LOCUS       XM_039091664            1036 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus abraxas 1, BRCA1 A complex subunit
            (Abraxas1), transcript variant X2, mRNA.
ACCESSION   XM_039091664
VERSION     XM_039091664.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091664.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1036
                     /gene="Abraxas1"
                     /gene_synonym="Ccdc98; Fam175a; RGD1305287"
                     /note="abraxas 1, BRCA1 A complex subunit; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 50 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:289468"
                     /db_xref="RGD:1305287"
     CDS             94..846
                     /gene="Abraxas1"
                     /gene_synonym="Ccdc98; Fam175a; RGD1305287"
                     /codon_start=1
                     /product="BRCA1-A complex subunit Abraxas 1 isoform X2"
                     /protein_id="XP_038947592.1"
                     /db_xref="GeneID:289468"
                     /db_xref="RGD:1305287"
                     /translation="MSKRLFHKVPLVVTNLGMSDQLGYKTESVSCTSTVFSRAVRTYS
                     SQFFNEDGSLKEVRKINEMYAAIQEELKTICQKVEQSEREVEKLLMDVNRLKEVRKKQ
                     QAQAKGAGEKSQNHPQENILLCQALRTFFPESQVLHSCVISLKNRHISHSGCNTDHHL
                     DVVDKLTLMVEYVYSPEASPAPAAPLSKRKALDTQDQWPAKRPRLLESESRPGPAFRG
                     SHQDKASSSSLDIDTEVGSPEDDTDYPRSPTF"
ORIGIN      
        1 acattcagaa atatattcca tgctaccggc tttttagctt ttataattct ttaggtgaag
       61 taaatgaaca cgcactgaag aaaattcttt caaatgtcaa aaaggctttt tcataaggta
      121 cctttggtgg ttaccaatct gggaatgtct gatcaactgg gttataaaac agagtctgtt
      181 tcctgtacgt ccactgtctt tagcagagct gtgaggacat acagttctca attttttaat
      241 gaagatggat cattaaagga agtacgtaag ataaatgaaa tgtatgctgc tatacaagaa
      301 gaattaaaga ctatatgcca aaaagttgaa caaagtgaac gagaagtaga gaaactattg
      361 atggatgtaa accgattaaa agaagttaga aaaaaacagc aagcacaggc taaaggagca
      421 ggagagaaga gccaaaacca tccccaggag aacattctcc tctgccaagc tttacgaaca
      481 ttctttccag agtctcaagt tcttcactct tgcgttattt ctttgaaaaa tagacatatt
      541 tctcacagtg ggtgtaacac tgaccaccat cttgatgtgg tggataagct aaccttaatg
      601 gtggagtacg tttacagccc tgaagctagt ccagcacctg cagccccact gagcaaacgt
      661 aaagctctag acacacaaga tcagtggcct gcgaagagac cacggctgct agagtcagaa
      721 agcagacctg ggccagcatt tcgaggcagt caccaggaca aagcctcctc aagcagcctc
      781 gatatagaca cagaggtggg gagcccggaa gatgatactg actaccctcg ctctcccaca
      841 ttttgattct ttgtagagga cattttttac tagactggag tttagggcac ttatttttac
      901 tctttgcttc ctggagtaat agagttcatg cttttactct attcagctgt ttgtaataca
      961 tggatatttt tactgttcaa ctgcttataa tatataggta agttaatatt ttataaagta
     1021 tcttaaaaat tcttta
//
