaagtcgtct acacaattga cattcagaaa
      241 tatattccat gctaccggct ttttagcttt tataattctt taggtgaagt aaatgaacac
      301 gcactgaaga aaattctttc aaatgtcaaa aaggaatccc gagaaatgcc gatgctgtta
      361 ctgctcatag tagggagtcg ctcccgaaac catactcagg tctgtgtgag cactcagttt
      421 gttaaatgtt aaagtatgta cgctaagata acttgaaaag ctttgtaatt gggtctgttt
      481 ctgatttata taactgaagc tttaccaaca gttagaaaag ccattttaag acaggtgggg
      541 tttgatgcct ttgatcccag cactagggaa gcagaggcag gtggatgtga gcttgaggcc
      601 agcctggtct acagatgaag ttccaggaca gccaggacta cagagaaagg cactggcaca
      661 cgtttttgtt tagtcttgtt gtgtccccag gctacaccac ggtgttctgg agccactggg
      721 tcactgggta cacggcagct actgcttcaa gaccattaat ttttcctgta ttctcttcag
      781 actgtggtgg gttggtataa attccgtcgt cactcggatc a
//
